Wall clock time and date at job start Wed Apr 1 2020 05:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47546 * 2 1 4 4 C 1.53011 * 109.46826 * 240.00019 * 2 1 3 5 5 N 1.46498 * 109.46750 * 65.00219 * 4 2 1 6 6 C 1.34784 * 119.99399 * 179.72394 * 5 4 2 7 7 O 1.21342 * 119.99982 * 0.27710 * 6 5 4 8 8 C 1.49456 * 119.99567 * 180.27172 * 6 5 4 9 9 O 1.21344 * 119.99997 * 0.02562 * 8 6 5 10 10 N 1.34772 * 119.99814 * 179.97438 * 8 6 5 11 11 C 1.47430 * 125.64678 * 359.69844 * 10 8 6 12 12 C 1.55127 * 104.72089 * 155.81761 * 11 10 8 13 13 C 1.55156 * 101.49051 * 37.29225 * 12 11 10 14 14 O 1.42891 * 110.71888 * 82.69459 * 13 12 11 15 15 C 1.50704 * 110.87221 * 205.90185 * 13 12 11 16 16 H 1.08000 * 119.99949 * 118.67308 * 15 13 12 17 17 C 1.37878 * 119.99826 * 298.66754 * 15 13 12 18 18 N 1.31514 * 119.99813 * 183.38825 * 17 15 13 19 19 Si 1.86796 * 120.00050 * 3.39018 * 17 15 13 20 20 H 1.48511 * 109.46904 * 84.83631 * 19 17 15 21 21 H 1.48496 * 109.47107 * 204.83298 * 19 17 15 22 22 H 1.48493 * 109.47235 * 324.83726 * 19 17 15 23 23 C 1.47022 * 125.64971 * 179.97438 * 10 8 6 24 24 C 1.50696 * 109.47200 * 120.00207 * 2 1 3 25 25 C 1.38654 * 120.78967 * 59.72143 * 24 2 1 26 26 C 1.38207 * 119.15969 * 179.75801 * 25 24 2 27 27 N 1.31863 * 120.76436 * 0.52573 * 26 25 24 28 28 C 1.31871 * 121.72996 * 359.74138 * 27 26 25 29 29 C 1.38204 * 120.75921 * 359.97438 * 28 27 26 30 30 H 1.09000 * 109.47546 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47082 * 300.00017 * 1 2 3 32 32 H 1.09000 * 109.47409 * 59.99914 * 1 2 3 33 33 H 1.08993 * 109.46940 * 304.99845 * 4 2 1 34 34 H 1.08997 * 109.46988 * 185.00051 * 4 2 1 35 35 H 0.96994 * 120.00430 * 359.97438 * 5 4 2 36 36 H 1.09004 * 110.36320 * 274.74336 * 11 10 8 37 37 H 1.08995 * 110.36861 * 37.06855 * 11 10 8 38 38 H 1.09006 * 111.19133 * 279.18849 * 12 11 10 39 39 H 1.09002 * 110.90923 * 155.27926 * 12 11 10 40 40 H 0.96698 * 114.00211 * 185.02315 * 14 13 12 41 41 H 0.96995 * 119.99788 * 179.97438 * 18 17 15 42 42 H 1.09002 * 109.88413 * 300.44306 * 23 10 8 43 43 H 1.09004 * 109.88164 * 61.45455 * 23 10 8 44 44 H 1.08004 * 120.41641 * 359.97438 * 25 24 2 45 45 H 1.08002 * 119.61702 * 180.29131 * 26 25 24 46 46 H 1.08002 * 119.62109 * 180.02562 * 28 27 26 47 47 H 1.08000 * 120.41692 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2494 5 7 1.6523 0.0354 -2.4424 6 6 2.0007 -0.4105 -3.6657 7 8 2.6309 -1.4411 -3.7791 8 6 1.6105 0.3647 -4.8826 9 8 0.9806 1.3956 -4.7691 10 7 1.9593 -0.0808 -6.1058 11 6 2.7271 -1.3076 -6.3867 12 6 2.3334 -1.6958 -7.8361 13 6 2.2181 -0.3024 -8.5088 14 8 3.5039 0.1711 -8.9143 15 6 1.2745 -0.3494 -9.6829 16 1 0.3815 0.2580 -9.6827 17 6 1.5514 -1.1677 -10.7575 18 7 0.7637 -1.1592 -11.8106 19 14 3.0453 -2.2884 -10.7175 20 1 2.6967 -3.5533 -10.0216 21 1 3.4752 -2.5900 -12.1065 22 1 4.1514 -1.6132 -9.9925 23 6 1.6420 0.5791 -7.3807 24 6 2.0323 -0.7104 1.2304 25 6 1.7027 -2.0359 1.4689 26 6 2.1860 -2.6560 2.6056 27 7 2.9430 -1.9989 3.4623 28 6 3.2721 -0.7363 3.2706 29 6 2.8305 -0.0526 2.1536 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.6053 -1.7198 -1.2952 34 1 3.1262 -0.7995 -1.2057 35 1 1.1482 0.8591 -2.3518 36 1 3.7969 -1.1087 -6.3221 37 1 2.4449 -2.0991 -5.6925 38 1 1.3781 -2.2204 -7.8579 39 1 3.1157 -2.2926 -8.3051 40 1 3.4976 1.0701 -9.2705 41 1 0.9587 -1.7347 -12.5667 42 1 0.5614 0.6669 -7.4938 43 1 2.0992 1.5682 -7.4100 44 1 1.0790 -2.5780 0.7734 45 1 1.9378 -3.6897 2.7962 46 1 3.8945 -0.2311 3.9943 47 1 3.1037 0.9812 2.0020 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336157799.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:28 Heat of formation + Delta-G solvation = -94.279537 kcal Electronic energy + Delta-G solvation = -29997.841876 eV Core-core repulsion = 25759.073734 eV Total energy + Delta-G solvation = -4238.768142 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.95172 -41.22275 -40.19741 -39.04999 -37.74968 -36.28957 -34.73119 -34.51288 -32.14180 -32.04187 -31.40593 -30.14698 -28.46728 -27.38922 -25.51083 -24.65758 -24.23256 -23.32800 -21.73996 -21.57818 -20.97300 -19.52608 -18.89760 -18.20302 -17.68623 -17.32078 -17.21043 -16.94479 -16.77535 -16.51775 -16.38369 -16.09308 -15.69848 -15.20932 -15.04956 -14.85580 -14.81201 -14.56469 -14.42561 -14.32455 -14.17079 -14.05476 -13.82693 -13.45057 -13.18708 -12.94457 -12.92596 -12.61628 -12.51850 -12.42114 -12.35419 -12.17621 -11.87359 -11.83029 -10.97414 -10.81975 -10.69008 -10.51537 -10.42970 -10.38083 -10.32502 -10.05822 -9.83208 -8.36541 -6.51982 0.23002 0.26623 0.29080 1.18746 1.38716 1.46796 1.68381 2.07051 2.39026 2.39829 2.87397 2.99313 3.21182 3.53349 3.55534 3.58210 3.64830 3.73912 3.88372 3.96659 4.08822 4.19727 4.22250 4.25384 4.33572 4.35728 4.59612 4.62724 4.65713 4.75107 4.75541 4.83493 4.86688 4.92118 4.94825 4.97488 5.03176 5.06657 5.18244 5.26480 5.36353 5.44404 5.48744 5.80173 5.94752 6.05868 6.25341 6.57075 6.59664 6.86734 7.06097 7.12673 7.29642 8.77126 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.025264 B = 0.001988 C = 0.001925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.047918 B =14079.919222 C =14540.729338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.054 4.054 3 H 0.107 0.893 4 C 0.127 3.873 5 N -0.685 5.685 6 C 0.517 3.483 7 O -0.530 6.530 8 C 0.510 3.490 9 O -0.551 6.551 10 N -0.582 5.582 11 C 0.112 3.888 12 C -0.133 4.133 13 C 0.216 3.784 14 O -0.572 6.572 15 C -0.550 4.550 16 H 0.042 0.958 17 C 0.039 3.961 18 N -0.933 5.933 19 Si 0.933 3.067 20 H -0.270 1.270 21 H -0.308 1.308 22 H -0.214 1.214 23 C 0.101 3.899 24 C -0.037 4.037 25 C -0.169 4.169 26 C 0.086 3.914 27 N -0.519 5.519 28 C 0.086 3.914 29 C -0.167 4.167 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.420 0.580 36 H 0.079 0.921 37 H 0.104 0.896 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.378 0.622 41 H 0.268 0.732 42 H 0.063 0.937 43 H 0.074 0.926 44 H 0.148 0.852 45 H 0.170 0.830 46 H 0.173 0.827 47 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.645 1.302 29.113 29.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.073 4.073 3 H 0.125 0.875 4 C 0.005 3.995 5 N -0.339 5.339 6 C 0.297 3.703 7 O -0.407 6.407 8 C 0.294 3.706 9 O -0.430 6.430 10 N -0.314 5.314 11 C -0.010 4.010 12 C -0.170 4.170 13 C 0.176 3.824 14 O -0.380 6.380 15 C -0.587 4.587 16 H 0.061 0.939 17 C -0.162 4.162 18 N -0.571 5.571 19 Si 0.759 3.241 20 H -0.196 1.196 21 H -0.236 1.236 22 H -0.136 1.136 23 C -0.022 4.022 24 C -0.046 4.046 25 C -0.188 4.188 26 C -0.070 4.070 27 N -0.229 5.229 28 C -0.070 4.070 29 C -0.186 4.186 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.258 0.742 36 H 0.097 0.903 37 H 0.122 0.878 38 H 0.101 0.899 39 H 0.097 0.903 40 H 0.227 0.773 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.092 0.908 44 H 0.166 0.834 45 H 0.187 0.813 46 H 0.191 0.809 47 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 4.191 0.055 29.991 30.283 hybrid contribution -0.574 0.831 -1.674 1.955 sum 3.617 0.886 28.317 28.561 Atomic orbital electron populations 1.21912 0.92464 1.03162 1.03020 1.20335 0.97424 1.00183 0.89323 0.87451 1.21602 1.00565 0.95483 0.81874 1.45655 1.55715 1.28327 1.04155 1.19742 0.80583 0.85159 0.84793 1.90725 1.39368 1.24173 1.86386 1.20096 0.80972 0.85602 0.83967 1.90718 1.41032 1.24946 1.86336 1.48451 1.52094 1.25723 1.05115 1.22674 0.95981 0.86131 0.96191 1.23165 1.02202 0.97168 0.94515 1.19821 0.81794 0.90795 0.89999 1.86462 1.31267 1.35924 1.84375 1.21378 1.08225 1.26741 1.02380 0.93949 1.25722 0.98800 0.97540 0.94126 1.70048 1.40261 1.39919 1.06916 0.86169 0.82375 0.79196 0.76381 1.19578 1.23593 1.13649 1.22709 1.00654 0.96816 0.81978 1.20178 0.94976 0.94088 0.95326 1.22245 1.01766 0.95456 0.99374 1.23103 0.92877 1.00840 0.90204 1.67683 1.13298 1.10319 1.31584 1.23170 0.97050 0.90123 0.96676 1.22351 0.98557 1.02611 0.95106 0.91814 0.91190 0.91556 0.90431 0.91075 0.74159 0.90254 0.87791 0.89943 0.90317 0.77276 0.92284 0.91857 0.90767 0.83401 0.81301 0.80946 0.82481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 8.89 71.98 0.64 -0.62 16 2 C -0.05 -0.48 2.63 -11.54 -0.03 -0.51 16 3 H 0.11 0.70 7.95 -2.39 -0.02 0.68 16 4 C 0.13 1.76 4.82 86.38 0.42 2.18 16 5 N -0.68 -12.47 5.28 -464.40 -2.45 -14.92 16 6 C 0.52 13.74 7.86 87.27 0.69 14.42 16 7 O -0.53 -15.83 13.77 -3.22 -0.04 -15.88 16 8 C 0.51 16.53 7.91 87.27 0.69 17.22 16 9 O -0.55 -19.35 16.80 -3.23 -0.05 -19.41 16 10 N -0.58 -20.51 3.32 -812.91 -2.70 -23.21 16 11 C 0.11 3.78 6.07 86.93 0.53 4.31 16 12 C -0.13 -5.21 4.83 32.06 0.15 -5.06 16 13 C 0.22 9.28 0.67 -10.35 -0.01 9.27 16 14 O -0.57 -23.18 10.45 -148.98 -1.56 -24.73 16 15 C -0.55 -29.09 8.82 25.60 0.23 -28.86 16 16 H 0.04 2.50 7.82 -2.91 -0.02 2.48 16 17 C 0.04 2.14 5.47 84.65 0.46 2.61 16 18 N -0.93 -55.73 13.96 21.45 0.30 -55.44 16 19 Si 0.93 42.81 23.89 68.60 1.64 44.45 16 20 H -0.27 -11.79 7.09 99.48 0.70 -11.08 16 21 H -0.31 -14.45 7.11 99.48 0.71 -13.75 16 22 H -0.21 -9.29 5.50 99.48 0.55 -8.74 16 23 C 0.10 3.94 6.21 86.73 0.54 4.48 16 24 C -0.04 -0.40 4.80 -19.67 -0.09 -0.49 16 25 C -0.17 -1.95 8.90 22.36 0.20 -1.75 16 26 C 0.09 1.18 11.18 84.68 0.95 2.12 16 27 N -0.52 -8.77 10.36 -195.84 -2.03 -10.80 16 28 C 0.09 1.09 11.18 84.68 0.95 2.04 16 29 C -0.17 -1.69 9.76 22.36 0.22 -1.47 16 30 H 0.06 0.55 7.46 -2.39 -0.02 0.54 16 31 H 0.07 0.53 8.14 -2.38 -0.02 0.51 16 32 H 0.07 0.60 7.18 -2.39 -0.02 0.58 16 33 H 0.08 1.12 7.68 -2.39 -0.02 1.10 16 34 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.42 6.56 7.12 -92.71 -0.66 5.90 16 36 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 37 H 0.10 3.30 6.14 -2.39 -0.01 3.29 16 38 H 0.08 3.33 8.05 -2.38 -0.02 3.31 16 39 H 0.08 3.08 5.00 -2.39 -0.01 3.06 16 40 H 0.38 13.17 9.08 -74.06 -0.67 12.50 16 41 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 42 H 0.06 2.68 7.66 -2.39 -0.02 2.66 16 43 H 0.07 2.73 8.06 -2.39 -0.02 2.71 16 44 H 0.15 1.25 7.35 -2.91 -0.02 1.23 16 45 H 0.17 1.60 8.06 -2.91 -0.02 1.58 16 46 H 0.17 1.34 8.06 -2.91 -0.02 1.31 16 47 H 0.16 0.82 8.01 -2.91 -0.02 0.79 16 Total: -1.00 -70.52 380.92 -0.85 -71.38 By element: Atomic # 1 Polarization: 29.15 SS G_CDS: -0.47 Total: 28.67 kcal Atomic # 6 Polarization: 13.36 SS G_CDS: 6.52 Total: 19.88 kcal Atomic # 7 Polarization: -97.49 SS G_CDS: -6.88 Total: -104.37 kcal Atomic # 8 Polarization: -58.36 SS G_CDS: -1.65 Total: -60.02 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 1.64 Total: 44.45 kcal Total: -70.52 -0.85 -71.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336157799.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.904 kcal (2) G-P(sol) polarization free energy of solvation -70.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds