Wall clock time and date at job start Wed Apr 1 2020 05:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47546 * 2 1 4 4 C 1.53011 * 109.46826 * 240.00019 * 2 1 3 5 5 N 1.46498 * 109.46750 * 65.00219 * 4 2 1 6 6 C 1.34784 * 119.99399 * 179.72394 * 5 4 2 7 7 O 1.21342 * 119.99982 * 0.27710 * 6 5 4 8 8 C 1.49456 * 119.99567 * 180.27172 * 6 5 4 9 9 O 1.21344 * 119.99997 * 0.02562 * 8 6 5 10 10 N 1.34772 * 119.99814 * 179.97438 * 8 6 5 11 11 C 1.47430 * 125.64678 * 359.69844 * 10 8 6 12 12 C 1.55127 * 104.72089 * 155.81761 * 11 10 8 13 13 C 1.55156 * 101.49051 * 37.29225 * 12 11 10 14 14 O 1.42891 * 110.71888 * 82.69459 * 13 12 11 15 15 C 1.50704 * 110.87221 * 205.90185 * 13 12 11 16 16 H 1.08000 * 119.99949 * 118.67308 * 15 13 12 17 17 C 1.37878 * 119.99826 * 298.66754 * 15 13 12 18 18 N 1.31514 * 119.99813 * 183.38825 * 17 15 13 19 19 Si 1.86796 * 120.00050 * 3.39018 * 17 15 13 20 20 H 1.48511 * 109.46904 * 84.83631 * 19 17 15 21 21 H 1.48496 * 109.47107 * 204.83298 * 19 17 15 22 22 H 1.48493 * 109.47235 * 324.83726 * 19 17 15 23 23 C 1.47022 * 125.64971 * 179.97438 * 10 8 6 24 24 C 1.50696 * 109.47200 * 120.00207 * 2 1 3 25 25 C 1.38654 * 120.78967 * 59.72143 * 24 2 1 26 26 C 1.38207 * 119.15969 * 179.75801 * 25 24 2 27 27 N 1.31863 * 120.76436 * 0.52573 * 26 25 24 28 28 C 1.31871 * 121.72996 * 359.74138 * 27 26 25 29 29 C 1.38204 * 120.75921 * 359.97438 * 28 27 26 30 30 H 1.09000 * 109.47546 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47082 * 300.00017 * 1 2 3 32 32 H 1.09000 * 109.47409 * 59.99914 * 1 2 3 33 33 H 1.08993 * 109.46940 * 304.99845 * 4 2 1 34 34 H 1.08997 * 109.46988 * 185.00051 * 4 2 1 35 35 H 0.96994 * 120.00430 * 359.97438 * 5 4 2 36 36 H 1.09004 * 110.36320 * 274.74336 * 11 10 8 37 37 H 1.08995 * 110.36861 * 37.06855 * 11 10 8 38 38 H 1.09006 * 111.19133 * 279.18849 * 12 11 10 39 39 H 1.09002 * 110.90923 * 155.27926 * 12 11 10 40 40 H 0.96698 * 114.00211 * 185.02315 * 14 13 12 41 41 H 0.96995 * 119.99788 * 179.97438 * 18 17 15 42 42 H 1.09002 * 109.88413 * 300.44306 * 23 10 8 43 43 H 1.09004 * 109.88164 * 61.45455 * 23 10 8 44 44 H 1.08004 * 120.41641 * 359.97438 * 25 24 2 45 45 H 1.08002 * 119.61702 * 180.29131 * 26 25 24 46 46 H 1.08002 * 119.62109 * 180.02562 * 28 27 26 47 47 H 1.08000 * 120.41692 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2494 5 7 1.6523 0.0354 -2.4424 6 6 2.0007 -0.4105 -3.6657 7 8 2.6309 -1.4411 -3.7791 8 6 1.6105 0.3647 -4.8826 9 8 0.9806 1.3956 -4.7691 10 7 1.9593 -0.0808 -6.1058 11 6 2.7271 -1.3076 -6.3867 12 6 2.3334 -1.6958 -7.8361 13 6 2.2181 -0.3024 -8.5088 14 8 3.5039 0.1711 -8.9143 15 6 1.2745 -0.3494 -9.6829 16 1 0.3815 0.2580 -9.6827 17 6 1.5514 -1.1677 -10.7575 18 7 0.7637 -1.1592 -11.8106 19 14 3.0453 -2.2884 -10.7175 20 1 2.6967 -3.5533 -10.0216 21 1 3.4752 -2.5900 -12.1065 22 1 4.1514 -1.6132 -9.9925 23 6 1.6420 0.5791 -7.3807 24 6 2.0323 -0.7104 1.2304 25 6 1.7027 -2.0359 1.4689 26 6 2.1860 -2.6560 2.6056 27 7 2.9430 -1.9989 3.4623 28 6 3.2721 -0.7363 3.2706 29 6 2.8305 -0.0526 2.1536 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.6053 -1.7198 -1.2952 34 1 3.1262 -0.7995 -1.2057 35 1 1.1482 0.8591 -2.3518 36 1 3.7969 -1.1087 -6.3221 37 1 2.4449 -2.0991 -5.6925 38 1 1.3781 -2.2204 -7.8579 39 1 3.1157 -2.2926 -8.3051 40 1 3.4976 1.0701 -9.2705 41 1 0.9587 -1.7347 -12.5667 42 1 0.5614 0.6669 -7.4938 43 1 2.0992 1.5682 -7.4100 44 1 1.0790 -2.5780 0.7734 45 1 1.9378 -3.6897 2.7962 46 1 3.8945 -0.2311 3.9943 47 1 3.1037 0.9812 2.0020 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336157799.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:29 Heat of formation + Delta-G solvation = -68.597097 kcal Electronic energy + Delta-G solvation = -29996.728201 eV Core-core repulsion = 25759.073734 eV Total energy + Delta-G solvation = -4237.654468 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.89832 -40.49996 -38.88904 -37.57644 -36.99556 -34.78369 -33.84602 -32.46760 -31.67276 -30.84508 -30.41770 -28.54971 -27.51647 -25.94235 -24.64110 -23.91890 -23.19311 -22.04426 -21.02883 -20.15454 -19.64620 -17.81768 -17.54000 -17.34963 -16.67867 -16.61533 -16.09569 -15.96795 -15.67233 -15.25742 -15.03306 -14.69597 -14.64751 -14.32942 -14.10222 -13.91293 -13.83483 -13.37082 -13.32857 -13.10126 -13.03094 -12.62670 -12.40431 -12.22753 -12.12653 -11.93888 -11.85486 -11.42719 -11.40235 -11.32092 -10.98506 -10.58966 -10.33338 -10.13168 -10.03250 -9.90092 -9.58926 -9.45685 -9.32259 -9.06190 -8.78897 -8.56649 -8.35453 -6.25516 -4.38251 0.70336 0.77108 1.52728 2.35292 3.28033 3.32342 3.36883 3.40127 3.56884 3.58946 4.03348 4.06168 4.09326 4.38684 4.38803 4.46463 4.55796 4.64722 4.71474 4.78030 5.03679 5.16248 5.17280 5.19880 5.20236 5.31532 5.32337 5.35725 5.48079 5.55175 5.62483 5.69032 5.73778 5.90270 5.93233 5.96103 6.15879 6.25808 6.35528 6.40976 6.56809 6.62337 6.96388 7.06640 7.39922 7.55275 7.60078 7.73665 8.12510 8.14415 8.68328 8.83838 9.37083 10.84576 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.025264 B = 0.001988 C = 0.001925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.047918 B =14079.919222 C =14540.729338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.066 4.066 3 H 0.093 0.907 4 C 0.128 3.872 5 N -0.706 5.706 6 C 0.512 3.488 7 O -0.512 6.512 8 C 0.511 3.489 9 O -0.537 6.537 10 N -0.574 5.574 11 C 0.098 3.902 12 C -0.129 4.129 13 C 0.216 3.784 14 O -0.572 6.572 15 C -0.552 4.552 16 H 0.079 0.921 17 C 0.090 3.910 18 N -0.885 5.885 19 Si 0.875 3.125 20 H -0.282 1.282 21 H -0.300 1.300 22 H -0.228 1.228 23 C 0.093 3.907 24 C -0.031 4.031 25 C -0.165 4.165 26 C 0.101 3.899 27 N -0.489 5.489 28 C 0.100 3.900 29 C -0.167 4.167 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.412 0.588 36 H 0.071 0.929 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.077 0.923 40 H 0.365 0.635 41 H 0.268 0.732 42 H 0.081 0.919 43 H 0.065 0.935 44 H 0.136 0.864 45 H 0.156 0.844 46 H 0.156 0.844 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.361 1.290 26.863 26.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.085 4.085 3 H 0.111 0.889 4 C 0.004 3.996 5 N -0.361 5.361 6 C 0.293 3.707 7 O -0.387 6.387 8 C 0.294 3.706 9 O -0.416 6.416 10 N -0.306 5.306 11 C -0.024 4.024 12 C -0.167 4.167 13 C 0.175 3.825 14 O -0.378 6.378 15 C -0.590 4.590 16 H 0.097 0.903 17 C -0.116 4.116 18 N -0.521 5.521 19 Si 0.703 3.297 20 H -0.208 1.208 21 H -0.227 1.227 22 H -0.151 1.151 23 C -0.029 4.029 24 C -0.039 4.039 25 C -0.185 4.185 26 C -0.056 4.056 27 N -0.198 5.198 28 C -0.057 4.057 29 C -0.187 4.187 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.249 0.751 36 H 0.090 0.910 37 H 0.110 0.890 38 H 0.108 0.892 39 H 0.096 0.904 40 H 0.213 0.787 41 H 0.077 0.923 42 H 0.099 0.901 43 H 0.083 0.917 44 H 0.154 0.846 45 H 0.174 0.826 46 H 0.173 0.827 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 2.918 0.013 27.682 27.836 hybrid contribution -0.088 0.721 -1.045 1.273 sum 2.830 0.734 26.637 26.797 Atomic orbital electron populations 1.21907 0.92839 1.03042 1.02783 1.20423 0.97278 0.99888 0.90904 0.88878 1.21451 1.00678 0.95360 0.82115 1.45703 1.57217 1.28339 1.04812 1.20269 0.80208 0.85559 0.84662 1.90731 1.38117 1.23548 1.86256 1.19558 0.81794 0.85696 0.83587 1.90727 1.40615 1.24203 1.86026 1.48452 1.51443 1.25532 1.05139 1.22769 0.95711 0.86066 0.97855 1.23206 1.02379 0.98301 0.92853 1.20010 0.82360 0.89118 0.90969 1.86519 1.32332 1.34723 1.84248 1.21150 1.08743 1.28180 1.00903 0.90274 1.24942 0.96155 0.96015 0.94480 1.69921 1.38002 1.38304 1.05863 0.87076 0.85367 0.80520 0.76777 1.20840 1.22709 1.15064 1.23026 1.01827 0.96611 0.81425 1.20062 0.94802 0.94004 0.95051 1.22075 1.01831 0.95170 0.99429 1.22797 0.92790 1.00025 0.89966 1.67687 1.12291 1.09232 1.30567 1.22786 0.96743 0.90378 0.95811 1.22101 0.99269 1.01645 0.95684 0.91803 0.91847 0.91383 0.90539 0.90734 0.75091 0.91041 0.89025 0.89244 0.90444 0.78737 0.92270 0.90091 0.91696 0.84577 0.82626 0.82688 0.84642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 8.89 37.16 0.33 -0.49 16 2 C -0.07 -0.39 2.63 -91.77 -0.24 -0.63 16 3 H 0.09 0.47 7.95 -51.93 -0.41 0.06 16 4 C 0.13 1.05 4.82 -4.04 -0.02 1.03 16 5 N -0.71 -7.36 5.28 -60.73 -0.32 -7.68 16 6 C 0.51 7.39 7.86 -11.58 -0.09 7.30 16 7 O -0.51 -8.28 13.77 5.50 0.08 -8.20 16 8 C 0.51 8.74 7.91 -11.58 -0.09 8.65 16 9 O -0.54 -9.85 16.80 5.50 0.09 -9.76 16 10 N -0.57 -10.57 3.32 -170.88 -0.57 -11.14 16 11 C 0.10 1.76 6.07 -2.41 -0.01 1.75 16 12 C -0.13 -2.65 4.83 -24.47 -0.12 -2.77 16 13 C 0.22 4.71 0.67 -89.93 -0.06 4.65 16 14 O -0.57 -12.12 10.45 -35.23 -0.37 -12.49 16 15 C -0.55 -14.39 8.82 -34.44 -0.30 -14.69 16 16 H 0.08 2.24 7.82 -52.49 -0.41 1.83 16 17 C 0.09 2.45 5.47 -17.82 -0.10 2.35 16 18 N -0.89 -25.78 13.96 55.43 0.77 -25.01 16 19 Si 0.87 20.88 23.89 -169.99 -4.06 16.82 16 20 H -0.28 -6.56 7.09 56.52 0.40 -6.16 16 21 H -0.30 -7.31 7.11 56.52 0.40 -6.90 16 22 H -0.23 -5.30 5.50 56.52 0.31 -4.99 16 23 C 0.09 1.84 6.21 -3.06 -0.02 1.82 16 24 C -0.03 -0.20 4.80 -104.32 -0.50 -0.70 16 25 C -0.17 -1.10 8.90 -39.44 -0.35 -1.45 16 26 C 0.10 0.74 11.18 -17.55 -0.20 0.55 16 27 N -0.49 -4.35 10.36 -13.25 -0.14 -4.49 16 28 C 0.10 0.71 11.18 -17.55 -0.20 0.51 16 29 C -0.17 -1.04 9.76 -39.44 -0.39 -1.43 16 30 H 0.06 0.35 7.46 -51.93 -0.39 -0.04 16 31 H 0.06 0.32 8.14 -51.92 -0.42 -0.10 16 32 H 0.07 0.39 7.18 -51.93 -0.37 0.02 16 33 H 0.08 0.65 7.68 -51.93 -0.40 0.25 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.41 3.79 7.12 -40.82 -0.29 3.50 16 36 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.09 1.57 6.14 -51.93 -0.32 1.25 16 38 H 0.09 1.84 8.05 -51.93 -0.42 1.43 16 39 H 0.08 1.61 5.00 -51.93 -0.26 1.35 16 40 H 0.37 6.67 9.08 45.56 0.41 7.08 16 41 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 42 H 0.08 1.69 7.66 -51.93 -0.40 1.29 16 43 H 0.06 1.23 8.06 -51.93 -0.42 0.81 16 44 H 0.14 0.71 7.35 -52.48 -0.39 0.32 16 45 H 0.16 0.80 8.06 -52.49 -0.42 0.38 16 46 H 0.16 0.72 8.06 -52.49 -0.42 0.30 16 47 H 0.14 0.57 8.01 -52.49 -0.42 0.15 16 LS Contribution 380.92 15.07 5.74 5.74 Total: -1.00 -32.83 380.92 -6.95 -39.78 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -5.82 Total: 9.95 kcal Atomic # 6 Polarization: 8.81 SS G_CDS: -2.35 Total: 6.46 kcal Atomic # 7 Polarization: -48.05 SS G_CDS: -0.25 Total: -48.30 kcal Atomic # 8 Polarization: -30.25 SS G_CDS: -0.20 Total: -30.45 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.06 Total: 16.82 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.83 -6.95 -39.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336157799.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.818 kcal (2) G-P(sol) polarization free energy of solvation -32.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds