Wall clock time and date at job start Wed Apr 1 2020 06:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46502 * 109.47290 * 2 1 4 4 C 1.46494 * 120.00296 * 93.97232 * 3 2 1 5 5 C 1.50704 * 109.47174 * 90.00244 * 4 3 2 6 6 C 1.38652 * 120.79122 * 269.72569 * 5 4 3 7 7 C 1.38202 * 119.16184 * 179.75296 * 6 5 4 8 8 N 1.31869 * 120.76510 * 0.52747 * 7 6 5 9 9 C 1.31872 * 121.72156 * 359.74501 * 8 7 6 10 10 C 1.38203 * 120.76845 * 359.97302 * 9 8 7 11 11 C 1.34781 * 119.99803 * 273.98156 * 3 2 1 12 12 O 1.21342 * 119.99705 * 185.36386 * 11 3 2 13 13 C 1.49451 * 120.00074 * 5.35552 * 11 3 2 14 14 O 1.21351 * 119.99698 * 5.59132 * 13 11 3 15 15 N 1.34776 * 120.00147 * 185.58832 * 13 11 3 16 16 C 1.47027 * 125.64607 * 359.69208 * 15 13 11 17 17 C 1.54333 * 107.26562 * 178.85065 * 16 15 13 18 18 C 1.55162 * 103.01829 * 338.14645 * 17 16 15 19 19 O 1.42898 * 111.00045 * 277.23047 * 18 17 16 20 20 C 1.50697 * 111.03711 * 153.39708 * 18 17 16 21 21 H 1.08001 * 120.00348 * 6.32765 * 20 18 17 22 22 C 1.37881 * 119.99892 * 186.32848 * 20 18 17 23 23 N 1.31509 * 119.99924 * 359.97438 * 22 20 18 24 24 Si 1.86801 * 119.99789 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47323 * 89.99686 * 24 22 20 26 26 H 1.48499 * 109.46708 * 210.00021 * 24 22 20 27 27 H 1.48501 * 109.47258 * 329.99579 * 24 22 20 28 28 C 1.47420 * 125.64781 * 180.02562 * 15 13 11 29 29 H 1.08995 * 109.47786 * 300.00541 * 1 2 3 30 30 H 1.09002 * 109.46955 * 60.00346 * 1 2 3 31 31 H 1.09001 * 109.47275 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47347 * 240.00003 * 2 1 3 33 33 H 1.09002 * 109.46955 * 119.99654 * 2 1 3 34 34 H 1.09004 * 109.47326 * 330.00418 * 4 3 2 35 35 H 1.08997 * 109.47784 * 210.00598 * 4 3 2 36 36 H 1.07998 * 120.41791 * 359.97438 * 6 5 4 37 37 H 1.08004 * 119.61826 * 180.24615 * 7 6 5 38 38 H 1.08007 * 119.61613 * 179.97438 * 9 8 7 39 39 H 1.08004 * 120.41743 * 180.02562 * 10 9 8 40 40 H 1.09004 * 109.88164 * 298.39879 * 16 15 13 41 41 H 1.09004 * 109.88066 * 59.56280 * 16 15 13 42 42 H 1.08993 * 110.85272 * 219.67579 * 17 16 15 43 43 H 1.09000 * 110.51485 * 96.44908 * 17 16 15 44 44 H 0.96707 * 114.00549 * 173.65618 * 19 18 17 45 45 H 0.97004 * 119.99839 * 179.97438 * 23 22 20 46 46 H 1.08994 * 110.36831 * 322.93033 * 28 15 13 47 47 H 1.09005 * 110.36775 * 85.14852 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3454 2.0426 1.2656 5 6 3.7939 1.7969 1.6011 6 6 4.1706 0.6980 2.3581 7 6 5.5090 0.5024 2.6416 8 7 6.4211 1.3515 2.2099 9 6 6.0987 2.4099 1.4925 10 6 4.7809 2.6674 1.1649 11 6 2.1665 2.0436 -1.1644 12 8 2.6620 3.1512 -1.1735 13 6 1.7209 1.4137 -2.4444 14 8 1.1343 0.3516 -2.4259 15 7 1.9705 2.0253 -3.6191 16 6 2.6627 3.3118 -3.7853 17 6 2.7425 3.5967 -5.3000 18 6 2.5851 2.1873 -5.9295 19 8 3.8331 1.4913 -5.9456 20 6 2.0017 2.2762 -7.3162 21 1 1.8503 3.2409 -7.7775 22 6 1.6614 1.1259 -7.9960 23 7 1.8463 -0.0488 -7.4344 24 14 0.9389 1.2362 -9.7151 25 1 2.0356 1.2064 -10.7158 26 1 0.0285 0.0855 -9.9440 27 1 0.1782 2.5041 -9.8520 28 6 1.5885 1.5186 -4.9498 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8932 -0.5138 0.8900 34 1 1.7154 1.6405 2.0591 35 1 2.1710 3.1144 1.1713 36 1 3.4279 0.0017 2.7186 37 1 5.8111 -0.3533 3.2272 38 1 6.8734 3.0835 1.1569 39 1 4.5233 3.5358 0.5767 40 1 2.1014 4.1019 -3.2865 41 1 3.6679 3.2484 -3.3685 42 1 3.7070 4.0309 -5.5628 43 1 1.9269 4.2503 -5.6093 44 1 3.7673 0.5724 -6.2396 45 1 1.6065 -0.8581 -7.9126 46 1 1.6905 0.4341 -4.9863 47 1 0.5658 1.8110 -5.1879 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345958428.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:01:19 Heat of formation + Delta-G solvation = -82.174789 kcal Electronic energy + Delta-G solvation = -31514.123689 eV Core-core repulsion = 27275.880448 eV Total energy + Delta-G solvation = -4238.243241 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.08789 -41.05986 -40.02313 -38.89954 -37.50426 -35.96432 -34.25515 -34.22657 -32.13598 -31.94891 -31.36364 -29.72898 -28.68195 -27.32612 -25.40717 -24.58203 -24.08612 -23.63320 -22.29162 -21.50824 -20.13928 -19.12406 -18.43969 -18.24915 -17.66569 -17.20989 -17.13656 -17.02220 -16.95692 -16.52478 -16.28179 -16.02285 -15.49851 -15.02569 -14.74970 -14.69974 -14.66378 -14.63187 -14.52212 -14.00611 -13.89161 -13.52889 -13.51394 -13.32498 -13.27490 -12.98308 -12.85403 -12.61295 -12.37960 -12.32870 -12.27196 -12.15344 -12.08460 -11.86637 -11.21142 -10.87805 -10.68655 -10.57774 -10.41056 -10.25889 -10.07875 -9.94985 -9.55476 -8.26028 -6.42647 0.13578 0.21087 0.36545 1.31866 1.43283 1.45402 1.54326 2.11286 2.33190 2.41536 2.90590 2.99985 3.14112 3.56316 3.64032 3.75331 3.77493 4.04765 4.05841 4.14852 4.16483 4.21452 4.30783 4.33439 4.39614 4.59616 4.60229 4.64914 4.72438 4.74543 4.80629 4.90218 4.96193 5.00556 5.03952 5.05965 5.15525 5.30601 5.32895 5.37189 5.42466 5.47038 5.73548 5.77588 5.91012 6.04615 6.33316 6.57541 6.66812 6.94140 7.01571 7.25661 7.33957 8.79503 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016802 B = 0.002845 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.041101 B = 9839.187337 C =10501.487884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.102 3.898 3 N -0.574 5.574 4 C 0.154 3.846 5 C -0.073 4.073 6 C -0.151 4.151 7 C 0.083 3.917 8 N -0.511 5.511 9 C 0.080 3.920 10 C -0.159 4.159 11 C 0.513 3.487 12 O -0.525 6.525 13 C 0.496 3.504 14 O -0.540 6.540 15 N -0.585 5.585 16 C 0.122 3.878 17 C -0.116 4.116 18 C 0.233 3.767 19 O -0.588 6.588 20 C -0.556 4.556 21 H 0.068 0.932 22 C 0.029 3.971 23 N -0.913 5.913 24 Si 0.964 3.036 25 H -0.277 1.277 26 H -0.284 1.284 27 H -0.266 1.266 28 C 0.111 3.889 29 H 0.071 0.929 30 H 0.034 0.966 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.110 0.890 34 H 0.134 0.866 35 H 0.094 0.906 36 H 0.168 0.832 37 H 0.181 0.819 38 H 0.165 0.835 39 H 0.134 0.866 40 H 0.084 0.916 41 H 0.064 0.936 42 H 0.083 0.917 43 H 0.091 0.909 44 H 0.374 0.626 45 H 0.270 0.730 46 H 0.058 0.942 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.320 1.837 20.785 20.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.019 4.019 3 N -0.306 5.306 4 C 0.033 3.967 5 C -0.083 4.083 6 C -0.171 4.171 7 C -0.074 4.074 8 N -0.221 5.221 9 C -0.076 4.076 10 C -0.180 4.180 11 C 0.295 3.705 12 O -0.402 6.402 13 C 0.280 3.720 14 O -0.419 6.419 15 N -0.318 5.318 16 C 0.000 4.000 17 C -0.153 4.153 18 C 0.193 3.807 19 O -0.396 6.396 20 C -0.594 4.594 21 H 0.087 0.913 22 C -0.172 4.172 23 N -0.552 5.552 24 Si 0.789 3.211 25 H -0.202 1.202 26 H -0.210 1.210 27 H -0.190 1.190 28 C -0.011 4.011 29 H 0.090 0.910 30 H 0.053 0.947 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.128 0.872 34 H 0.152 0.848 35 H 0.112 0.888 36 H 0.186 0.814 37 H 0.198 0.802 38 H 0.182 0.818 39 H 0.152 0.848 40 H 0.103 0.897 41 H 0.083 0.917 42 H 0.102 0.898 43 H 0.109 0.891 44 H 0.222 0.778 45 H 0.079 0.921 46 H 0.077 0.923 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.679 2.091 21.263 21.376 hybrid contribution -1.338 -0.610 -1.799 2.324 sum -0.659 1.481 19.463 19.531 Atomic orbital electron populations 1.22032 0.94712 1.02934 1.01437 1.22004 0.95688 0.79979 1.04249 1.47912 1.62746 1.15423 1.04550 1.20691 0.91111 0.99982 0.84908 1.20801 0.96667 0.94920 0.95862 1.22389 0.98389 0.97697 0.98633 1.23277 0.89411 0.97838 0.96837 1.67683 1.39546 1.04131 1.10732 1.23015 0.95694 0.94600 0.94244 1.22303 0.94216 1.01301 1.00169 1.19953 0.79649 0.85731 0.85148 1.90685 1.42808 1.20052 1.86645 1.20203 0.81598 0.85373 0.84806 1.90678 1.42410 1.22084 1.86729 1.48702 1.54178 1.22960 1.05947 1.22100 0.96904 0.84071 0.96947 1.22715 1.03218 0.96787 0.92625 1.19859 0.80732 0.88319 0.91795 1.86128 1.33721 1.29554 1.90160 1.21749 1.42999 0.93712 1.00913 0.91337 1.25791 0.94638 0.94942 1.01850 1.69815 1.48108 0.98101 1.39195 0.85463 0.78211 0.77898 0.79511 1.20235 1.20970 1.19024 1.22977 0.99024 0.99476 0.79660 0.90998 0.94726 0.90653 0.90949 0.87192 0.84833 0.88773 0.81409 0.80248 0.81752 0.84840 0.89741 0.91749 0.89845 0.89053 0.77753 0.92054 0.92324 0.92822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.14 9.67 71.98 0.70 -2.45 16 2 C 0.10 2.16 5.68 86.38 0.49 2.65 16 3 N -0.57 -13.40 2.46 -827.75 -2.04 -15.44 16 4 C 0.15 2.54 5.52 85.64 0.47 3.02 16 5 C -0.07 -1.35 5.50 -19.67 -0.11 -1.46 16 6 C -0.15 -2.22 9.82 22.36 0.22 -2.00 16 7 C 0.08 1.45 11.18 84.68 0.95 2.39 16 8 N -0.51 -11.79 10.36 -195.84 -2.03 -13.82 16 9 C 0.08 1.79 11.18 84.68 0.95 2.73 16 10 C -0.16 -3.51 9.72 22.36 0.22 -3.29 16 11 C 0.51 16.30 7.66 87.27 0.67 16.97 16 12 O -0.53 -17.36 13.13 -3.22 -0.04 -17.41 16 13 C 0.50 19.29 7.68 87.27 0.67 19.96 16 14 O -0.54 -22.13 11.67 -3.25 -0.04 -22.17 16 15 N -0.59 -24.44 3.33 -813.30 -2.70 -27.15 16 16 C 0.12 4.56 5.49 86.73 0.48 5.04 16 17 C -0.12 -4.60 6.13 31.79 0.19 -4.41 16 18 C 0.23 11.27 0.87 -10.14 -0.01 11.26 16 19 O -0.59 -30.29 13.16 -148.98 -1.96 -32.25 16 20 C -0.56 -28.57 8.27 25.60 0.21 -28.36 16 21 H 0.07 3.43 7.79 -2.91 -0.02 3.40 16 22 C 0.03 1.49 5.29 84.66 0.45 1.94 16 23 N -0.91 -48.49 10.69 21.45 0.23 -48.26 16 24 Si 0.96 41.09 29.54 68.60 2.03 43.12 16 25 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 26 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 27 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 28 C 0.11 5.30 5.38 86.86 0.47 5.77 16 29 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.03 0.97 6.46 -2.39 -0.02 0.95 16 31 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.07 2.07 5.84 -2.39 -0.01 2.05 16 33 H 0.11 1.45 8.04 -2.39 -0.02 1.43 16 34 H 0.13 1.18 8.03 -2.39 -0.02 1.16 16 35 H 0.09 1.68 7.46 -2.39 -0.02 1.67 16 36 H 0.17 1.23 8.06 -2.91 -0.02 1.21 16 37 H 0.18 2.01 8.06 -2.91 -0.02 1.98 16 38 H 0.17 3.06 8.06 -2.91 -0.02 3.03 16 39 H 0.13 3.10 7.49 -2.91 -0.02 3.07 16 40 H 0.08 2.84 7.59 -2.38 -0.02 2.83 16 41 H 0.06 2.44 7.70 -2.38 -0.02 2.42 16 42 H 0.08 3.17 8.14 -2.39 -0.02 3.15 16 43 H 0.09 3.36 8.03 -2.39 -0.02 3.34 16 44 H 0.37 19.91 7.56 -74.05 -0.56 19.35 16 45 H 0.27 13.76 8.31 -92.70 -0.77 12.99 16 46 H 0.06 3.15 7.33 -2.39 -0.02 3.13 16 47 H 0.05 2.65 8.03 -2.38 -0.02 2.63 16 Total: -1.00 -64.83 384.97 0.89 -63.94 By element: Atomic # 1 Polarization: 39.26 SS G_CDS: 0.44 Total: 39.70 kcal Atomic # 6 Polarization: 22.74 SS G_CDS: 7.01 Total: 29.75 kcal Atomic # 7 Polarization: -98.12 SS G_CDS: -6.54 Total: -104.67 kcal Atomic # 8 Polarization: -69.79 SS G_CDS: -2.04 Total: -71.83 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 2.03 Total: 43.12 kcal Total: -64.83 0.89 -63.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345958428.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.238 kcal (2) G-P(sol) polarization free energy of solvation -64.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds