Wall clock time and date at job start Wed Apr 1 2020 06:01:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 N 1.46503 * 109.47184 * 2 1
4 4 C 1.46493 * 119.99800 * 263.16167 * 3 2 1
5 5 C 1.50702 * 109.46853 * 269.99870 * 4 3 2
6 6 C 1.38223 * 119.62251 * 94.73226 * 5 4 3
7 7 C 1.38625 * 119.16738 * 179.75474 * 6 5 4
8 8 C 1.38679 * 118.41441 * 0.50248 * 7 6 5
9 9 C 1.38173 * 119.16416 * 359.73599 * 8 7 6
10 10 N 1.31861 * 119.61579 * 274.99641 * 5 4 3
11 11 C 1.34782 * 119.99802 * 83.15998 * 3 2 1
12 12 O 1.21350 * 119.99354 * 184.14469 * 11 3 2
13 13 C 1.49451 * 119.99962 * 4.14263 * 11 3 2
14 14 O 1.21341 * 120.00269 * 354.24719 * 13 11 3
15 15 N 1.34778 * 119.99705 * 174.25147 * 13 11 3
16 16 C 1.47025 * 125.64815 * 0.03878 * 15 13 11
17 17 C 1.54373 * 107.28974 * 181.06012 * 16 15 13
18 18 C 1.55158 * 102.91946 * 22.13746 * 17 16 15
19 19 O 1.42900 * 111.00550 * 82.63820 * 18 17 16
20 20 C 1.50695 * 111.00640 * 206.45678 * 18 17 16
21 21 H 1.08006 * 119.99953 * 356.81791 * 20 18 17
22 22 C 1.37874 * 120.00217 * 176.54642 * 20 18 17
23 23 N 1.31513 * 119.99840 * 0.27346 * 22 20 18
24 24 Si 1.86795 * 120.00216 * 180.27131 * 22 20 18
25 25 H 1.48506 * 109.47108 * 89.99740 * 24 22 20
26 26 H 1.48496 * 109.47480 * 209.99880 * 24 22 20
27 27 H 1.48504 * 109.47389 * 330.00097 * 24 22 20
28 28 C 1.47424 * 125.64778 * 180.02562 * 15 13 11
29 29 H 1.08991 * 109.47239 * 300.00319 * 1 2 3
30 30 H 1.09000 * 109.46468 * 60.00175 * 1 2 3
31 31 H 1.08999 * 109.46930 * 179.97438 * 1 2 3
32 32 H 1.08999 * 109.47194 * 239.99424 * 2 1 3
33 33 H 1.09004 * 109.46938 * 119.99707 * 2 1 3
34 34 H 1.08997 * 109.47577 * 29.99643 * 4 3 2
35 35 H 1.09004 * 109.46996 * 150.00400 * 4 3 2
36 36 H 1.08007 * 120.41275 * 359.97438 * 6 5 4
37 37 H 1.07993 * 120.79445 * 180.26310 * 7 6 5
38 38 H 1.08007 * 120.41566 * 179.71241 * 8 7 6
39 39 H 1.08008 * 119.61531 * 179.97438 * 9 8 7
40 40 H 1.09000 * 109.88376 * 300.44251 * 16 15 13
41 41 H 1.08995 * 109.88172 * 61.60794 * 16 15 13
42 42 H 1.09001 * 110.70271 * 263.79676 * 17 16 15
43 43 H 1.08998 * 110.75673 * 140.50615 * 17 16 15
44 44 H 0.96699 * 114.00320 * 183.17874 * 19 18 17
45 45 H 0.97006 * 120.00116 * 180.02562 * 23 22 20
46 46 H 1.08998 * 110.36587 * 37.06627 * 28 15 13
47 47 H 1.09000 * 110.36648 * 274.74358 * 28 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 6 2.4050 2.0214 -1.2597
5 6 3.8676 1.7707 -1.5224
6 6 4.2459 0.7072 -2.3202
7 6 5.5936 0.4884 -2.5598
8 6 6.5152 1.3450 -1.9766
9 6 6.0625 2.3841 -1.1864
10 7 4.7719 2.5652 -0.9842
11 6 2.1120 2.0629 1.1590
12 8 2.4444 3.2300 1.1512
13 6 1.8062 1.3815 2.4535
14 8 1.3738 0.2477 2.4550
15 7 2.0107 2.0263 3.6192
16 6 2.5268 3.3956 3.7619
17 6 2.6175 3.6966 5.2732
18 6 2.6813 2.2811 5.9056
19 8 4.0140 1.7661 5.8750
20 6 2.1421 2.2932 7.3127
21 1 1.8270 3.2234 7.7623
22 6 2.0459 1.1163 8.0243
23 7 2.4297 -0.0163 7.4770
24 14 1.3705 1.1302 9.7658
25 1 -0.1015 0.9375 9.7274
26 1 1.9933 0.0318 10.5472
27 1 1.6825 2.4327 10.4074
28 6 1.7536 1.4756 4.9623
29 1 -0.3633 0.5138 0.8899
30 1 -0.3632 0.5138 -0.8900
31 1 -0.3633 -1.0277 -0.0005
32 1 1.8934 -0.5139 -0.8899
33 1 1.8934 -0.5138 0.8901
34 1 1.8130 1.6059 -2.0751
35 1 2.2269 3.0946 -1.1914
36 1 3.5006 0.0572 -2.7544
37 1 5.9184 -0.3320 -3.1825
38 1 7.5735 1.2015 -2.1379
39 1 6.7739 3.0554 -0.7283
40 1 3.5162 3.4678 3.3102
41 1 1.8464 4.0999 3.2834
42 1 1.7307 4.2313 5.6135
43 1 3.5211 4.2619 5.5010
44 1 4.0951 0.8645 6.2150
45 1 2.3617 -0.8445 7.9775
46 1 2.0086 0.4163 4.9931
47 1 0.7100 1.6237 5.2396
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001326213097.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 06:01:08
Heat of formation + Delta-G solvation = -58.443478 kcal
Electronic energy + Delta-G solvation = -31545.337618 eV
Core-core repulsion = 27308.123444 eV
Total energy + Delta-G solvation = -4237.214174 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.168 amu
Computer time = 0.80 seconds
Orbital eigenvalues (eV)
-40.76534 -40.04801 -38.42765 -37.23425 -36.08019 -34.15165 -32.81174 -32.28170
-32.20255 -30.25930 -30.13428 -27.96127 -27.38393 -25.59197 -24.01109 -23.69068
-22.95890 -22.41870 -21.00821 -19.63379 -18.74426 -17.22406 -17.13906 -16.90201
-16.60622 -16.28088 -16.00698 -15.62883 -15.36126 -15.12768 -14.78231 -14.40439
-14.12669 -13.77063 -13.57774 -13.46247 -13.25992 -13.04637 -12.90680 -12.79285
-12.57690 -12.24710 -12.14078 -11.94757 -11.81425 -11.63126 -11.52499 -11.11603
-11.00756 -10.84699 -10.52902 -10.48346 -10.47670 -10.17968 -10.06557 -9.60371
-9.36279 -9.33709 -8.89104 -8.69833 -8.64660 -8.39316 -7.82831 -6.29943
-4.39110 0.85050 1.10930 1.90368 2.64183 3.20081 3.27839 3.31059
3.62534 3.64821 3.88723 4.11931 4.25600 4.47242 4.64114 4.66613
4.82167 4.92716 4.97943 5.03618 5.13649 5.28257 5.42263 5.51013
5.52389 5.57084 5.59436 5.76917 5.84110 5.89470 5.90116 5.95750
6.08315 6.11177 6.31228 6.36339 6.48770 6.51637 6.54709 6.76110
6.84635 6.89953 7.18041 7.22334 7.32589 7.72831 7.88227 7.90325
8.01509 8.13063 8.52554 8.64993 9.29944 9.40970 10.77342
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.016003 B = 0.002910 C = 0.002739
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1749.217562 B = 9619.989739 C =10221.324799
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.157 4.157
2 C 0.092 3.908
3 N -0.588 5.588
4 C 0.164 3.836
5 C 0.108 3.892
6 C -0.162 4.162
7 C -0.078 4.078
8 C -0.173 4.173
9 C 0.101 3.899
10 N -0.457 5.457
11 C 0.510 3.490
12 O -0.499 6.499
13 C 0.508 3.492
14 O -0.531 6.531
15 N -0.573 5.573
16 C 0.112 3.888
17 C -0.121 4.121
18 C 0.249 3.751
19 O -0.582 6.582
20 C -0.536 4.536
21 H 0.068 0.932
22 C 0.071 3.929
23 N -0.895 5.895
24 Si 0.905 3.095
25 H -0.278 1.278
26 H -0.284 1.284
27 H -0.272 1.272
28 C 0.092 3.908
29 H 0.062 0.938
30 H 0.046 0.954
31 H 0.065 0.935
32 H 0.067 0.933
33 H 0.117 0.883
34 H 0.095 0.905
35 H 0.103 0.897
36 H 0.133 0.867
37 H 0.133 0.867
38 H 0.134 0.866
39 H 0.156 0.844
40 H 0.068 0.932
41 H 0.066 0.934
42 H 0.077 0.923
43 H 0.076 0.924
44 H 0.383 0.617
45 H 0.270 0.730
46 H 0.088 0.912
47 H 0.067 0.933
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.094 -0.106 -20.184 20.293
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.215 4.215
2 C -0.029 4.029
3 N -0.323 5.323
4 C 0.041 3.959
5 C -0.031 4.031
6 C -0.182 4.182
7 C -0.105 4.105
8 C -0.193 4.193
9 C -0.057 4.057
10 N -0.166 5.166
11 C 0.293 3.707
12 O -0.372 6.372
13 C 0.291 3.709
14 O -0.411 6.411
15 N -0.305 5.305
16 C -0.011 4.011
17 C -0.159 4.159
18 C 0.208 3.792
19 O -0.391 6.391
20 C -0.574 4.574
21 H 0.086 0.914
22 C -0.133 4.133
23 N -0.534 5.534
24 Si 0.732 3.268
25 H -0.204 1.204
26 H -0.210 1.210
27 H -0.197 1.197
28 C -0.028 4.028
29 H 0.081 0.919
30 H 0.065 0.935
31 H 0.084 0.916
32 H 0.085 0.915
33 H 0.134 0.866
34 H 0.114 0.886
35 H 0.122 0.878
36 H 0.151 0.849
37 H 0.151 0.849
38 H 0.152 0.848
39 H 0.173 0.827
40 H 0.086 0.914
41 H 0.084 0.916
42 H 0.096 0.904
43 H 0.094 0.906
44 H 0.233 0.767
45 H 0.080 0.920
46 H 0.106 0.894
47 H 0.085 0.915
Dipole moment (debyes) X Y Z Total
from point charges 1.882 1.009 -19.910 20.025
hybrid contribution -0.102 -1.518 0.491 1.599
sum 1.780 -0.509 -19.419 19.507
Atomic orbital electron populations
1.22056 0.95478 1.02227 1.01750 1.22150 0.95092 0.81156 1.04537
1.47773 1.64096 1.15100 1.05370 1.20298 0.88474 1.01108 0.86056
1.21674 0.96497 0.91639 0.93276 1.21979 0.97011 0.98706 1.00500
1.21564 0.93007 0.98332 0.97551 1.22195 1.00989 0.96818 0.99338
1.22863 0.92286 0.95849 0.94658 1.67615 1.02031 1.27718 1.19211
1.20410 0.78353 0.86755 0.85179 1.90743 1.44164 1.15659 1.86647
1.19582 0.80965 0.86188 0.84208 1.90604 1.46497 1.17694 1.86299
1.48654 1.59446 1.16170 1.06188 1.22142 0.99135 0.82061 0.97748
1.22721 1.02094 0.98816 0.92300 1.19621 0.80283 0.87385 0.91908
1.86114 1.29380 1.36187 1.87381 1.21488 1.43326 0.94425 0.98179
0.91373 1.25086 0.94081 0.95238 0.98852 1.69653 1.47120 0.98678
1.37927 0.86383 0.79023 0.77960 0.83431 1.20417 1.21004 1.19652
1.23465 1.00633 1.01024 0.77714 0.91879 0.93467 0.91598 0.91501
0.86565 0.88639 0.87838 0.84874 0.84861 0.84820 0.82671 0.91364
0.91578 0.90412 0.90563 0.76671 0.91953 0.89388 0.91521
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.85 9.74 37.16 0.36 -1.49 16
2 C 0.09 1.17 5.71 -4.04 -0.02 1.14 16
3 N -0.59 -8.39 2.47 -175.56 -0.43 -8.83 16
4 C 0.16 1.91 5.71 -5.20 -0.03 1.88 16
5 C 0.11 1.33 6.36 -82.58 -0.53 0.81 16
6 C -0.16 -1.53 9.72 -39.44 -0.38 -1.92 16
7 C -0.08 -0.67 10.18 -39.28 -0.40 -1.07 16
8 C -0.17 -1.58 10.11 -39.44 -0.40 -1.98 16
9 C 0.10 1.16 11.18 -17.55 -0.20 0.97 16
10 N -0.46 -6.53 10.27 -9.47 -0.10 -6.63 16
11 C 0.51 9.20 7.63 -11.58 -0.09 9.11 16
12 O -0.50 -9.68 13.72 5.50 0.08 -9.61 16
13 C 0.51 10.38 7.69 -11.58 -0.09 10.29 16
14 O -0.53 -11.15 12.11 5.50 0.07 -11.09 16
15 N -0.57 -12.39 3.33 -171.01 -0.57 -12.96 16
16 C 0.11 2.25 5.49 -3.04 -0.02 2.23 16
17 C -0.12 -2.54 6.13 -24.87 -0.15 -2.69 16
18 C 0.25 6.08 0.88 -89.63 -0.08 6.00 16
19 O -0.58 -15.06 13.17 -35.23 -0.46 -15.52 16
20 C -0.54 -13.89 8.26 -34.44 -0.28 -14.17 16
21 H 0.07 1.73 7.78 -52.48 -0.41 1.32 16
22 C 0.07 1.82 5.29 -17.82 -0.09 1.73 16
23 N -0.89 -23.55 10.69 55.43 0.59 -22.96 16
24 Si 0.90 20.20 29.54 -169.99 -5.02 15.18 16
25 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16
26 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16
27 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16
28 C 0.09 2.21 5.50 -2.54 -0.01 2.19 16
29 H 0.06 0.92 7.05 -51.93 -0.37 0.56 16
30 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16
31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16
32 H 0.07 0.64 8.02 -51.93 -0.42 0.22 16
33 H 0.12 1.82 5.38 -51.93 -0.28 1.54 16
34 H 0.10 0.76 7.97 -51.93 -0.41 0.35 16
35 H 0.10 1.34 7.37 -51.93 -0.38 0.96 16
36 H 0.13 0.90 8.06 -52.48 -0.42 0.48 16
37 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16
38 H 0.13 0.85 8.06 -52.48 -0.42 0.42 16
39 H 0.16 1.48 8.06 -52.48 -0.42 1.06 16
40 H 0.07 1.42 7.72 -51.93 -0.40 1.02 16
41 H 0.07 1.24 7.58 -51.93 -0.39 0.85 16
42 H 0.08 1.51 8.03 -51.93 -0.42 1.10 16
43 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16
44 H 0.38 10.11 7.26 45.56 0.33 10.44 16
45 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16
46 H 0.09 2.31 7.47 -51.93 -0.39 1.93 16
47 H 0.07 1.62 8.03 -51.93 -0.42 1.20 16
LS Contribution 386.82 15.07 5.83 5.83
Total: -1.00 -30.74 386.82 -8.48 -39.22
By element:
Atomic # 1 Polarization: 20.38 SS G_CDS: -6.05 Total: 14.33 kcal
Atomic # 6 Polarization: 15.45 SS G_CDS: -2.41 Total: 13.03 kcal
Atomic # 7 Polarization: -50.87 SS G_CDS: -0.51 Total: -51.38 kcal
Atomic # 8 Polarization: -35.90 SS G_CDS: -0.32 Total: -36.22 kcal
Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal
Total LS contribution 5.83 Total: 5.83 kcal
Total: -30.74 -8.48 -39.22 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001326213097.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -19.221 kcal
(2) G-P(sol) polarization free energy of solvation -30.742 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.963 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.480 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.222 kcal
(6) G-S(sol) free energy of system = (1) + (5) -58.443 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.80 seconds