Wall clock time and date at job start Wed Apr 1 2020 06:01:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46502 * 109.47290 * 2 1 4 4 C 1.46494 * 120.00296 * 93.97232 * 3 2 1 5 5 C 1.50704 * 109.47174 * 90.00244 * 4 3 2 6 6 C 1.38652 * 120.79122 * 269.72569 * 5 4 3 7 7 C 1.38202 * 119.16184 * 179.75296 * 6 5 4 8 8 N 1.31869 * 120.76510 * 0.52747 * 7 6 5 9 9 C 1.31872 * 121.72156 * 359.74501 * 8 7 6 10 10 C 1.38203 * 120.76845 * 359.97302 * 9 8 7 11 11 C 1.34781 * 119.99803 * 273.98156 * 3 2 1 12 12 O 1.21342 * 119.99705 * 185.36386 * 11 3 2 13 13 C 1.49451 * 120.00074 * 5.35552 * 11 3 2 14 14 O 1.21351 * 119.99698 * 5.59132 * 13 11 3 15 15 N 1.34776 * 120.00147 * 185.58832 * 13 11 3 16 16 C 1.47027 * 125.64607 * 359.69208 * 15 13 11 17 17 C 1.54333 * 107.26562 * 178.85065 * 16 15 13 18 18 C 1.55162 * 103.01829 * 338.14645 * 17 16 15 19 19 O 1.42898 * 111.00045 * 277.23047 * 18 17 16 20 20 C 1.50697 * 111.03711 * 153.39708 * 18 17 16 21 21 H 1.08001 * 120.00348 * 6.32765 * 20 18 17 22 22 C 1.37881 * 119.99892 * 186.32848 * 20 18 17 23 23 N 1.31509 * 119.99924 * 359.97438 * 22 20 18 24 24 Si 1.86801 * 119.99789 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47323 * 89.99686 * 24 22 20 26 26 H 1.48499 * 109.46708 * 210.00021 * 24 22 20 27 27 H 1.48501 * 109.47258 * 329.99579 * 24 22 20 28 28 C 1.47420 * 125.64781 * 180.02562 * 15 13 11 29 29 H 1.08995 * 109.47786 * 300.00541 * 1 2 3 30 30 H 1.09002 * 109.46955 * 60.00346 * 1 2 3 31 31 H 1.09001 * 109.47275 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47347 * 240.00003 * 2 1 3 33 33 H 1.09002 * 109.46955 * 119.99654 * 2 1 3 34 34 H 1.09004 * 109.47326 * 330.00418 * 4 3 2 35 35 H 1.08997 * 109.47784 * 210.00598 * 4 3 2 36 36 H 1.07998 * 120.41791 * 359.97438 * 6 5 4 37 37 H 1.08004 * 119.61826 * 180.24615 * 7 6 5 38 38 H 1.08007 * 119.61613 * 179.97438 * 9 8 7 39 39 H 1.08004 * 120.41743 * 180.02562 * 10 9 8 40 40 H 1.09004 * 109.88164 * 298.39879 * 16 15 13 41 41 H 1.09004 * 109.88066 * 59.56280 * 16 15 13 42 42 H 1.08993 * 110.85272 * 219.67579 * 17 16 15 43 43 H 1.09000 * 110.51485 * 96.44908 * 17 16 15 44 44 H 0.96707 * 114.00549 * 173.65618 * 19 18 17 45 45 H 0.97004 * 119.99839 * 179.97438 * 23 22 20 46 46 H 1.08994 * 110.36831 * 322.93033 * 28 15 13 47 47 H 1.09005 * 110.36775 * 85.14852 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3454 2.0426 1.2656 5 6 3.7939 1.7969 1.6011 6 6 4.1706 0.6980 2.3581 7 6 5.5090 0.5024 2.6416 8 7 6.4211 1.3515 2.2099 9 6 6.0987 2.4099 1.4925 10 6 4.7809 2.6674 1.1649 11 6 2.1665 2.0436 -1.1644 12 8 2.6620 3.1512 -1.1735 13 6 1.7209 1.4137 -2.4444 14 8 1.1343 0.3516 -2.4259 15 7 1.9705 2.0253 -3.6191 16 6 2.6627 3.3118 -3.7853 17 6 2.7425 3.5967 -5.3000 18 6 2.5851 2.1873 -5.9295 19 8 3.8331 1.4913 -5.9456 20 6 2.0017 2.2762 -7.3162 21 1 1.8503 3.2409 -7.7775 22 6 1.6614 1.1259 -7.9960 23 7 1.8463 -0.0488 -7.4344 24 14 0.9389 1.2362 -9.7151 25 1 2.0356 1.2064 -10.7158 26 1 0.0285 0.0855 -9.9440 27 1 0.1782 2.5041 -9.8520 28 6 1.5885 1.5186 -4.9498 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8932 -0.5138 0.8900 34 1 1.7154 1.6405 2.0591 35 1 2.1710 3.1144 1.1713 36 1 3.4279 0.0017 2.7186 37 1 5.8111 -0.3533 3.2272 38 1 6.8734 3.0835 1.1569 39 1 4.5233 3.5358 0.5767 40 1 2.1014 4.1019 -3.2865 41 1 3.6679 3.2484 -3.3685 42 1 3.7070 4.0309 -5.5628 43 1 1.9269 4.2503 -5.6093 44 1 3.7673 0.5724 -6.2396 45 1 1.6065 -0.8581 -7.9126 46 1 1.6905 0.4341 -4.9863 47 1 0.5658 1.8110 -5.1879 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345958428.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:01:20 Heat of formation + Delta-G solvation = -62.859533 kcal Electronic energy + Delta-G solvation = -31513.286117 eV Core-core repulsion = 27275.880448 eV Total energy + Delta-G solvation = -4237.405668 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.87476 -40.09087 -38.56910 -37.34479 -36.30862 -34.24800 -33.35440 -32.28041 -31.37591 -30.46298 -30.22322 -28.04375 -27.54422 -25.66327 -24.09030 -23.65268 -23.03826 -22.48139 -21.08837 -19.71019 -18.82818 -17.27032 -17.17253 -17.01980 -16.73907 -16.23382 -15.85822 -15.70227 -15.57867 -15.19743 -14.80563 -14.43916 -14.28632 -13.86509 -13.84969 -13.66469 -13.30110 -13.10329 -12.93149 -12.76368 -12.68494 -12.45921 -12.32957 -11.95422 -11.69385 -11.59081 -11.57025 -11.11291 -11.00923 -10.89560 -10.67002 -10.60380 -10.49799 -10.24043 -9.98800 -9.74293 -9.40225 -9.31443 -9.00885 -8.91527 -8.72991 -8.43354 -7.91257 -6.32851 -4.42256 0.94253 0.99135 1.73512 2.55550 3.18203 3.25968 3.28320 3.51545 3.59748 3.77369 4.22759 4.29128 4.40013 4.40823 4.59920 4.87178 4.93922 4.95003 4.96224 5.08875 5.26027 5.39592 5.45104 5.46707 5.49650 5.62935 5.72382 5.76180 5.77966 5.80207 5.98200 6.02703 6.12180 6.23359 6.27649 6.42871 6.48317 6.52585 6.69606 6.77495 6.81871 7.04106 7.14923 7.27292 7.69119 7.73723 7.79420 7.97471 8.01389 8.41729 8.61949 9.24932 9.33490 10.74304 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016802 B = 0.002845 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.041101 B = 9839.187337 C =10501.487884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.104 3.896 3 N -0.587 5.587 4 C 0.154 3.846 5 C -0.064 4.064 6 C -0.160 4.160 7 C 0.093 3.907 8 N -0.485 5.485 9 C 0.096 3.904 10 C -0.146 4.146 11 C 0.512 3.488 12 O -0.515 6.515 13 C 0.506 3.494 14 O -0.527 6.527 15 N -0.573 5.573 16 C 0.112 3.888 17 C -0.121 4.121 18 C 0.249 3.751 19 O -0.581 6.581 20 C -0.537 4.537 21 H 0.068 0.932 22 C 0.071 3.929 23 N -0.893 5.893 24 Si 0.904 3.096 25 H -0.278 1.278 26 H -0.285 1.285 27 H -0.272 1.272 28 C 0.093 3.907 29 H 0.044 0.956 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.105 0.895 33 H 0.068 0.932 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.133 0.867 37 H 0.154 0.846 38 H 0.156 0.844 39 H 0.142 0.858 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.381 0.619 45 H 0.270 0.730 46 H 0.091 0.909 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.361 1.841 18.724 18.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.018 4.018 3 N -0.321 5.321 4 C 0.031 3.969 5 C -0.073 4.073 6 C -0.181 4.181 7 C -0.064 4.064 8 N -0.194 5.194 9 C -0.061 4.061 10 C -0.166 4.166 11 C 0.295 3.705 12 O -0.390 6.390 13 C 0.288 3.712 14 O -0.406 6.406 15 N -0.305 5.305 16 C -0.011 4.011 17 C -0.159 4.159 18 C 0.208 3.792 19 O -0.389 6.389 20 C -0.575 4.575 21 H 0.086 0.914 22 C -0.132 4.132 23 N -0.532 5.532 24 Si 0.731 3.269 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.197 1.197 28 C -0.027 4.027 29 H 0.064 0.936 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.123 0.877 33 H 0.087 0.913 34 H 0.111 0.889 35 H 0.115 0.885 36 H 0.151 0.849 37 H 0.172 0.828 38 H 0.173 0.827 39 H 0.160 0.840 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.095 0.905 43 H 0.096 0.904 44 H 0.230 0.770 45 H 0.080 0.920 46 H 0.109 0.891 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.358 2.087 19.156 19.318 hybrid contribution -1.557 -0.526 -1.255 2.068 sum -0.199 1.561 17.901 17.970 Atomic orbital electron populations 1.22103 0.95198 1.02417 1.02004 1.21940 0.95349 0.80666 1.03828 1.47860 1.64310 1.15236 1.04697 1.20416 0.90709 0.99985 0.85753 1.20665 0.96723 0.94487 0.95425 1.22051 0.97976 0.98064 0.99989 1.22731 0.89064 0.97574 0.97056 1.67667 1.38307 1.03458 1.09982 1.22813 0.95229 0.94197 0.93859 1.22263 0.93695 1.00953 0.99677 1.20532 0.79020 0.85707 0.85228 1.90689 1.41959 1.19751 1.86606 1.19479 0.82198 0.85521 0.83973 1.90681 1.42244 1.21516 1.86209 1.48680 1.53289 1.22224 1.06327 1.22137 0.96897 0.84327 0.97746 1.22710 1.02278 0.98779 0.92170 1.19637 0.81186 0.86505 0.91860 1.86135 1.32692 1.29940 1.90179 1.21461 1.42632 0.93542 0.99856 0.91401 1.25083 0.94324 0.95205 0.98613 1.69705 1.47650 0.97713 1.38134 0.86391 0.78997 0.77873 0.83591 1.20359 1.21016 1.19677 1.23478 0.99842 1.01607 0.77806 0.93648 0.91100 0.91633 0.87673 0.91345 0.88875 0.88468 0.84908 0.82837 0.82663 0.83977 0.91598 0.91484 0.90548 0.90375 0.76958 0.91972 0.89108 0.91484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.81 9.67 37.15 0.36 -1.45 16 2 C 0.10 1.23 5.68 -4.04 -0.02 1.20 16 3 N -0.59 -7.50 2.46 -175.57 -0.43 -7.94 16 4 C 0.15 1.52 5.52 -5.19 -0.03 1.50 16 5 C -0.06 -0.67 5.50 -104.32 -0.57 -1.24 16 6 C -0.16 -1.48 9.82 -39.44 -0.39 -1.86 16 7 C 0.09 0.93 11.18 -17.55 -0.20 0.73 16 8 N -0.48 -5.88 10.36 -13.25 -0.14 -6.02 16 9 C 0.10 1.08 11.18 -17.55 -0.20 0.89 16 10 C -0.15 -1.66 9.72 -39.44 -0.38 -2.05 16 11 C 0.51 8.32 7.66 -11.58 -0.09 8.23 16 12 O -0.52 -8.71 13.13 5.50 0.07 -8.64 16 13 C 0.51 9.69 7.68 -11.59 -0.09 9.60 16 14 O -0.53 -10.54 11.67 5.50 0.06 -10.47 16 15 N -0.57 -11.75 3.33 -171.01 -0.57 -12.32 16 16 C 0.11 2.10 5.49 -3.06 -0.02 2.08 16 17 C -0.12 -2.43 6.13 -24.89 -0.15 -2.58 16 18 C 0.25 5.89 0.87 -89.61 -0.08 5.81 16 19 O -0.58 -14.57 13.16 -35.23 -0.46 -15.03 16 20 C -0.54 -13.64 8.27 -34.44 -0.28 -13.92 16 21 H 0.07 1.70 7.79 -52.49 -0.41 1.29 16 22 C 0.07 1.81 5.29 -17.82 -0.09 1.71 16 23 N -0.89 -23.13 10.69 55.43 0.59 -22.54 16 24 Si 0.90 19.95 29.54 -169.99 -5.02 14.92 16 25 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 26 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 27 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 28 C 0.09 2.16 5.38 -2.52 -0.01 2.14 16 29 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 1.02 6.46 -51.93 -0.34 0.68 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.11 1.54 5.84 -51.93 -0.30 1.24 16 33 H 0.07 0.61 8.04 -51.93 -0.42 0.19 16 34 H 0.09 0.67 8.03 -51.93 -0.42 0.25 16 35 H 0.10 0.99 7.46 -51.93 -0.39 0.61 16 36 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 37 H 0.15 1.11 8.06 -52.48 -0.42 0.69 16 38 H 0.16 1.42 8.06 -52.48 -0.42 1.00 16 39 H 0.14 1.65 7.49 -52.48 -0.39 1.26 16 40 H 0.07 1.14 7.59 -51.93 -0.39 0.75 16 41 H 0.07 1.28 7.70 -51.93 -0.40 0.88 16 42 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 43 H 0.08 1.46 8.03 -51.93 -0.42 1.05 16 44 H 0.38 9.73 7.56 45.56 0.34 10.08 16 45 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 46 H 0.09 2.32 7.33 -51.93 -0.38 1.94 16 47 H 0.07 1.59 8.03 -51.93 -0.42 1.17 16 LS Contribution 384.97 15.07 5.80 5.80 Total: -1.00 -29.03 384.97 -8.34 -37.37 By element: Atomic # 1 Polarization: 20.07 SS G_CDS: -6.00 Total: 14.07 kcal Atomic # 6 Polarization: 13.04 SS G_CDS: -2.25 Total: 10.79 kcal Atomic # 7 Polarization: -48.27 SS G_CDS: -0.55 Total: -48.81 kcal Atomic # 8 Polarization: -33.82 SS G_CDS: -0.33 Total: -34.15 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.92 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -29.03 -8.34 -37.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345958428.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.488 kcal (2) G-P(sol) polarization free energy of solvation -29.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds