Wall clock time and date at job start Wed Apr 1 2020 06:01:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46503 * 109.47184 * 2 1 4 4 C 1.46493 * 119.99800 * 263.16167 * 3 2 1 5 5 C 1.50702 * 109.46853 * 269.99870 * 4 3 2 6 6 C 1.38223 * 119.62251 * 94.73226 * 5 4 3 7 7 C 1.38625 * 119.16738 * 179.75474 * 6 5 4 8 8 C 1.38679 * 118.41441 * 0.50248 * 7 6 5 9 9 C 1.38173 * 119.16416 * 359.73599 * 8 7 6 10 10 N 1.31861 * 119.61579 * 274.99641 * 5 4 3 11 11 C 1.34782 * 119.99802 * 83.15998 * 3 2 1 12 12 O 1.21350 * 119.99354 * 184.14469 * 11 3 2 13 13 C 1.49451 * 119.99962 * 4.14263 * 11 3 2 14 14 O 1.21341 * 120.00269 * 354.24719 * 13 11 3 15 15 N 1.34778 * 119.99705 * 174.25147 * 13 11 3 16 16 C 1.47025 * 125.64815 * 0.03878 * 15 13 11 17 17 C 1.54373 * 107.28974 * 181.06012 * 16 15 13 18 18 C 1.55158 * 102.91946 * 22.13746 * 17 16 15 19 19 O 1.42900 * 111.00550 * 82.63820 * 18 17 16 20 20 C 1.50695 * 111.00640 * 206.45678 * 18 17 16 21 21 H 1.08006 * 119.99953 * 356.81791 * 20 18 17 22 22 C 1.37874 * 120.00217 * 176.54642 * 20 18 17 23 23 N 1.31513 * 119.99840 * 0.27346 * 22 20 18 24 24 Si 1.86795 * 120.00216 * 180.27131 * 22 20 18 25 25 H 1.48506 * 109.47108 * 89.99740 * 24 22 20 26 26 H 1.48496 * 109.47480 * 209.99880 * 24 22 20 27 27 H 1.48504 * 109.47389 * 330.00097 * 24 22 20 28 28 C 1.47424 * 125.64778 * 180.02562 * 15 13 11 29 29 H 1.08991 * 109.47239 * 300.00319 * 1 2 3 30 30 H 1.09000 * 109.46468 * 60.00175 * 1 2 3 31 31 H 1.08999 * 109.46930 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47194 * 239.99424 * 2 1 3 33 33 H 1.09004 * 109.46938 * 119.99707 * 2 1 3 34 34 H 1.08997 * 109.47577 * 29.99643 * 4 3 2 35 35 H 1.09004 * 109.46996 * 150.00400 * 4 3 2 36 36 H 1.08007 * 120.41275 * 359.97438 * 6 5 4 37 37 H 1.07993 * 120.79445 * 180.26310 * 7 6 5 38 38 H 1.08007 * 120.41566 * 179.71241 * 8 7 6 39 39 H 1.08008 * 119.61531 * 179.97438 * 9 8 7 40 40 H 1.09000 * 109.88376 * 300.44251 * 16 15 13 41 41 H 1.08995 * 109.88172 * 61.60794 * 16 15 13 42 42 H 1.09001 * 110.70271 * 263.79676 * 17 16 15 43 43 H 1.08998 * 110.75673 * 140.50615 * 17 16 15 44 44 H 0.96699 * 114.00320 * 183.17874 * 19 18 17 45 45 H 0.97006 * 120.00116 * 180.02562 * 23 22 20 46 46 H 1.08998 * 110.36587 * 37.06627 * 28 15 13 47 47 H 1.09000 * 110.36648 * 274.74358 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.4050 2.0214 -1.2597 5 6 3.8676 1.7707 -1.5224 6 6 4.2459 0.7072 -2.3202 7 6 5.5936 0.4884 -2.5598 8 6 6.5152 1.3450 -1.9766 9 6 6.0625 2.3841 -1.1864 10 7 4.7719 2.5652 -0.9842 11 6 2.1120 2.0629 1.1590 12 8 2.4444 3.2300 1.1512 13 6 1.8062 1.3815 2.4535 14 8 1.3738 0.2477 2.4550 15 7 2.0107 2.0263 3.6192 16 6 2.5268 3.3956 3.7619 17 6 2.6175 3.6966 5.2732 18 6 2.6813 2.2811 5.9056 19 8 4.0140 1.7661 5.8750 20 6 2.1421 2.2932 7.3127 21 1 1.8270 3.2234 7.7623 22 6 2.0459 1.1163 8.0243 23 7 2.4297 -0.0163 7.4770 24 14 1.3705 1.1302 9.7658 25 1 -0.1015 0.9375 9.7274 26 1 1.9933 0.0318 10.5472 27 1 1.6825 2.4327 10.4074 28 6 1.7536 1.4756 4.9623 29 1 -0.3633 0.5138 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8901 34 1 1.8130 1.6059 -2.0751 35 1 2.2269 3.0946 -1.1914 36 1 3.5006 0.0572 -2.7544 37 1 5.9184 -0.3320 -3.1825 38 1 7.5735 1.2015 -2.1379 39 1 6.7739 3.0554 -0.7283 40 1 3.5162 3.4678 3.3102 41 1 1.8464 4.0999 3.2834 42 1 1.7307 4.2313 5.6135 43 1 3.5211 4.2619 5.5010 44 1 4.0951 0.8645 6.2150 45 1 2.3617 -0.8445 7.9775 46 1 2.0086 0.4163 4.9931 47 1 0.7100 1.6237 5.2396 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326213097.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:01:08 Heat of formation + Delta-G solvation = -58.443478 kcal Electronic energy + Delta-G solvation = -31545.337618 eV Core-core repulsion = 27308.123444 eV Total energy + Delta-G solvation = -4237.214174 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.76534 -40.04801 -38.42765 -37.23425 -36.08019 -34.15165 -32.81174 -32.28170 -32.20255 -30.25930 -30.13428 -27.96127 -27.38393 -25.59197 -24.01109 -23.69068 -22.95890 -22.41870 -21.00821 -19.63379 -18.74426 -17.22406 -17.13906 -16.90201 -16.60622 -16.28088 -16.00698 -15.62883 -15.36126 -15.12768 -14.78231 -14.40439 -14.12669 -13.77063 -13.57774 -13.46247 -13.25992 -13.04637 -12.90680 -12.79285 -12.57690 -12.24710 -12.14078 -11.94757 -11.81425 -11.63126 -11.52499 -11.11603 -11.00756 -10.84699 -10.52902 -10.48346 -10.47670 -10.17968 -10.06557 -9.60371 -9.36279 -9.33709 -8.89104 -8.69833 -8.64660 -8.39316 -7.82831 -6.29943 -4.39110 0.85050 1.10930 1.90368 2.64183 3.20081 3.27839 3.31059 3.62534 3.64821 3.88723 4.11931 4.25600 4.47242 4.64114 4.66613 4.82167 4.92716 4.97943 5.03618 5.13649 5.28257 5.42263 5.51013 5.52389 5.57084 5.59436 5.76917 5.84110 5.89470 5.90116 5.95750 6.08315 6.11177 6.31228 6.36339 6.48770 6.51637 6.54709 6.76110 6.84635 6.89953 7.18041 7.22334 7.32589 7.72831 7.88227 7.90325 8.01509 8.13063 8.52554 8.64993 9.29944 9.40970 10.77342 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016003 B = 0.002910 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.217562 B = 9619.989739 C =10221.324799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.092 3.908 3 N -0.588 5.588 4 C 0.164 3.836 5 C 0.108 3.892 6 C -0.162 4.162 7 C -0.078 4.078 8 C -0.173 4.173 9 C 0.101 3.899 10 N -0.457 5.457 11 C 0.510 3.490 12 O -0.499 6.499 13 C 0.508 3.492 14 O -0.531 6.531 15 N -0.573 5.573 16 C 0.112 3.888 17 C -0.121 4.121 18 C 0.249 3.751 19 O -0.582 6.582 20 C -0.536 4.536 21 H 0.068 0.932 22 C 0.071 3.929 23 N -0.895 5.895 24 Si 0.905 3.095 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.272 1.272 28 C 0.092 3.908 29 H 0.062 0.938 30 H 0.046 0.954 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.117 0.883 34 H 0.095 0.905 35 H 0.103 0.897 36 H 0.133 0.867 37 H 0.133 0.867 38 H 0.134 0.866 39 H 0.156 0.844 40 H 0.068 0.932 41 H 0.066 0.934 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.383 0.617 45 H 0.270 0.730 46 H 0.088 0.912 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.094 -0.106 -20.184 20.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.029 4.029 3 N -0.323 5.323 4 C 0.041 3.959 5 C -0.031 4.031 6 C -0.182 4.182 7 C -0.105 4.105 8 C -0.193 4.193 9 C -0.057 4.057 10 N -0.166 5.166 11 C 0.293 3.707 12 O -0.372 6.372 13 C 0.291 3.709 14 O -0.411 6.411 15 N -0.305 5.305 16 C -0.011 4.011 17 C -0.159 4.159 18 C 0.208 3.792 19 O -0.391 6.391 20 C -0.574 4.574 21 H 0.086 0.914 22 C -0.133 4.133 23 N -0.534 5.534 24 Si 0.732 3.268 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.197 1.197 28 C -0.028 4.028 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.134 0.866 34 H 0.114 0.886 35 H 0.122 0.878 36 H 0.151 0.849 37 H 0.151 0.849 38 H 0.152 0.848 39 H 0.173 0.827 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.096 0.904 43 H 0.094 0.906 44 H 0.233 0.767 45 H 0.080 0.920 46 H 0.106 0.894 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.882 1.009 -19.910 20.025 hybrid contribution -0.102 -1.518 0.491 1.599 sum 1.780 -0.509 -19.419 19.507 Atomic orbital electron populations 1.22056 0.95478 1.02227 1.01750 1.22150 0.95092 0.81156 1.04537 1.47773 1.64096 1.15100 1.05370 1.20298 0.88474 1.01108 0.86056 1.21674 0.96497 0.91639 0.93276 1.21979 0.97011 0.98706 1.00500 1.21564 0.93007 0.98332 0.97551 1.22195 1.00989 0.96818 0.99338 1.22863 0.92286 0.95849 0.94658 1.67615 1.02031 1.27718 1.19211 1.20410 0.78353 0.86755 0.85179 1.90743 1.44164 1.15659 1.86647 1.19582 0.80965 0.86188 0.84208 1.90604 1.46497 1.17694 1.86299 1.48654 1.59446 1.16170 1.06188 1.22142 0.99135 0.82061 0.97748 1.22721 1.02094 0.98816 0.92300 1.19621 0.80283 0.87385 0.91908 1.86114 1.29380 1.36187 1.87381 1.21488 1.43326 0.94425 0.98179 0.91373 1.25086 0.94081 0.95238 0.98852 1.69653 1.47120 0.98678 1.37927 0.86383 0.79023 0.77960 0.83431 1.20417 1.21004 1.19652 1.23465 1.00633 1.01024 0.77714 0.91879 0.93467 0.91598 0.91501 0.86565 0.88639 0.87838 0.84874 0.84861 0.84820 0.82671 0.91364 0.91578 0.90412 0.90563 0.76671 0.91953 0.89388 0.91521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.85 9.74 37.16 0.36 -1.49 16 2 C 0.09 1.17 5.71 -4.04 -0.02 1.14 16 3 N -0.59 -8.39 2.47 -175.56 -0.43 -8.83 16 4 C 0.16 1.91 5.71 -5.20 -0.03 1.88 16 5 C 0.11 1.33 6.36 -82.58 -0.53 0.81 16 6 C -0.16 -1.53 9.72 -39.44 -0.38 -1.92 16 7 C -0.08 -0.67 10.18 -39.28 -0.40 -1.07 16 8 C -0.17 -1.58 10.11 -39.44 -0.40 -1.98 16 9 C 0.10 1.16 11.18 -17.55 -0.20 0.97 16 10 N -0.46 -6.53 10.27 -9.47 -0.10 -6.63 16 11 C 0.51 9.20 7.63 -11.58 -0.09 9.11 16 12 O -0.50 -9.68 13.72 5.50 0.08 -9.61 16 13 C 0.51 10.38 7.69 -11.58 -0.09 10.29 16 14 O -0.53 -11.15 12.11 5.50 0.07 -11.09 16 15 N -0.57 -12.39 3.33 -171.01 -0.57 -12.96 16 16 C 0.11 2.25 5.49 -3.04 -0.02 2.23 16 17 C -0.12 -2.54 6.13 -24.87 -0.15 -2.69 16 18 C 0.25 6.08 0.88 -89.63 -0.08 6.00 16 19 O -0.58 -15.06 13.17 -35.23 -0.46 -15.52 16 20 C -0.54 -13.89 8.26 -34.44 -0.28 -14.17 16 21 H 0.07 1.73 7.78 -52.48 -0.41 1.32 16 22 C 0.07 1.82 5.29 -17.82 -0.09 1.73 16 23 N -0.89 -23.55 10.69 55.43 0.59 -22.96 16 24 Si 0.90 20.20 29.54 -169.99 -5.02 15.18 16 25 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 27 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 28 C 0.09 2.21 5.50 -2.54 -0.01 2.19 16 29 H 0.06 0.92 7.05 -51.93 -0.37 0.56 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.64 8.02 -51.93 -0.42 0.22 16 33 H 0.12 1.82 5.38 -51.93 -0.28 1.54 16 34 H 0.10 0.76 7.97 -51.93 -0.41 0.35 16 35 H 0.10 1.34 7.37 -51.93 -0.38 0.96 16 36 H 0.13 0.90 8.06 -52.48 -0.42 0.48 16 37 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 38 H 0.13 0.85 8.06 -52.48 -0.42 0.42 16 39 H 0.16 1.48 8.06 -52.48 -0.42 1.06 16 40 H 0.07 1.42 7.72 -51.93 -0.40 1.02 16 41 H 0.07 1.24 7.58 -51.93 -0.39 0.85 16 42 H 0.08 1.51 8.03 -51.93 -0.42 1.10 16 43 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 44 H 0.38 10.11 7.26 45.56 0.33 10.44 16 45 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 46 H 0.09 2.31 7.47 -51.93 -0.39 1.93 16 47 H 0.07 1.62 8.03 -51.93 -0.42 1.20 16 LS Contribution 386.82 15.07 5.83 5.83 Total: -1.00 -30.74 386.82 -8.48 -39.22 By element: Atomic # 1 Polarization: 20.38 SS G_CDS: -6.05 Total: 14.33 kcal Atomic # 6 Polarization: 15.45 SS G_CDS: -2.41 Total: 13.03 kcal Atomic # 7 Polarization: -50.87 SS G_CDS: -0.51 Total: -51.38 kcal Atomic # 8 Polarization: -35.90 SS G_CDS: -0.32 Total: -36.22 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -30.74 -8.48 -39.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326213097.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.221 kcal (2) G-P(sol) polarization free energy of solvation -30.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds