Wall clock time and date at job start Wed Apr 1 2020 05:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46609 * 2 1 4 4 O 1.42896 * 109.47023 * 239.99876 * 2 1 3 5 5 C 1.35681 * 116.99719 * 89.99882 * 4 2 1 6 6 C 1.38927 * 119.68115 * 179.97438 * 5 4 2 7 7 C 1.38370 * 119.10941 * 179.97438 * 6 5 4 8 8 C 1.38828 * 118.48714 * 0.02562 * 7 6 5 9 9 C 1.38043 * 119.29063 * 359.97438 * 8 7 6 10 10 N 1.31962 * 120.83308 * 359.74721 * 9 8 7 11 11 C 1.50696 * 109.47219 * 119.99613 * 2 1 3 12 12 O 1.21278 * 119.99940 * 120.00033 * 11 2 1 13 13 N 1.34781 * 120.00084 * 300.00359 * 11 2 1 14 14 C 1.46500 * 119.99825 * 179.97438 * 13 11 2 15 15 H 1.09000 * 110.97255 * 322.30374 * 14 13 11 16 16 C 1.55021 * 111.10630 * 86.45410 * 14 13 11 17 17 O 1.43912 * 105.17972 * 81.91342 * 16 14 13 18 18 C 1.42402 * 109.55569 * 24.29758 * 17 16 14 19 19 C 1.52697 * 116.14175 * 129.84377 * 18 17 16 20 20 N 1.47219 * 87.79736 * 90.69826 * 19 18 17 21 21 C 1.36935 * 135.97407 * 206.45759 * 20 19 18 22 22 H 1.07995 * 120.00083 * 6.48300 * 21 20 19 23 23 C 1.38817 * 119.99741 * 186.48632 * 21 20 19 24 24 N 1.31621 * 119.99777 * 6.41211 * 23 21 20 25 25 Si 1.86796 * 119.99659 * 186.41024 * 23 21 20 26 26 H 1.48494 * 109.47314 * 84.99017 * 25 23 21 27 27 H 1.48507 * 109.46943 * 204.98927 * 25 23 21 28 28 H 1.48495 * 109.47489 * 324.98593 * 25 23 21 29 29 C 1.47209 * 88.04832 * 26.71385 * 20 19 18 30 30 C 1.53651 * 108.53393 * 358.08024 * 18 17 16 31 31 H 1.08999 * 109.47412 * 60.00450 * 1 2 3 32 32 H 1.09001 * 109.47050 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47152 * 299.99786 * 1 2 3 34 34 H 1.07998 * 120.44486 * 359.95834 * 6 5 4 35 35 H 1.08002 * 120.75462 * 180.02562 * 7 6 5 36 36 H 1.07999 * 120.35422 * 179.97438 * 8 7 6 37 37 H 1.07997 * 119.58806 * 180.02562 * 9 8 7 38 38 H 0.96998 * 119.99838 * 359.97438 * 13 11 2 39 39 H 1.08999 * 110.30044 * 322.99061 * 16 14 13 40 40 H 1.08990 * 110.38487 * 200.88089 * 16 14 13 41 41 H 1.09002 * 113.49773 * 335.97102 * 19 18 17 42 42 H 1.09000 * 113.56066 * 205.44246 * 19 18 17 43 43 H 0.96998 * 119.99574 * 180.02562 * 24 23 21 44 44 H 1.08998 * 113.50414 * 88.02132 * 29 20 19 45 45 H 1.09006 * 113.49869 * 218.55501 * 29 20 19 46 46 H 1.09003 * 110.92717 * 97.30122 * 30 18 17 47 47 H 1.08998 * 110.93473 * 220.96481 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1667 5 6 2.2116 0.0830 -2.2741 6 6 2.6747 -0.5148 -3.4396 7 6 2.8794 0.2679 -4.5621 8 6 2.6129 1.6278 -4.4787 9 6 2.1546 2.1544 -3.2878 10 7 1.9638 1.3814 -2.2354 11 6 2.0324 -0.7103 1.2305 12 8 2.7296 -1.6964 1.1192 13 7 1.7067 -0.2498 2.4546 14 6 2.1947 -0.9407 3.6508 15 1 2.1958 -2.0208 3.5042 16 6 3.6016 -0.4306 4.0552 17 8 3.3650 0.7811 4.7946 18 6 2.0530 0.7536 5.3475 19 6 1.9436 1.0740 6.8365 20 7 1.7655 2.4865 6.4614 21 6 2.0009 3.6992 7.0520 22 1 2.5180 3.7474 7.9989 23 6 1.5749 4.8668 6.4336 24 7 0.8359 4.8036 5.3462 25 14 2.0502 6.5273 7.1448 26 1 3.3909 6.9170 6.6390 27 1 1.0508 7.5461 6.7341 28 1 2.0867 6.4391 8.6267 29 6 1.2173 2.0237 5.1759 30 6 1.3631 -0.5456 4.9038 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 2.8725 -1.5761 -3.4690 35 1 3.2383 -0.1692 -5.4822 36 1 2.7624 2.2669 -5.3364 37 1 1.9454 3.2116 -3.2177 38 1 1.1493 0.5390 2.5435 39 1 4.1977 -0.2213 3.1670 40 1 4.1054 -1.1648 4.6837 41 1 2.8628 0.8842 7.3906 42 1 1.0661 0.6369 7.3129 43 1 0.5386 5.6194 4.9139 44 1 0.1426 1.8436 5.2013 45 1 1.5231 2.6359 4.3274 46 1 1.4377 -1.3099 5.6774 47 1 0.3219 -0.3627 4.6383 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327413873.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:29 Heat of formation + Delta-G solvation = -4.861236 kcal Electronic energy + Delta-G solvation = -30625.750944 eV Core-core repulsion = 26390.860270 eV Total energy + Delta-G solvation = -4234.890674 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.03715 -40.36542 -39.32083 -37.84697 -36.26860 -34.35526 -32.79956 -32.47441 -32.12836 -30.59557 -29.88943 -28.17747 -25.72080 -25.19736 -24.78451 -23.91927 -23.27437 -22.09638 -21.28539 -20.40677 -19.08147 -18.72922 -17.79752 -16.89168 -16.64672 -16.41284 -16.20124 -15.88838 -15.41641 -15.04920 -14.96886 -14.72689 -14.59371 -14.24975 -13.80270 -13.65117 -13.43381 -13.35721 -13.31977 -13.12809 -12.82010 -12.55230 -12.24779 -12.09035 -11.98160 -11.63477 -11.44937 -11.40953 -11.29041 -11.17161 -10.81531 -10.49947 -10.32640 -10.23181 -9.88591 -9.82276 -9.75176 -9.51604 -9.17800 -8.79992 -8.76544 -8.59106 -6.88363 -5.77718 -3.06980 0.88542 0.99137 2.35689 2.49844 3.36174 3.41362 3.45990 3.46994 3.52446 4.01250 4.13551 4.41850 4.48607 4.56624 4.59262 4.71491 4.77534 4.83297 4.94196 4.98082 5.00670 5.04341 5.21849 5.34958 5.39803 5.44162 5.45408 5.50698 5.56745 5.67813 5.80496 5.86623 5.88273 5.90451 5.90959 6.02040 6.13911 6.37150 6.43118 6.53837 6.60184 6.89576 6.96841 7.10945 7.40543 7.49789 7.59154 7.76279 7.97770 8.10528 9.04470 9.71152 10.64075 11.41637 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011396 B = 0.002694 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2456.460554 B =10391.910920 C =12156.752969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.072 3.928 3 H 0.119 0.881 4 O -0.277 6.277 5 C 0.324 3.676 6 C -0.190 4.190 7 C -0.041 4.041 8 C -0.216 4.216 9 C 0.143 3.857 10 N -0.540 5.540 11 C 0.520 3.480 12 O -0.527 6.527 13 N -0.707 5.707 14 C 0.113 3.887 15 H 0.105 0.895 16 C 0.039 3.961 17 O -0.335 6.335 18 C 0.051 3.949 19 C 0.110 3.890 20 N -0.601 5.601 21 C -0.214 4.214 22 H 0.081 0.919 23 C -0.008 4.008 24 N -0.921 5.921 25 Si 0.913 3.087 26 H -0.287 1.287 27 H -0.291 1.291 28 H -0.282 1.282 29 C 0.160 3.840 30 C -0.143 4.143 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.142 0.858 35 H 0.140 0.860 36 H 0.137 0.863 37 H 0.161 0.839 38 H 0.409 0.591 39 H 0.082 0.918 40 H 0.067 0.933 41 H 0.046 0.954 42 H 0.043 0.957 43 H 0.253 0.747 44 H 0.039 0.961 45 H 0.065 0.935 46 H 0.092 0.908 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.602 -12.122 -17.893 21.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.012 3.988 3 H 0.136 0.864 4 O -0.183 6.183 5 C 0.145 3.855 6 C -0.210 4.210 7 C -0.067 4.067 8 C -0.236 4.236 9 C -0.013 4.013 10 N -0.263 5.263 11 C 0.305 3.695 12 O -0.402 6.402 13 N -0.360 5.360 14 C 0.009 3.991 15 H 0.123 0.877 16 C -0.039 4.039 17 O -0.253 6.253 18 C 0.010 3.990 19 C -0.017 4.017 20 N -0.326 5.326 21 C -0.341 4.341 22 H 0.099 0.901 23 C -0.204 4.204 24 N -0.568 5.568 25 Si 0.743 3.257 26 H -0.214 1.214 27 H -0.217 1.217 28 H -0.207 1.207 29 C 0.034 3.966 30 C -0.182 4.182 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.101 0.899 34 H 0.160 0.840 35 H 0.158 0.842 36 H 0.155 0.845 37 H 0.178 0.822 38 H 0.244 0.756 39 H 0.101 0.899 40 H 0.085 0.915 41 H 0.064 0.936 42 H 0.060 0.940 43 H 0.063 0.937 44 H 0.057 0.943 45 H 0.084 0.916 46 H 0.111 0.889 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.236 -12.219 -17.052 20.979 hybrid contribution 0.005 1.049 -0.292 1.089 sum -0.231 -11.169 -17.344 20.631 Atomic orbital electron populations 1.22177 0.92183 1.03540 1.04260 1.22092 0.95910 0.98281 0.82532 0.86379 1.86360 1.79857 1.34432 1.17615 1.19909 0.91071 0.87471 0.87007 1.21082 1.06330 1.02223 0.91414 1.21416 0.94161 0.93466 0.97633 1.21994 1.05367 0.96215 1.00011 1.22474 0.92279 0.99318 0.87237 1.67292 1.21701 1.04680 1.32670 1.20173 0.80449 0.84624 0.84249 1.90717 1.37119 1.25789 1.86612 1.45780 1.53588 1.32237 1.04415 1.22595 0.94384 0.97840 0.84326 0.87730 1.23847 0.96036 0.88098 0.95945 1.88455 1.30761 1.37399 1.68726 1.23513 0.84179 0.94853 0.96441 1.22707 0.98469 0.87280 0.93221 1.45459 1.72689 0.99158 1.15319 1.18897 1.30336 0.81004 1.03876 0.90142 1.24788 0.99604 0.97676 0.98358 1.69822 1.39020 1.26854 1.21092 0.86121 0.77736 0.83560 0.78238 1.21448 1.21673 1.20728 1.22315 0.93757 0.88722 0.91823 1.23225 1.00516 0.98478 0.95981 0.90711 0.91283 0.89901 0.84009 0.84171 0.84535 0.82184 0.75550 0.89948 0.91478 0.93558 0.93974 0.93684 0.94308 0.91650 0.88924 0.89119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 9.43 37.16 0.35 -1.31 16 2 C 0.07 0.91 2.90 -27.88 -0.08 0.83 16 3 H 0.12 1.53 6.99 -51.93 -0.36 1.16 16 4 O -0.28 -3.81 9.29 -38.66 -0.36 -4.17 16 5 C 0.32 3.98 7.45 -17.12 -0.13 3.85 16 6 C -0.19 -1.86 10.04 -39.28 -0.39 -2.25 16 7 C -0.04 -0.31 10.17 -39.31 -0.40 -0.71 16 8 C -0.22 -1.57 10.11 -39.43 -0.40 -1.97 16 9 C 0.14 1.29 11.18 -17.57 -0.20 1.09 16 10 N -0.54 -6.39 8.65 -13.33 -0.12 -6.51 16 11 C 0.52 7.43 7.23 -10.99 -0.08 7.35 16 12 O -0.53 -9.18 16.25 -14.35 -0.23 -9.41 16 13 N -0.71 -9.27 5.13 -51.50 -0.26 -9.53 16 14 C 0.11 1.50 3.37 -65.54 -0.22 1.28 16 15 H 0.10 1.30 7.74 -51.93 -0.40 0.90 16 16 C 0.04 0.59 7.49 38.23 0.29 0.88 16 17 O -0.34 -6.61 11.18 -35.23 -0.39 -7.01 16 18 C 0.05 0.94 1.75 -90.44 -0.16 0.79 16 19 C 0.11 2.27 8.20 -8.08 -0.07 2.20 16 20 N -0.60 -15.67 3.77 -184.60 -0.70 -16.36 16 21 C -0.21 -6.12 10.73 -15.06 -0.16 -6.28 16 22 H 0.08 2.23 7.84 -52.49 -0.41 1.82 16 23 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 24 N -0.92 -27.25 11.82 55.49 0.66 -26.60 16 25 Si 0.91 22.43 29.56 -169.99 -5.02 17.40 16 26 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 27 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 28 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 29 C 0.16 3.63 6.71 -7.92 -0.05 3.58 16 30 C -0.14 -1.89 5.97 -25.07 -0.15 -2.04 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.08 0.74 7.56 -51.93 -0.39 0.34 16 34 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 35 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 36 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 37 H 0.16 1.05 8.06 -52.49 -0.42 0.63 16 38 H 0.41 5.08 8.04 -40.82 -0.33 4.75 16 39 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 40 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.04 0.80 8.13 -51.93 -0.42 0.38 16 43 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 44 H 0.04 0.86 7.95 -51.93 -0.41 0.45 16 45 H 0.07 1.67 7.60 -51.93 -0.39 1.27 16 46 H 0.09 1.04 8.13 -51.93 -0.42 0.62 16 47 H 0.09 1.10 7.81 -51.93 -0.41 0.69 16 LS Contribution 394.23 15.07 5.94 5.94 Total: -1.00 -36.08 394.23 -9.33 -45.41 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -6.89 Total: 3.86 kcal Atomic # 6 Polarization: 8.92 SS G_CDS: -1.95 Total: 6.98 kcal Atomic # 7 Polarization: -58.58 SS G_CDS: -0.42 Total: -59.00 kcal Atomic # 8 Polarization: -19.60 SS G_CDS: -0.99 Total: -20.59 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -36.08 -9.33 -45.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327413873.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.545 kcal (2) G-P(sol) polarization free energy of solvation -36.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds