Wall clock time and date at job start Wed Apr 1 2020 05:07:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.09000 * 109.47546 * 2 1
4 4 C 1.53011 * 109.46826 * 240.00019 * 2 1 3
5 5 N 1.46498 * 109.46750 * 65.00219 * 4 2 1
6 6 C 1.34784 * 119.99399 * 179.72394 * 5 4 2
7 7 O 1.21342 * 119.99982 * 0.27710 * 6 5 4
8 8 C 1.49456 * 119.99567 * 180.27172 * 6 5 4
9 9 O 1.21344 * 119.99997 * 0.02562 * 8 6 5
10 10 N 1.34772 * 119.99814 * 179.97438 * 8 6 5
11 11 C 1.47430 * 125.64678 * 359.69844 * 10 8 6
12 12 C 1.55127 * 104.72089 * 155.81761 * 11 10 8
13 13 C 1.55156 * 101.49051 * 37.29225 * 12 11 10
14 14 O 1.42891 * 110.71888 * 82.69459 * 13 12 11
15 15 C 1.50704 * 110.87221 * 205.90185 * 13 12 11
16 16 H 1.08000 * 119.99949 * 118.67308 * 15 13 12
17 17 C 1.37878 * 119.99826 * 298.66754 * 15 13 12
18 18 N 1.31514 * 119.99813 * 183.38825 * 17 15 13
19 19 Si 1.86796 * 120.00050 * 3.39018 * 17 15 13
20 20 H 1.48511 * 109.46904 * 84.83631 * 19 17 15
21 21 H 1.48496 * 109.47107 * 204.83298 * 19 17 15
22 22 H 1.48493 * 109.47235 * 324.83726 * 19 17 15
23 23 C 1.47022 * 125.64971 * 179.97438 * 10 8 6
24 24 C 1.50696 * 109.47200 * 120.00207 * 2 1 3
25 25 C 1.38654 * 120.78967 * 59.72143 * 24 2 1
26 26 C 1.38207 * 119.15969 * 179.75801 * 25 24 2
27 27 N 1.31863 * 120.76436 * 0.52573 * 26 25 24
28 28 C 1.31871 * 121.72996 * 359.74138 * 27 26 25
29 29 C 1.38204 * 120.75921 * 359.97438 * 28 27 26
30 30 H 1.09000 * 109.47546 * 180.02562 * 1 2 3
31 31 H 1.09007 * 109.47082 * 300.00017 * 1 2 3
32 32 H 1.09000 * 109.47409 * 59.99914 * 1 2 3
33 33 H 1.08993 * 109.46940 * 304.99845 * 4 2 1
34 34 H 1.08997 * 109.46988 * 185.00051 * 4 2 1
35 35 H 0.96994 * 120.00430 * 359.97438 * 5 4 2
36 36 H 1.09004 * 110.36320 * 274.74336 * 11 10 8
37 37 H 1.08995 * 110.36861 * 37.06855 * 11 10 8
38 38 H 1.09006 * 111.19133 * 279.18849 * 12 11 10
39 39 H 1.09002 * 110.90923 * 155.27926 * 12 11 10
40 40 H 0.96698 * 114.00211 * 185.02315 * 14 13 12
41 41 H 0.96995 * 119.99788 * 179.97438 * 18 17 15
42 42 H 1.09002 * 109.88413 * 300.44306 * 23 10 8
43 43 H 1.09004 * 109.88164 * 61.45455 * 23 10 8
44 44 H 1.08004 * 120.41641 * 359.97438 * 25 24 2
45 45 H 1.08002 * 119.61702 * 180.29131 * 26 25 24
46 46 H 1.08002 * 119.62109 * 180.02562 * 28 27 26
47 47 H 1.08000 * 120.41692 * 180.02562 * 29 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0399 -0.7213 -1.2494
5 7 1.6523 0.0354 -2.4424
6 6 2.0007 -0.4105 -3.6657
7 8 2.6309 -1.4411 -3.7791
8 6 1.6105 0.3647 -4.8826
9 8 0.9806 1.3956 -4.7691
10 7 1.9593 -0.0808 -6.1058
11 6 2.7271 -1.3076 -6.3867
12 6 2.3334 -1.6958 -7.8361
13 6 2.2181 -0.3024 -8.5088
14 8 3.5039 0.1711 -8.9143
15 6 1.2745 -0.3494 -9.6829
16 1 0.3815 0.2580 -9.6827
17 6 1.5514 -1.1677 -10.7575
18 7 0.7637 -1.1592 -11.8106
19 14 3.0453 -2.2884 -10.7175
20 1 2.6967 -3.5533 -10.0216
21 1 3.4752 -2.5900 -12.1065
22 1 4.1514 -1.6132 -9.9925
23 6 1.6420 0.5791 -7.3807
24 6 2.0323 -0.7104 1.2304
25 6 1.7027 -2.0359 1.4689
26 6 2.1860 -2.6560 2.6056
27 7 2.9430 -1.9989 3.4623
28 6 3.2721 -0.7363 3.2706
29 6 2.8305 -0.0526 2.1536
30 1 -0.3634 -1.0276 0.0005
31 1 -0.3634 0.5139 0.8900
32 1 -0.3634 0.5138 -0.8900
33 1 1.6053 -1.7198 -1.2952
34 1 3.1262 -0.7995 -1.2057
35 1 1.1482 0.8591 -2.3518
36 1 3.7969 -1.1087 -6.3221
37 1 2.4449 -2.0991 -5.6925
38 1 1.3781 -2.2204 -7.8579
39 1 3.1157 -2.2926 -8.3051
40 1 3.4976 1.0701 -9.2705
41 1 0.9587 -1.7347 -12.5667
42 1 0.5614 0.6669 -7.4938
43 1 2.0992 1.5682 -7.4100
44 1 1.0790 -2.5780 0.7734
45 1 1.9378 -3.6897 2.7962
46 1 3.8945 -0.2311 3.9943
47 1 3.1037 0.9812 2.0020
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001336157799.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:07:28
Heat of formation + Delta-G solvation = -94.279537 kcal
Electronic energy + Delta-G solvation = -29997.841876 eV
Core-core repulsion = 25759.073734 eV
Total energy + Delta-G solvation = -4238.768142 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.168 amu
Computer time = 0.84 seconds
Orbital eigenvalues (eV)
-41.95172 -41.22275 -40.19741 -39.04999 -37.74968 -36.28957 -34.73119 -34.51288
-32.14180 -32.04187 -31.40593 -30.14698 -28.46728 -27.38922 -25.51083 -24.65758
-24.23256 -23.32800 -21.73996 -21.57818 -20.97300 -19.52608 -18.89760 -18.20302
-17.68623 -17.32078 -17.21043 -16.94479 -16.77535 -16.51775 -16.38369 -16.09308
-15.69848 -15.20932 -15.04956 -14.85580 -14.81201 -14.56469 -14.42561 -14.32455
-14.17079 -14.05476 -13.82693 -13.45057 -13.18708 -12.94457 -12.92596 -12.61628
-12.51850 -12.42114 -12.35419 -12.17621 -11.87359 -11.83029 -10.97414 -10.81975
-10.69008 -10.51537 -10.42970 -10.38083 -10.32502 -10.05822 -9.83208 -8.36541
-6.51982 0.23002 0.26623 0.29080 1.18746 1.38716 1.46796 1.68381
2.07051 2.39026 2.39829 2.87397 2.99313 3.21182 3.53349 3.55534
3.58210 3.64830 3.73912 3.88372 3.96659 4.08822 4.19727 4.22250
4.25384 4.33572 4.35728 4.59612 4.62724 4.65713 4.75107 4.75541
4.83493 4.86688 4.92118 4.94825 4.97488 5.03176 5.06657 5.18244
5.26480 5.36353 5.44404 5.48744 5.80173 5.94752 6.05868 6.25341
6.57075 6.59664 6.86734 7.06097 7.12673 7.29642 8.77126
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.025264 B = 0.001988 C = 0.001925
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1108.047918 B =14079.919222 C =14540.729338
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C -0.054 4.054
3 H 0.107 0.893
4 C 0.127 3.873
5 N -0.685 5.685
6 C 0.517 3.483
7 O -0.530 6.530
8 C 0.510 3.490
9 O -0.551 6.551
10 N -0.582 5.582
11 C 0.112 3.888
12 C -0.133 4.133
13 C 0.216 3.784
14 O -0.572 6.572
15 C -0.550 4.550
16 H 0.042 0.958
17 C 0.039 3.961
18 N -0.933 5.933
19 Si 0.933 3.067
20 H -0.270 1.270
21 H -0.308 1.308
22 H -0.214 1.214
23 C 0.101 3.899
24 C -0.037 4.037
25 C -0.169 4.169
26 C 0.086 3.914
27 N -0.519 5.519
28 C 0.086 3.914
29 C -0.167 4.167
30 H 0.063 0.937
31 H 0.069 0.931
32 H 0.065 0.935
33 H 0.077 0.923
34 H 0.071 0.929
35 H 0.420 0.580
36 H 0.079 0.921
37 H 0.104 0.896
38 H 0.082 0.918
39 H 0.079 0.921
40 H 0.378 0.622
41 H 0.268 0.732
42 H 0.063 0.937
43 H 0.074 0.926
44 H 0.148 0.852
45 H 0.170 0.830
46 H 0.173 0.827
47 H 0.158 0.842
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.645 1.302 29.113 29.369
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.073 4.073
3 H 0.125 0.875
4 C 0.005 3.995
5 N -0.339 5.339
6 C 0.297 3.703
7 O -0.407 6.407
8 C 0.294 3.706
9 O -0.430 6.430
10 N -0.314 5.314
11 C -0.010 4.010
12 C -0.170 4.170
13 C 0.176 3.824
14 O -0.380 6.380
15 C -0.587 4.587
16 H 0.061 0.939
17 C -0.162 4.162
18 N -0.571 5.571
19 Si 0.759 3.241
20 H -0.196 1.196
21 H -0.236 1.236
22 H -0.136 1.136
23 C -0.022 4.022
24 C -0.046 4.046
25 C -0.188 4.188
26 C -0.070 4.070
27 N -0.229 5.229
28 C -0.070 4.070
29 C -0.186 4.186
30 H 0.082 0.918
31 H 0.088 0.912
32 H 0.084 0.916
33 H 0.096 0.904
34 H 0.089 0.911
35 H 0.258 0.742
36 H 0.097 0.903
37 H 0.122 0.878
38 H 0.101 0.899
39 H 0.097 0.903
40 H 0.227 0.773
41 H 0.077 0.923
42 H 0.081 0.919
43 H 0.092 0.908
44 H 0.166 0.834
45 H 0.187 0.813
46 H 0.191 0.809
47 H 0.175 0.825
Dipole moment (debyes) X Y Z Total
from point charges 4.191 0.055 29.991 30.283
hybrid contribution -0.574 0.831 -1.674 1.955
sum 3.617 0.886 28.317 28.561
Atomic orbital electron populations
1.21912 0.92464 1.03162 1.03020 1.20335 0.97424 1.00183 0.89323
0.87451 1.21602 1.00565 0.95483 0.81874 1.45655 1.55715 1.28327
1.04155 1.19742 0.80583 0.85159 0.84793 1.90725 1.39368 1.24173
1.86386 1.20096 0.80972 0.85602 0.83967 1.90718 1.41032 1.24946
1.86336 1.48451 1.52094 1.25723 1.05115 1.22674 0.95981 0.86131
0.96191 1.23165 1.02202 0.97168 0.94515 1.19821 0.81794 0.90795
0.89999 1.86462 1.31267 1.35924 1.84375 1.21378 1.08225 1.26741
1.02380 0.93949 1.25722 0.98800 0.97540 0.94126 1.70048 1.40261
1.39919 1.06916 0.86169 0.82375 0.79196 0.76381 1.19578 1.23593
1.13649 1.22709 1.00654 0.96816 0.81978 1.20178 0.94976 0.94088
0.95326 1.22245 1.01766 0.95456 0.99374 1.23103 0.92877 1.00840
0.90204 1.67683 1.13298 1.10319 1.31584 1.23170 0.97050 0.90123
0.96676 1.22351 0.98557 1.02611 0.95106 0.91814 0.91190 0.91556
0.90431 0.91075 0.74159 0.90254 0.87791 0.89943 0.90317 0.77276
0.92284 0.91857 0.90767 0.83401 0.81301 0.80946 0.82481
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.26 8.89 71.98 0.64 -0.62 16
2 C -0.05 -0.48 2.63 -11.54 -0.03 -0.51 16
3 H 0.11 0.70 7.95 -2.39 -0.02 0.68 16
4 C 0.13 1.76 4.82 86.38 0.42 2.18 16
5 N -0.68 -12.47 5.28 -464.40 -2.45 -14.92 16
6 C 0.52 13.74 7.86 87.27 0.69 14.42 16
7 O -0.53 -15.83 13.77 -3.22 -0.04 -15.88 16
8 C 0.51 16.53 7.91 87.27 0.69 17.22 16
9 O -0.55 -19.35 16.80 -3.23 -0.05 -19.41 16
10 N -0.58 -20.51 3.32 -812.91 -2.70 -23.21 16
11 C 0.11 3.78 6.07 86.93 0.53 4.31 16
12 C -0.13 -5.21 4.83 32.06 0.15 -5.06 16
13 C 0.22 9.28 0.67 -10.35 -0.01 9.27 16
14 O -0.57 -23.18 10.45 -148.98 -1.56 -24.73 16
15 C -0.55 -29.09 8.82 25.60 0.23 -28.86 16
16 H 0.04 2.50 7.82 -2.91 -0.02 2.48 16
17 C 0.04 2.14 5.47 84.65 0.46 2.61 16
18 N -0.93 -55.73 13.96 21.45 0.30 -55.44 16
19 Si 0.93 42.81 23.89 68.60 1.64 44.45 16
20 H -0.27 -11.79 7.09 99.48 0.70 -11.08 16
21 H -0.31 -14.45 7.11 99.48 0.71 -13.75 16
22 H -0.21 -9.29 5.50 99.48 0.55 -8.74 16
23 C 0.10 3.94 6.21 86.73 0.54 4.48 16
24 C -0.04 -0.40 4.80 -19.67 -0.09 -0.49 16
25 C -0.17 -1.95 8.90 22.36 0.20 -1.75 16
26 C 0.09 1.18 11.18 84.68 0.95 2.12 16
27 N -0.52 -8.77 10.36 -195.84 -2.03 -10.80 16
28 C 0.09 1.09 11.18 84.68 0.95 2.04 16
29 C -0.17 -1.69 9.76 22.36 0.22 -1.47 16
30 H 0.06 0.55 7.46 -2.39 -0.02 0.54 16
31 H 0.07 0.53 8.14 -2.38 -0.02 0.51 16
32 H 0.07 0.60 7.18 -2.39 -0.02 0.58 16
33 H 0.08 1.12 7.68 -2.39 -0.02 1.10 16
34 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16
35 H 0.42 6.56 7.12 -92.71 -0.66 5.90 16
36 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16
37 H 0.10 3.30 6.14 -2.39 -0.01 3.29 16
38 H 0.08 3.33 8.05 -2.38 -0.02 3.31 16
39 H 0.08 3.08 5.00 -2.39 -0.01 3.06 16
40 H 0.38 13.17 9.08 -74.06 -0.67 12.50 16
41 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16
42 H 0.06 2.68 7.66 -2.39 -0.02 2.66 16
43 H 0.07 2.73 8.06 -2.39 -0.02 2.71 16
44 H 0.15 1.25 7.35 -2.91 -0.02 1.23 16
45 H 0.17 1.60 8.06 -2.91 -0.02 1.58 16
46 H 0.17 1.34 8.06 -2.91 -0.02 1.31 16
47 H 0.16 0.82 8.01 -2.91 -0.02 0.79 16
Total: -1.00 -70.52 380.92 -0.85 -71.38
By element:
Atomic # 1 Polarization: 29.15 SS G_CDS: -0.47 Total: 28.67 kcal
Atomic # 6 Polarization: 13.36 SS G_CDS: 6.52 Total: 19.88 kcal
Atomic # 7 Polarization: -97.49 SS G_CDS: -6.88 Total: -104.37 kcal
Atomic # 8 Polarization: -58.36 SS G_CDS: -1.65 Total: -60.02 kcal
Atomic # 14 Polarization: 42.81 SS G_CDS: 1.64 Total: 44.45 kcal
Total: -70.52 -0.85 -71.38 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001336157799.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -22.904 kcal
(2) G-P(sol) polarization free energy of solvation -70.524 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.428 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.851 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.376 kcal
(6) G-S(sol) free energy of system = (1) + (5) -94.280 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.84 seconds