Wall clock time and date at job start Wed Apr 1 2020 05:34:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46609 * 2 1 4 4 O 1.42896 * 109.47023 * 239.99876 * 2 1 3 5 5 C 1.35681 * 116.99719 * 89.99882 * 4 2 1 6 6 C 1.38927 * 119.68115 * 179.97438 * 5 4 2 7 7 C 1.38370 * 119.10941 * 179.97438 * 6 5 4 8 8 C 1.38828 * 118.48714 * 0.02562 * 7 6 5 9 9 C 1.38043 * 119.29063 * 359.97438 * 8 7 6 10 10 N 1.31962 * 120.83308 * 359.74721 * 9 8 7 11 11 C 1.50696 * 109.47219 * 119.99613 * 2 1 3 12 12 O 1.21278 * 119.99940 * 120.00033 * 11 2 1 13 13 N 1.34781 * 120.00084 * 300.00359 * 11 2 1 14 14 C 1.46500 * 119.99825 * 179.97438 * 13 11 2 15 15 H 1.09000 * 110.97255 * 322.30374 * 14 13 11 16 16 C 1.55021 * 111.10630 * 86.45410 * 14 13 11 17 17 O 1.43912 * 105.17972 * 81.91342 * 16 14 13 18 18 C 1.42402 * 109.55569 * 24.29758 * 17 16 14 19 19 C 1.52697 * 116.14175 * 129.84377 * 18 17 16 20 20 N 1.47219 * 87.79736 * 90.69826 * 19 18 17 21 21 C 1.36935 * 135.97407 * 206.45759 * 20 19 18 22 22 H 1.07995 * 120.00083 * 6.48300 * 21 20 19 23 23 C 1.38817 * 119.99741 * 186.48632 * 21 20 19 24 24 N 1.31621 * 119.99777 * 6.41211 * 23 21 20 25 25 Si 1.86796 * 119.99659 * 186.41024 * 23 21 20 26 26 H 1.48494 * 109.47314 * 84.99017 * 25 23 21 27 27 H 1.48507 * 109.46943 * 204.98927 * 25 23 21 28 28 H 1.48495 * 109.47489 * 324.98593 * 25 23 21 29 29 C 1.47209 * 88.04832 * 26.71385 * 20 19 18 30 30 C 1.53651 * 108.53393 * 358.08024 * 18 17 16 31 31 H 1.08999 * 109.47412 * 60.00450 * 1 2 3 32 32 H 1.09001 * 109.47050 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47152 * 299.99786 * 1 2 3 34 34 H 1.07998 * 120.44486 * 359.95834 * 6 5 4 35 35 H 1.08002 * 120.75462 * 180.02562 * 7 6 5 36 36 H 1.07999 * 120.35422 * 179.97438 * 8 7 6 37 37 H 1.07997 * 119.58806 * 180.02562 * 9 8 7 38 38 H 0.96998 * 119.99838 * 359.97438 * 13 11 2 39 39 H 1.08999 * 110.30044 * 322.99061 * 16 14 13 40 40 H 1.08990 * 110.38487 * 200.88089 * 16 14 13 41 41 H 1.09002 * 113.49773 * 335.97102 * 19 18 17 42 42 H 1.09000 * 113.56066 * 205.44246 * 19 18 17 43 43 H 0.96998 * 119.99574 * 180.02562 * 24 23 21 44 44 H 1.08998 * 113.50414 * 88.02132 * 29 20 19 45 45 H 1.09006 * 113.49869 * 218.55501 * 29 20 19 46 46 H 1.09003 * 110.92717 * 97.30122 * 30 18 17 47 47 H 1.08998 * 110.93473 * 220.96481 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1667 5 6 2.2116 0.0830 -2.2741 6 6 2.6747 -0.5148 -3.4396 7 6 2.8794 0.2679 -4.5621 8 6 2.6129 1.6278 -4.4787 9 6 2.1546 2.1544 -3.2878 10 7 1.9638 1.3814 -2.2354 11 6 2.0324 -0.7103 1.2305 12 8 2.7296 -1.6964 1.1192 13 7 1.7067 -0.2498 2.4546 14 6 2.1947 -0.9407 3.6508 15 1 2.1958 -2.0208 3.5042 16 6 3.6016 -0.4306 4.0552 17 8 3.3650 0.7811 4.7946 18 6 2.0530 0.7536 5.3475 19 6 1.9436 1.0740 6.8365 20 7 1.7655 2.4865 6.4614 21 6 2.0009 3.6992 7.0520 22 1 2.5180 3.7474 7.9989 23 6 1.5749 4.8668 6.4336 24 7 0.8359 4.8036 5.3462 25 14 2.0502 6.5273 7.1448 26 1 3.3909 6.9170 6.6390 27 1 1.0508 7.5461 6.7341 28 1 2.0867 6.4391 8.6267 29 6 1.2173 2.0237 5.1759 30 6 1.3631 -0.5456 4.9038 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 2.8725 -1.5761 -3.4690 35 1 3.2383 -0.1692 -5.4822 36 1 2.7624 2.2669 -5.3364 37 1 1.9454 3.2116 -3.2177 38 1 1.1493 0.5390 2.5435 39 1 4.1977 -0.2213 3.1670 40 1 4.1054 -1.1648 4.6837 41 1 2.8628 0.8842 7.3906 42 1 1.0661 0.6369 7.3129 43 1 0.5386 5.6194 4.9139 44 1 0.1426 1.8436 5.2013 45 1 1.5231 2.6359 4.3274 46 1 1.4377 -1.3099 5.6774 47 1 0.3219 -0.3627 4.6383 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327413873.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:28 Heat of formation + Delta-G solvation = -31.398303 kcal Electronic energy + Delta-G solvation = -30626.901677 eV Core-core repulsion = 26390.860270 eV Total energy + Delta-G solvation = -4236.041407 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.98443 -41.53806 -40.50843 -38.80908 -37.83252 -35.60098 -34.18163 -33.59025 -33.33425 -31.61984 -30.84597 -29.83242 -27.36922 -26.53899 -26.07546 -24.66477 -24.16194 -23.72318 -22.45413 -21.51230 -20.59760 -19.58817 -18.83373 -18.68275 -17.86493 -17.37193 -17.05675 -16.94837 -16.72570 -16.53968 -16.19643 -15.98977 -15.69836 -15.46441 -15.28133 -14.95412 -14.68841 -14.47166 -14.42379 -14.16355 -13.98625 -13.62237 -13.42748 -13.20915 -13.02670 -12.93039 -12.84433 -12.79056 -12.71043 -12.57139 -12.26795 -12.21738 -11.96901 -11.55581 -11.36650 -10.96749 -10.90315 -10.87492 -10.58134 -10.45995 -10.01932 -9.51141 -8.91735 -7.92689 -5.22231 0.19140 0.32432 1.36416 1.43013 1.43740 1.47232 1.54127 2.41166 2.46956 2.78511 2.81893 3.27487 3.28093 3.33279 3.51260 3.60554 3.64046 3.76793 3.84838 3.97018 4.02254 4.05048 4.10932 4.22679 4.33479 4.36347 4.63894 4.65189 4.66546 4.68208 4.75369 4.77499 4.80020 4.91648 4.92185 5.00608 5.05373 5.07211 5.18017 5.21821 5.27910 5.35412 5.49068 5.52228 5.92314 6.13206 6.30370 6.36693 6.85478 6.91605 7.00051 7.59695 8.61205 9.26421 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011396 B = 0.002694 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2456.460554 B =10391.910920 C =12156.752969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.075 3.925 3 H 0.109 0.891 4 O -0.298 6.298 5 C 0.291 3.709 6 C -0.201 4.201 7 C -0.036 4.036 8 C -0.203 4.203 9 C 0.122 3.878 10 N -0.565 5.565 11 C 0.522 3.478 12 O -0.560 6.560 13 N -0.702 5.702 14 C 0.119 3.881 15 H 0.124 0.876 16 C 0.035 3.965 17 O -0.371 6.371 18 C 0.073 3.927 19 C 0.108 3.892 20 N -0.640 5.640 21 C -0.229 4.229 22 H 0.080 0.920 23 C -0.066 4.066 24 N -0.949 5.949 25 Si 0.977 3.023 26 H -0.289 1.289 27 H -0.290 1.290 28 H -0.269 1.269 29 C 0.160 3.840 30 C -0.126 4.126 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.094 0.906 34 H 0.149 0.851 35 H 0.176 0.824 36 H 0.171 0.829 37 H 0.179 0.821 38 H 0.412 0.588 39 H 0.069 0.931 40 H 0.092 0.908 41 H 0.044 0.956 42 H 0.071 0.929 43 H 0.249 0.751 44 H 0.044 0.956 45 H 0.025 0.975 46 H 0.127 0.873 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.811 -13.116 -18.694 22.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.015 3.985 3 H 0.127 0.873 4 O -0.205 6.205 5 C 0.113 3.887 6 C -0.222 4.222 7 C -0.061 4.061 8 C -0.223 4.223 9 C -0.032 4.032 10 N -0.289 5.289 11 C 0.308 3.692 12 O -0.438 6.438 13 N -0.354 5.354 14 C 0.015 3.985 15 H 0.141 0.859 16 C -0.043 4.043 17 O -0.290 6.290 18 C 0.032 3.968 19 C -0.017 4.017 20 N -0.366 5.366 21 C -0.357 4.357 22 H 0.097 0.903 23 C -0.259 4.259 24 N -0.598 5.598 25 Si 0.805 3.195 26 H -0.216 1.216 27 H -0.217 1.217 28 H -0.193 1.193 29 C 0.034 3.966 30 C -0.165 4.165 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.113 0.887 34 H 0.166 0.834 35 H 0.194 0.806 36 H 0.188 0.812 37 H 0.196 0.804 38 H 0.248 0.752 39 H 0.087 0.913 40 H 0.110 0.890 41 H 0.063 0.937 42 H 0.088 0.912 43 H 0.058 0.942 44 H 0.062 0.938 45 H 0.044 0.956 46 H 0.145 0.855 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -0.446 -13.233 -17.841 22.217 hybrid contribution 0.154 1.370 -0.124 1.384 sum -0.292 -11.863 -17.966 21.531 Atomic orbital electron populations 1.22128 0.90378 1.03911 1.04825 1.22056 0.97215 0.97277 0.81963 0.87340 1.86311 1.80646 1.35367 1.18208 1.20220 0.93190 0.87992 0.87301 1.21362 1.06332 1.02993 0.91464 1.21878 0.92832 0.93429 0.97990 1.22400 1.03087 0.96621 1.00176 1.22976 0.92638 1.00126 0.87507 1.67229 1.22567 1.04893 1.34215 1.20459 0.79713 0.84116 0.84881 1.90688 1.38673 1.27369 1.87102 1.45812 1.53155 1.32134 1.04339 1.22630 0.93022 0.98661 0.84235 0.85857 1.24033 0.97428 0.87186 0.95612 1.88420 1.31427 1.39914 1.69275 1.23139 0.83690 0.95308 0.94630 1.22934 0.99323 0.84515 0.94947 1.45863 1.73220 1.00463 1.17088 1.19250 1.29817 0.82771 1.03880 0.90265 1.25608 1.00204 1.01044 0.99083 1.69984 1.40288 1.27196 1.22327 0.85116 0.76949 0.79244 0.78156 1.21624 1.21661 1.19342 1.22333 0.94590 0.90374 0.89329 1.23211 1.00645 0.96128 0.96489 0.90704 0.90921 0.88698 0.83371 0.80619 0.81180 0.80354 0.75189 0.91259 0.89035 0.93724 0.91177 0.94244 0.93799 0.95611 0.85524 0.87375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.15 9.43 71.98 0.68 -2.47 16 2 C 0.07 1.96 2.90 29.85 0.09 2.04 16 3 H 0.11 2.99 6.99 -2.39 -0.02 2.97 16 4 O -0.30 -8.55 9.29 -70.95 -0.66 -9.21 16 5 C 0.29 7.34 7.45 84.80 0.63 7.97 16 6 C -0.20 -3.85 10.04 22.47 0.23 -3.62 16 7 C -0.04 -0.46 10.17 22.44 0.23 -0.23 16 8 C -0.20 -2.48 10.11 22.36 0.23 -2.25 16 9 C 0.12 2.12 11.18 84.63 0.95 3.07 16 10 N -0.56 -13.67 8.65 -308.95 -2.67 -16.34 16 11 C 0.52 15.03 7.23 87.66 0.63 15.66 16 12 O -0.56 -19.64 16.25 16.02 0.26 -19.38 16 13 N -0.70 -17.99 5.13 -435.23 -2.23 -20.23 16 14 C 0.12 2.92 3.37 46.54 0.16 3.07 16 15 H 0.12 2.69 7.74 -2.39 -0.02 2.67 16 16 C 0.03 1.02 7.49 72.67 0.54 1.57 16 17 O -0.37 -14.57 11.18 -148.98 -1.67 -16.23 16 18 C 0.07 2.62 1.75 -10.67 -0.02 2.60 16 19 C 0.11 4.32 8.20 83.37 0.68 5.00 16 20 N -0.64 -33.70 3.77 -739.01 -2.79 -36.49 16 21 C -0.23 -13.32 10.73 84.04 0.90 -12.41 16 22 H 0.08 4.45 7.84 -2.91 -0.02 4.43 16 23 C -0.07 -3.86 5.50 84.86 0.47 -3.39 16 24 N -0.95 -57.69 11.82 21.65 0.26 -57.43 16 25 Si 0.98 46.85 29.56 68.60 2.03 48.88 16 26 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 27 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 28 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 29 C 0.16 7.33 6.71 83.48 0.56 7.89 16 30 C -0.13 -2.95 5.97 31.67 0.19 -2.76 16 31 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.09 1.65 7.56 -2.39 -0.02 1.63 16 34 H 0.15 2.48 8.06 -2.91 -0.02 2.46 16 35 H 0.18 0.89 8.06 -2.91 -0.02 0.87 16 36 H 0.17 0.89 8.06 -2.91 -0.02 0.87 16 37 H 0.18 2.18 8.06 -2.91 -0.02 2.16 16 38 H 0.41 10.15 8.04 -92.71 -0.75 9.40 16 39 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 40 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 41 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.07 2.45 8.13 -2.39 -0.02 2.43 16 43 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 44 H 0.04 1.95 7.95 -2.39 -0.02 1.93 16 45 H 0.03 1.36 7.60 -2.38 -0.02 1.34 16 46 H 0.13 2.22 8.13 -2.39 -0.02 2.21 16 47 H 0.11 2.23 7.81 -2.39 -0.02 2.21 16 Total: -1.00 -81.67 394.23 -0.09 -81.76 By element: Atomic # 1 Polarization: 22.68 SS G_CDS: 0.24 Total: 22.93 kcal Atomic # 6 Polarization: 14.61 SS G_CDS: 7.14 Total: 21.75 kcal Atomic # 7 Polarization: -123.05 SS G_CDS: -7.44 Total: -130.49 kcal Atomic # 8 Polarization: -42.76 SS G_CDS: -2.06 Total: -44.82 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.88 kcal Total: -81.67 -0.09 -81.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327413873.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.363 kcal (2) G-P(sol) polarization free energy of solvation -81.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds