Wall clock time and date at job start Wed Apr 1 2020 04:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47133 * 2 1 4 4 C 1.50705 * 109.47335 * 119.99989 * 2 1 3 5 5 H 1.08005 * 119.99922 * 119.99950 * 4 2 1 6 6 C 1.37866 * 119.99822 * 299.99995 * 4 2 1 7 7 N 1.31515 * 120.00254 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 119.99917 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47063 * 90.00200 * 8 6 4 10 10 H 1.48505 * 109.47050 * 209.99940 * 8 6 4 11 11 H 1.48494 * 109.46990 * 329.99896 * 8 6 4 12 12 C 1.50700 * 109.47189 * 239.99859 * 2 1 3 13 13 O 1.21277 * 120.00532 * 264.21021 * 12 2 1 14 14 N 1.34777 * 120.00085 * 84.20699 * 12 2 1 15 15 C 1.47077 * 120.88584 * 175.14860 * 14 12 2 16 16 C 1.53241 * 108.52222 * 231.20780 * 15 14 12 17 17 N 1.46897 * 109.33929 * 306.16969 * 16 15 14 18 18 C 1.46906 * 110.99574 * 187.25506 * 17 16 15 19 19 C 1.50706 * 109.46865 * 170.00061 * 18 17 16 20 20 C 1.38254 * 120.00069 * 89.99623 * 19 18 17 21 21 C 1.38213 * 119.99821 * 180.02562 * 20 19 18 22 22 C 1.38255 * 120.00369 * 359.96054 * 21 20 19 23 23 C 1.38218 * 119.99812 * 359.97438 * 22 21 20 24 24 N 1.48012 * 119.99958 * 180.02562 * 23 22 21 25 25 O 1.21799 * 120.00315 * 359.97438 * 24 23 22 26 26 O 1.21801 * 120.00124 * 180.02562 * 24 23 22 27 27 C 1.38210 * 119.99670 * 269.72117 * 19 18 17 28 28 C 1.46897 * 111.27139 * 63.10586 * 17 16 15 29 29 C 1.47083 * 120.87919 * 355.17191 * 14 12 2 30 30 H 1.09001 * 109.47259 * 186.13832 * 1 2 3 31 31 H 1.09007 * 109.47023 * 306.13426 * 1 2 3 32 32 H 1.09000 * 109.47323 * 66.13804 * 1 2 3 33 33 H 0.96998 * 120.00011 * 180.02562 * 7 6 4 34 34 H 1.09007 * 109.62923 * 111.49650 * 15 14 12 35 35 H 1.08999 * 109.62909 * 350.92009 * 15 14 12 36 36 H 1.09005 * 109.49156 * 186.20712 * 16 15 14 37 37 H 1.08994 * 109.49407 * 66.13137 * 16 15 14 38 38 H 1.08997 * 109.47172 * 49.99996 * 18 17 16 39 39 H 1.08996 * 109.46925 * 289.99542 * 18 17 16 40 40 H 1.07998 * 119.99712 * 359.97438 * 20 19 18 41 41 H 1.08005 * 119.99784 * 179.97438 * 21 20 19 42 42 H 1.07996 * 120.00344 * 180.02562 * 22 21 20 43 43 H 1.08000 * 120.00274 * 0.02562 * 27 19 18 44 44 H 1.08998 * 109.48931 * 56.85524 * 28 17 16 45 45 H 1.08995 * 109.49379 * 176.93270 * 28 17 16 46 46 H 1.09002 * 109.63170 * 248.50273 * 29 14 12 47 47 H 1.08997 * 109.62833 * 9.08520 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2394 2.4826 7 7 0.9436 0.8302 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.6298 -0.5459 4.4123 10 1 1.3432 -0.9492 5.1120 11 1 2.4859 -2.5662 3.7119 12 6 2.0323 -0.7104 -1.2304 13 8 2.3344 -1.8836 -1.1726 14 7 2.1459 -0.0421 -2.3953 15 6 2.7326 -0.6854 -3.5807 16 6 3.8252 0.2311 -4.1413 17 7 3.2657 1.5693 -4.3738 18 6 4.2314 2.4300 -5.0701 19 6 3.5480 3.6998 -5.5081 20 6 3.5255 4.7977 -4.6682 21 6 2.8983 5.9621 -5.0697 22 6 2.2942 6.0292 -6.3115 23 6 2.3179 4.9319 -7.1517 24 7 1.6716 5.0039 -8.4813 25 8 1.1185 6.0298 -8.8350 26 8 1.6921 4.0368 -9.2216 27 6 2.9488 3.7685 -6.7516 28 6 2.8207 2.1866 -3.1173 29 6 1.6869 1.3501 -2.5147 30 1 -0.3634 -1.0218 0.1099 31 1 -0.3633 0.6060 0.8300 32 1 -0.3634 0.4157 -0.9398 33 1 0.7096 1.1618 3.4844 34 1 1.9601 -0.8379 -4.3346 35 1 3.1678 -1.6443 -3.2993 36 1 4.1950 -0.1770 -5.0820 37 1 4.6452 0.2989 -3.4265 38 1 4.6205 1.9068 -5.9436 39 1 5.0529 2.6733 -4.3964 40 1 3.9972 4.7453 -3.6981 41 1 2.8803 6.8197 -4.4134 42 1 1.8045 6.9391 -6.6254 43 1 2.9699 2.9121 -7.4094 44 1 3.6548 2.2271 -2.4167 45 1 2.4620 3.1966 -3.3152 46 1 0.8139 1.3934 -3.1661 47 1 1.4308 1.7371 -1.5284 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333883629.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:37 Heat of formation + Delta-G solvation = -18.804421 kcal Electronic energy + Delta-G solvation = -30459.778592 eV Core-core repulsion = 26224.283297 eV Total energy + Delta-G solvation = -4235.495295 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.23743 -41.30660 -40.57834 -38.86376 -37.67689 -35.91652 -35.78685 -33.38800 -32.80670 -32.50156 -31.75869 -28.99281 -27.65026 -27.27946 -26.02246 -24.95223 -24.20912 -23.47553 -22.54002 -21.77627 -19.94806 -19.89695 -19.65294 -18.59291 -18.47138 -17.85759 -17.52310 -17.08574 -16.66546 -16.41250 -16.21223 -16.12248 -15.87082 -15.60893 -15.18896 -14.82354 -14.60962 -14.40513 -14.02404 -13.99451 -13.50329 -13.30659 -13.23872 -12.97580 -12.84558 -12.74821 -12.70099 -12.68853 -12.56288 -12.34598 -12.30997 -12.27324 -12.21164 -12.17598 -12.05207 -11.93439 -11.06011 -10.61663 -10.54073 -10.26210 -10.21683 -9.74954 -9.29065 -8.17712 -6.27309 -1.22432 -0.02925 0.32009 0.40542 1.38459 1.40705 1.51697 1.87891 2.11320 2.26285 2.44347 2.94742 3.12390 3.31216 3.52671 3.77241 3.79999 3.93424 3.94523 3.96962 4.00022 4.15456 4.26140 4.29676 4.37338 4.50657 4.56433 4.63325 4.69472 4.74193 4.76500 4.79960 4.83007 4.85897 4.91859 4.99776 5.01964 5.07122 5.12132 5.24874 5.42459 5.53297 5.62433 5.71710 5.87758 5.90841 5.95072 6.16945 6.46686 6.56856 6.78411 7.36859 7.47303 8.88472 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017745 B = 0.002288 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.535671 B =12237.473293 C =12799.945010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.032 3.968 3 H 0.047 0.953 4 C -0.529 4.529 5 H 0.041 0.959 6 C 0.024 3.976 7 N -0.907 5.907 8 Si 0.952 3.048 9 H -0.270 1.270 10 H -0.275 1.275 11 H -0.282 1.282 12 C 0.521 3.479 13 O -0.591 6.591 14 N -0.621 5.621 15 C 0.111 3.889 16 C 0.055 3.945 17 N -0.537 5.537 18 C 0.093 3.907 19 C -0.075 4.075 20 C -0.055 4.055 21 C -0.105 4.105 22 C -0.058 4.058 23 C -0.065 4.065 24 N 0.031 4.969 25 O -0.179 6.179 26 O -0.191 6.191 27 C -0.039 4.039 28 C 0.044 3.956 29 C 0.109 3.891 30 H 0.016 0.984 31 H 0.074 0.926 32 H 0.043 0.957 33 H 0.266 0.734 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.114 0.886 37 H 0.033 0.967 38 H 0.105 0.895 39 H 0.067 0.933 40 H 0.164 0.836 41 H 0.180 0.820 42 H 0.161 0.839 43 H 0.151 0.849 44 H 0.039 0.961 45 H 0.107 0.893 46 H 0.078 0.922 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.035 14.058 -17.310 23.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.011 3.989 3 H 0.064 0.936 4 C -0.568 4.568 5 H 0.060 0.940 6 C -0.176 4.176 7 N -0.546 5.546 8 Si 0.778 3.222 9 H -0.196 1.196 10 H -0.200 1.200 11 H -0.208 1.208 12 C 0.312 3.688 13 O -0.472 6.472 14 N -0.355 5.355 15 C -0.012 4.012 16 C -0.073 4.073 17 N -0.262 5.262 18 C -0.033 4.033 19 C -0.076 4.076 20 C -0.073 4.073 21 C -0.124 4.124 22 C -0.077 4.077 23 C -0.148 4.148 24 N 0.545 4.455 25 O -0.393 6.393 26 O -0.402 6.402 27 C -0.058 4.058 28 C -0.085 4.085 29 C -0.014 4.014 30 H 0.035 0.965 31 H 0.092 0.908 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.132 0.868 37 H 0.051 0.949 38 H 0.124 0.876 39 H 0.085 0.915 40 H 0.181 0.819 41 H 0.197 0.803 42 H 0.179 0.821 43 H 0.169 0.831 44 H 0.057 0.943 45 H 0.125 0.875 46 H 0.097 0.903 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 7.014 13.435 -16.836 22.652 hybrid contribution 0.470 -0.641 0.913 1.210 sum 7.484 12.794 -15.923 21.754 Atomic orbital electron populations 1.21520 0.95482 0.99675 1.00649 1.18765 0.94795 0.96041 0.89262 0.93571 1.21202 1.31952 1.12385 0.91247 0.94043 1.25535 0.95109 0.95715 1.01210 1.69933 1.36904 1.23392 1.24401 0.85642 0.78580 0.78688 0.79267 1.19589 1.19961 1.20767 1.21688 0.75379 0.86625 0.85102 1.90495 1.52187 1.18684 1.85798 1.48355 1.62213 1.14634 1.10278 1.21698 0.96551 0.96388 0.86527 1.22408 0.94715 0.88729 1.01461 1.61948 1.39508 1.02461 1.22288 1.21128 0.92246 0.90053 0.99904 1.19785 0.98896 0.96488 0.92464 1.21995 0.93981 0.91462 0.99879 1.21574 0.96247 0.99932 0.94604 1.21372 0.96082 0.97106 0.93159 1.21324 1.08496 1.00460 0.84567 1.44025 0.98469 0.99601 1.03409 1.94506 1.44463 1.20506 1.79863 1.94537 1.65228 1.28367 1.52077 1.20977 0.92253 0.95561 0.97045 1.22556 0.97172 0.98834 0.89905 1.21981 0.97403 0.79843 1.02173 0.96510 0.90754 0.93782 0.92478 0.90489 0.90997 0.86777 0.94901 0.87629 0.91517 0.81850 0.80275 0.82113 0.83107 0.94317 0.87489 0.90329 0.89328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.35 8.65 71.98 0.62 -4.72 16 2 C 0.03 1.59 1.78 -12.29 -0.02 1.57 16 3 H 0.05 2.25 6.50 -2.39 -0.02 2.23 16 4 C -0.53 -30.15 8.33 25.60 0.21 -29.94 16 5 H 0.04 2.54 7.01 -2.91 -0.02 2.52 16 6 C 0.02 1.31 5.30 84.65 0.45 1.76 16 7 N -0.91 -49.29 11.39 21.44 0.24 -49.05 16 8 Si 0.95 43.89 29.54 68.60 2.03 45.92 16 9 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 10 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 11 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 12 C 0.52 23.87 6.81 87.66 0.60 24.47 16 13 O -0.59 -31.67 15.27 -3.02 -0.05 -31.72 16 14 N -0.62 -21.18 3.01 -817.92 -2.46 -23.64 16 15 C 0.11 3.08 6.58 86.35 0.57 3.65 16 16 C 0.06 1.07 5.62 86.38 0.49 1.56 16 17 N -0.54 -9.09 4.62 -899.82 -4.16 -13.25 16 18 C 0.09 1.02 5.12 85.56 0.44 1.46 16 19 C -0.07 -0.83 4.89 -19.87 -0.10 -0.92 16 20 C -0.05 -0.42 7.86 22.27 0.18 -0.25 16 21 C -0.11 -0.72 10.05 22.27 0.22 -0.50 16 22 C -0.06 -0.68 9.56 22.27 0.21 -0.46 16 23 C -0.07 -1.11 6.85 36.38 0.25 -0.87 16 24 N 0.03 0.73 4.45 -46.46 -0.21 0.52 16 25 O -0.18 -4.39 18.45 18.89 0.35 -4.05 16 26 O -0.19 -4.95 18.45 18.88 0.35 -4.60 16 27 C -0.04 -0.56 9.21 22.27 0.21 -0.36 16 28 C 0.04 0.84 5.34 86.38 0.46 1.30 16 29 C 0.11 2.91 5.91 86.35 0.51 3.42 16 30 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.07 3.69 6.26 -2.38 -0.01 3.67 16 32 H 0.04 1.70 7.41 -2.39 -0.02 1.69 16 33 H 0.27 13.66 8.31 -92.71 -0.77 12.89 16 34 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 35 H 0.07 2.31 7.10 -2.39 -0.02 2.30 16 36 H 0.11 1.58 7.99 -2.38 -0.02 1.56 16 37 H 0.03 0.71 8.14 -2.39 -0.02 0.70 16 38 H 0.11 0.91 7.91 -2.39 -0.02 0.89 16 39 H 0.07 0.62 8.07 -2.39 -0.02 0.60 16 40 H 0.16 0.65 7.93 -2.91 -0.02 0.62 16 41 H 0.18 0.16 8.06 -2.91 -0.02 0.13 16 42 H 0.16 1.54 7.61 -2.91 -0.02 1.52 16 43 H 0.15 2.20 7.61 -2.91 -0.02 2.18 16 44 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 45 H 0.11 1.55 5.66 -2.39 -0.01 1.53 16 46 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 47 H 0.09 2.65 5.27 -2.39 -0.01 2.64 16 Total: -1.00 -73.24 383.76 2.38 -70.86 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: 0.99 Total: 7.83 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: 5.29 Total: 1.17 kcal Atomic # 7 Polarization: -78.83 SS G_CDS: -6.58 Total: -85.41 kcal Atomic # 8 Polarization: -41.01 SS G_CDS: 0.65 Total: -40.36 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -73.24 2.38 -70.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333883629.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.052 kcal (2) G-P(sol) polarization free energy of solvation -73.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds