Wall clock time and date at job start Wed Apr 1 2020 06:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46503 * 109.47184 * 2 1 4 4 C 1.46493 * 119.99800 * 263.16167 * 3 2 1 5 5 C 1.50702 * 109.46853 * 269.99870 * 4 3 2 6 6 C 1.38223 * 119.62251 * 94.73226 * 5 4 3 7 7 C 1.38625 * 119.16738 * 179.75474 * 6 5 4 8 8 C 1.38679 * 118.41441 * 0.50248 * 7 6 5 9 9 C 1.38173 * 119.16416 * 359.73599 * 8 7 6 10 10 N 1.31861 * 119.61579 * 274.99641 * 5 4 3 11 11 C 1.34782 * 119.99802 * 83.15998 * 3 2 1 12 12 O 1.21350 * 119.99354 * 184.14469 * 11 3 2 13 13 C 1.49451 * 119.99962 * 4.14263 * 11 3 2 14 14 O 1.21341 * 120.00269 * 354.24719 * 13 11 3 15 15 N 1.34778 * 119.99705 * 174.25147 * 13 11 3 16 16 C 1.47025 * 125.64815 * 0.03878 * 15 13 11 17 17 C 1.54373 * 107.28974 * 181.06012 * 16 15 13 18 18 C 1.55158 * 102.91946 * 22.13746 * 17 16 15 19 19 O 1.42900 * 111.00550 * 82.63820 * 18 17 16 20 20 C 1.50695 * 111.00640 * 206.45678 * 18 17 16 21 21 H 1.08006 * 119.99953 * 356.81791 * 20 18 17 22 22 C 1.37874 * 120.00217 * 176.54642 * 20 18 17 23 23 N 1.31513 * 119.99840 * 0.27346 * 22 20 18 24 24 Si 1.86795 * 120.00216 * 180.27131 * 22 20 18 25 25 H 1.48506 * 109.47108 * 89.99740 * 24 22 20 26 26 H 1.48496 * 109.47480 * 209.99880 * 24 22 20 27 27 H 1.48504 * 109.47389 * 330.00097 * 24 22 20 28 28 C 1.47424 * 125.64778 * 180.02562 * 15 13 11 29 29 H 1.08991 * 109.47239 * 300.00319 * 1 2 3 30 30 H 1.09000 * 109.46468 * 60.00175 * 1 2 3 31 31 H 1.08999 * 109.46930 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47194 * 239.99424 * 2 1 3 33 33 H 1.09004 * 109.46938 * 119.99707 * 2 1 3 34 34 H 1.08997 * 109.47577 * 29.99643 * 4 3 2 35 35 H 1.09004 * 109.46996 * 150.00400 * 4 3 2 36 36 H 1.08007 * 120.41275 * 359.97438 * 6 5 4 37 37 H 1.07993 * 120.79445 * 180.26310 * 7 6 5 38 38 H 1.08007 * 120.41566 * 179.71241 * 8 7 6 39 39 H 1.08008 * 119.61531 * 179.97438 * 9 8 7 40 40 H 1.09000 * 109.88376 * 300.44251 * 16 15 13 41 41 H 1.08995 * 109.88172 * 61.60794 * 16 15 13 42 42 H 1.09001 * 110.70271 * 263.79676 * 17 16 15 43 43 H 1.08998 * 110.75673 * 140.50615 * 17 16 15 44 44 H 0.96699 * 114.00320 * 183.17874 * 19 18 17 45 45 H 0.97006 * 120.00116 * 180.02562 * 23 22 20 46 46 H 1.08998 * 110.36587 * 37.06627 * 28 15 13 47 47 H 1.09000 * 110.36648 * 274.74358 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.4050 2.0214 -1.2597 5 6 3.8676 1.7707 -1.5224 6 6 4.2459 0.7072 -2.3202 7 6 5.5936 0.4884 -2.5598 8 6 6.5152 1.3450 -1.9766 9 6 6.0625 2.3841 -1.1864 10 7 4.7719 2.5652 -0.9842 11 6 2.1120 2.0629 1.1590 12 8 2.4444 3.2300 1.1512 13 6 1.8062 1.3815 2.4535 14 8 1.3738 0.2477 2.4550 15 7 2.0107 2.0263 3.6192 16 6 2.5268 3.3956 3.7619 17 6 2.6175 3.6966 5.2732 18 6 2.6813 2.2811 5.9056 19 8 4.0140 1.7661 5.8750 20 6 2.1421 2.2932 7.3127 21 1 1.8270 3.2234 7.7623 22 6 2.0459 1.1163 8.0243 23 7 2.4297 -0.0163 7.4770 24 14 1.3705 1.1302 9.7658 25 1 -0.1015 0.9375 9.7274 26 1 1.9933 0.0318 10.5472 27 1 1.6825 2.4327 10.4074 28 6 1.7536 1.4756 4.9623 29 1 -0.3633 0.5138 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8901 34 1 1.8130 1.6059 -2.0751 35 1 2.2269 3.0946 -1.1914 36 1 3.5006 0.0572 -2.7544 37 1 5.9184 -0.3320 -3.1825 38 1 7.5735 1.2015 -2.1379 39 1 6.7739 3.0554 -0.7283 40 1 3.5162 3.4678 3.3102 41 1 1.8464 4.0999 3.2834 42 1 1.7307 4.2313 5.6135 43 1 3.5211 4.2619 5.5010 44 1 4.0951 0.8645 6.2150 45 1 2.3617 -0.8445 7.9775 46 1 2.0086 0.4163 4.9931 47 1 0.7100 1.6237 5.2396 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326213097.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:01:07 Heat of formation + Delta-G solvation = -79.762904 kcal Electronic energy + Delta-G solvation = -31546.262098 eV Core-core repulsion = 27308.123444 eV Total energy + Delta-G solvation = -4238.138654 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.05268 -41.06504 -39.97865 -38.89029 -37.39052 -35.95286 -34.21904 -33.60333 -33.09568 -31.95785 -31.19746 -29.75422 -28.56871 -27.30050 -25.39873 -24.58507 -24.06951 -23.62434 -22.27795 -21.50114 -20.17357 -19.16241 -18.38008 -18.17847 -17.63980 -17.29262 -17.16392 -17.10740 -16.91931 -16.50870 -16.27434 -16.03842 -15.36766 -15.02536 -14.74475 -14.71537 -14.61593 -14.55234 -14.19341 -13.99524 -13.92436 -13.57873 -13.52165 -13.34962 -13.07723 -12.86468 -12.85136 -12.66898 -12.59882 -12.35826 -12.33840 -12.21196 -12.14198 -11.79219 -11.22653 -10.82112 -10.68636 -10.52059 -10.40246 -10.31047 -9.96631 -9.88298 -9.54632 -8.26535 -6.43343 0.07402 0.37568 0.41965 1.30941 1.43396 1.45461 1.55247 2.14299 2.33256 2.41417 2.94037 2.99267 3.15726 3.34151 3.75194 3.77518 4.01897 4.04602 4.08350 4.13870 4.16497 4.24795 4.29453 4.34687 4.41164 4.56024 4.62980 4.64216 4.71566 4.75795 4.80556 4.84851 4.93750 5.03122 5.05404 5.16526 5.19542 5.26676 5.30908 5.36938 5.40954 5.45818 5.73426 5.79608 5.94708 6.02931 6.33201 6.59959 6.67250 6.96275 7.11495 7.27091 7.34736 8.79508 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016003 B = 0.002910 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.217562 B = 9619.989739 C =10221.324799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.091 3.909 3 N -0.574 5.574 4 C 0.163 3.837 5 C 0.081 3.919 6 C -0.155 4.155 7 C -0.079 4.079 8 C -0.168 4.168 9 C 0.073 3.927 10 N -0.505 5.505 11 C 0.510 3.490 12 O -0.520 6.520 13 C 0.499 3.501 14 O -0.541 6.541 15 N -0.585 5.585 16 C 0.123 3.877 17 C -0.115 4.115 18 C 0.234 3.766 19 O -0.589 6.589 20 C -0.556 4.556 21 H 0.070 0.930 22 C 0.028 3.972 23 N -0.915 5.915 24 Si 0.967 3.033 25 H -0.275 1.275 26 H -0.283 1.283 27 H -0.267 1.267 28 C 0.109 3.891 29 H 0.026 0.974 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.111 0.889 33 H 0.083 0.917 34 H 0.142 0.858 35 H 0.085 0.915 36 H 0.167 0.833 37 H 0.169 0.831 38 H 0.161 0.839 39 H 0.160 0.840 40 H 0.059 0.941 41 H 0.082 0.918 42 H 0.093 0.907 43 H 0.082 0.918 44 H 0.376 0.624 45 H 0.271 0.729 46 H 0.056 0.944 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.922 -0.875 -22.449 22.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.030 4.030 3 N -0.308 5.308 4 C 0.042 3.958 5 C -0.058 4.058 6 C -0.175 4.175 7 C -0.105 4.105 8 C -0.188 4.188 9 C -0.084 4.084 10 N -0.215 5.215 11 C 0.292 3.708 12 O -0.396 6.396 13 C 0.283 3.717 14 O -0.421 6.421 15 N -0.317 5.317 16 C 0.001 3.999 17 C -0.153 4.153 18 C 0.194 3.806 19 O -0.398 6.398 20 C -0.594 4.594 21 H 0.088 0.912 22 C -0.173 4.173 23 N -0.554 5.554 24 Si 0.792 3.208 25 H -0.200 1.200 26 H -0.208 1.208 27 H -0.192 1.192 28 C -0.013 4.013 29 H 0.046 0.954 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.129 0.871 33 H 0.101 0.899 34 H 0.159 0.841 35 H 0.103 0.897 36 H 0.185 0.815 37 H 0.186 0.814 38 H 0.179 0.821 39 H 0.177 0.823 40 H 0.077 0.923 41 H 0.100 0.900 42 H 0.112 0.888 43 H 0.101 0.899 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.075 0.925 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.709 0.233 -22.226 22.293 hybrid contribution 0.005 -1.367 1.079 1.742 sum 1.714 -1.134 -21.147 21.246 Atomic orbital electron populations 1.22002 0.94657 1.03023 1.01217 1.22213 0.95687 0.80126 1.05010 1.47854 1.62375 1.15460 1.05093 1.20585 0.89452 1.00281 0.85524 1.21803 0.96140 0.92990 0.94868 1.22327 0.98384 0.97710 0.99103 1.22050 0.92559 0.98746 0.97172 1.22522 1.02722 0.95648 0.97875 1.23115 0.91825 0.97408 0.96079 1.67508 1.03453 1.29575 1.20914 1.19949 0.78957 0.86599 0.85312 1.90728 1.45697 1.16297 1.86830 1.20250 0.80269 0.86199 0.84985 1.90607 1.46480 1.18182 1.86805 1.48698 1.60374 1.16752 1.05867 1.22071 0.98984 0.81669 0.97198 1.22730 1.03171 0.96966 0.92390 1.19849 0.79570 0.89241 0.91980 1.86108 1.30573 1.35738 1.87366 1.21759 1.43799 0.94727 0.99095 0.91188 1.25818 0.94243 0.94888 1.02345 1.69760 1.47561 0.99051 1.39078 0.85417 0.78353 0.77947 0.79082 1.20029 1.20844 1.19183 1.23016 0.99792 0.99134 0.79352 0.95434 0.90865 0.90182 0.87117 0.89917 0.84066 0.89677 0.81534 0.81362 0.82112 0.82305 0.92271 0.89998 0.88843 0.89893 0.77451 0.91937 0.92531 0.92546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.28 9.74 71.98 0.70 -2.58 16 2 C 0.09 2.12 5.71 86.38 0.49 2.61 16 3 N -0.57 -15.73 2.47 -827.72 -2.05 -17.78 16 4 C 0.16 3.50 5.71 85.63 0.49 3.99 16 5 C 0.08 1.85 6.36 42.55 0.27 2.12 16 6 C -0.16 -2.39 9.72 22.36 0.22 -2.17 16 7 C -0.08 -1.07 10.18 22.47 0.23 -0.84 16 8 C -0.17 -2.68 10.11 22.36 0.23 -2.46 16 9 C 0.07 1.66 11.18 84.67 0.95 2.60 16 10 N -0.50 -14.42 10.27 -183.88 -1.89 -16.31 16 11 C 0.51 18.61 7.63 87.27 0.67 19.28 16 12 O -0.52 -20.58 13.72 -3.25 -0.04 -20.62 16 13 C 0.50 21.04 7.69 87.27 0.67 21.72 16 14 O -0.54 -23.53 12.11 -3.22 -0.04 -23.57 16 15 N -0.58 -26.14 3.33 -813.31 -2.71 -28.85 16 16 C 0.12 5.03 5.49 86.75 0.48 5.51 16 17 C -0.11 -4.83 6.13 31.80 0.20 -4.63 16 18 C 0.23 11.72 0.88 -10.15 -0.01 11.71 16 19 O -0.59 -31.52 13.17 -148.98 -1.96 -33.48 16 20 C -0.56 -29.16 8.26 25.60 0.21 -28.95 16 21 H 0.07 3.56 7.78 -2.91 -0.02 3.54 16 22 C 0.03 1.46 5.29 84.65 0.45 1.91 16 23 N -0.92 -49.33 10.69 21.45 0.23 -49.10 16 24 Si 0.97 41.59 29.54 68.60 2.03 43.61 16 25 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 26 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 27 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 28 C 0.11 5.43 5.50 86.85 0.48 5.90 16 29 H 0.03 0.79 7.05 -2.39 -0.02 0.77 16 30 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.11 1.64 8.02 -2.39 -0.02 1.62 16 33 H 0.08 2.57 5.38 -2.42 -0.01 2.55 16 34 H 0.14 1.66 7.97 -2.39 -0.02 1.64 16 35 H 0.08 2.16 7.37 -2.38 -0.02 2.14 16 36 H 0.17 1.33 8.06 -2.91 -0.02 1.31 16 37 H 0.17 1.05 8.06 -2.91 -0.02 1.03 16 38 H 0.16 1.57 8.06 -2.91 -0.02 1.54 16 39 H 0.16 3.15 8.06 -2.91 -0.02 3.13 16 40 H 0.06 2.52 7.72 -2.39 -0.02 2.50 16 41 H 0.08 3.08 7.58 -2.39 -0.02 3.06 16 42 H 0.09 3.60 8.03 -2.39 -0.02 3.58 16 43 H 0.08 3.34 8.14 -2.39 -0.02 3.33 16 44 H 0.38 20.73 7.26 -74.06 -0.54 20.19 16 45 H 0.27 13.95 8.31 -92.70 -0.77 13.18 16 46 H 0.06 3.13 7.47 -2.39 -0.02 3.12 16 47 H 0.06 2.85 8.03 -2.39 -0.02 2.83 16 Total: -1.00 -70.11 386.82 0.74 -69.38 By element: Atomic # 1 Polarization: 40.57 SS G_CDS: 0.46 Total: 41.03 kcal Atomic # 6 Polarization: 28.99 SS G_CDS: 6.71 Total: 35.70 kcal Atomic # 7 Polarization: -105.63 SS G_CDS: -6.41 Total: -112.04 kcal Atomic # 8 Polarization: -75.63 SS G_CDS: -2.05 Total: -77.68 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.61 kcal Total: -70.11 0.74 -69.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326213097.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.387 kcal (2) G-P(sol) polarization free energy of solvation -70.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds