Wall clock time and date at job start Wed Apr 1 2020 04:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.46570 * 2 1 4 4 C 1.50697 * 109.47221 * 240.00105 * 2 1 3 5 5 H 1.07998 * 120.00032 * 239.99735 * 4 2 1 6 6 C 1.37875 * 119.99879 * 60.00218 * 4 2 1 7 7 N 1.31514 * 120.00405 * 359.97438 * 6 4 2 8 8 Si 1.86810 * 119.99855 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.46964 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.46963 * 119.99706 * 8 6 4 11 11 H 1.48496 * 109.46940 * 239.99594 * 8 6 4 12 12 N 1.46502 * 109.46925 * 119.99857 * 2 1 3 13 13 C 1.46496 * 119.99650 * 60.00495 * 12 2 1 14 14 C 1.34774 * 119.99950 * 240.00044 * 12 2 1 15 15 O 1.21281 * 119.99920 * 4.25550 * 14 12 2 16 16 C 1.50696 * 120.00072 * 184.25486 * 14 12 2 17 17 H 1.09006 * 109.60001 * 28.83027 * 16 14 12 18 18 O 1.43237 * 109.60813 * 149.15810 * 16 14 12 19 19 C 1.42967 * 112.99123 * 188.11905 * 18 16 14 20 20 C 1.50344 * 109.75388 * 310.43845 * 19 18 16 21 21 O 1.21277 * 118.83272 * 195.86269 * 20 19 18 22 22 N 1.33738 * 122.43200 * 15.85340 * 20 19 18 23 23 C 1.46498 * 118.76475 * 178.11425 * 22 20 19 24 24 C 1.46091 * 122.50459 * 358.16023 * 22 20 19 25 25 H 1.09002 * 109.31719 * 258.24194 * 24 22 20 26 26 C 1.50704 * 109.39275 * 138.47324 * 24 22 20 27 27 C 1.38679 * 120.41347 * 133.54772 * 26 24 22 28 28 C 1.38625 * 118.41410 * 179.78143 * 27 26 24 29 29 C 1.38228 * 119.16349 * 0.46902 * 28 27 26 30 30 N 1.31851 * 120.76394 * 359.77304 * 29 28 27 31 31 C 1.31886 * 121.72746 * 359.97438 * 30 29 28 32 32 H 1.08994 * 109.47607 * 299.99533 * 1 2 3 33 33 H 1.09002 * 109.47213 * 60.00041 * 1 2 3 34 34 H 1.09001 * 109.47096 * 179.97438 * 1 2 3 35 35 H 0.97000 * 120.00250 * 179.97438 * 7 6 4 36 36 H 1.09002 * 109.47364 * 273.99857 * 13 12 2 37 37 H 1.08999 * 109.47318 * 33.99997 * 13 12 2 38 38 H 1.09004 * 109.47302 * 153.99970 * 13 12 2 39 39 H 1.08997 * 109.41380 * 70.50940 * 19 18 16 40 40 H 1.08997 * 109.41571 * 190.36765 * 19 18 16 41 41 H 1.09005 * 109.47322 * 270.04513 * 23 22 20 42 42 H 1.09001 * 109.47261 * 30.04526 * 23 22 20 43 43 H 1.08998 * 109.47278 * 150.04261 * 23 22 20 44 44 H 1.07992 * 120.78867 * 0.02562 * 27 26 24 45 45 H 1.08003 * 120.41671 * 180.26119 * 28 27 26 46 46 H 1.08003 * 119.61492 * 179.74383 * 29 28 27 47 47 H 1.07996 * 119.61869 * 179.97438 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5884 -1.1314 6 6 1.6994 -0.2392 -2.4827 7 7 0.9429 0.8298 -2.6034 8 14 2.3227 -1.1194 -4.0080 9 1 3.1475 -2.2862 -3.6038 10 1 1.1680 -1.5865 -4.8165 11 1 3.1474 -0.1856 -4.8160 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4279 14 6 2.7932 -0.0356 2.0834 15 8 3.0227 1.1456 1.9320 16 6 3.3743 -0.7709 3.2634 17 1 3.5197 -1.8199 3.0051 18 8 4.6313 -0.1858 3.6228 19 6 5.3347 -0.9387 4.6139 20 6 4.4155 -1.2513 5.7618 21 8 4.8961 -1.6217 6.8118 22 7 3.0864 -1.1359 5.6683 23 6 2.2639 -1.5018 6.8240 24 6 2.4231 -0.6597 4.4569 25 1 2.1312 0.3819 4.5913 26 6 1.1952 -1.4941 4.1977 27 6 -0.0106 -0.8884 3.8776 28 6 -1.1126 -1.6959 3.6430 29 6 -0.9764 -3.0677 3.7447 30 7 0.1848 -3.6089 4.0562 31 6 1.2553 -2.8721 4.2812 32 1 -0.3634 0.5137 0.8899 33 1 -0.3634 0.5138 -0.8900 34 1 -0.3633 -1.0277 -0.0005 35 1 0.7089 1.1614 -3.4844 36 1 0.7020 -2.1458 1.9369 37 1 1.5992 -2.6140 0.4727 38 1 2.4288 -2.5633 2.0467 39 1 5.6948 -1.8688 4.1744 40 1 6.1824 -0.3573 4.9766 41 1 2.0012 -2.5580 6.7633 42 1 2.8240 -1.3188 7.7411 43 1 1.3545 -0.9009 6.8277 44 1 -0.0881 0.1865 3.8089 45 1 -2.0664 -1.2586 3.3872 46 1 -1.8313 -3.7035 3.5675 47 1 2.1895 -3.3512 4.5344 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361568556.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:01 Heat of formation + Delta-G solvation = -40.542836 kcal Electronic energy + Delta-G solvation = -33082.982906 eV Core-core repulsion = 28846.544962 eV Total energy + Delta-G solvation = -4236.437944 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.67640 -40.09886 -39.23230 -37.55561 -36.15218 -35.44079 -33.29800 -32.72787 -31.89281 -30.17238 -29.10498 -28.95692 -26.32043 -25.70956 -25.38298 -25.13436 -23.80096 -22.38806 -21.36907 -19.46519 -18.76677 -18.16106 -17.50550 -17.26218 -16.67740 -16.55444 -16.33365 -16.05058 -15.35636 -15.16870 -15.05880 -14.85324 -14.56315 -14.27151 -14.11195 -13.86214 -13.61736 -13.25137 -13.18777 -12.97982 -12.64067 -12.53292 -12.43487 -12.30967 -12.07620 -11.78764 -11.73529 -11.58638 -11.14084 -10.91772 -10.83361 -10.67478 -10.34095 -10.25539 -9.96817 -9.77297 -9.62931 -9.29891 -9.24367 -9.12807 -8.99788 -8.51245 -7.76668 -6.15861 -4.24098 0.79752 1.10600 2.21923 2.44575 2.89527 3.17202 3.21428 3.30057 3.32893 3.62604 3.92690 4.04482 4.21266 4.33410 4.39386 4.47211 4.58236 4.74408 4.75801 4.81284 4.89141 4.96646 5.02641 5.16405 5.21611 5.26035 5.28521 5.39459 5.53586 5.56720 5.59271 5.82100 5.86261 5.94615 6.08508 6.22762 6.43118 6.49489 6.63686 6.70607 6.93610 6.99899 7.24523 7.38653 7.61162 7.73921 7.75749 7.89912 8.07079 8.32645 8.67898 8.85154 9.42705 10.89459 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012783 B = 0.004211 C = 0.003554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2189.959186 B = 6647.091299 C = 7875.713306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.261 3.739 3 H 0.065 0.935 4 C -0.528 4.528 5 H 0.060 0.940 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.898 3.102 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.282 1.282 12 N -0.577 5.577 13 C 0.076 3.924 14 C 0.517 3.483 15 O -0.523 6.523 16 C 0.060 3.940 17 H 0.092 0.908 18 O -0.337 6.337 19 C 0.044 3.956 20 C 0.489 3.511 21 O -0.540 6.540 22 N -0.599 5.599 23 C 0.081 3.919 24 C 0.175 3.825 25 H 0.102 0.898 26 C -0.159 4.159 27 C -0.044 4.044 28 C -0.163 4.163 29 C 0.106 3.894 30 N -0.480 5.480 31 C 0.120 3.880 32 H 0.010 0.990 33 H 0.094 0.906 34 H 0.029 0.971 35 H 0.264 0.736 36 H 0.049 0.951 37 H 0.081 0.919 38 H 0.050 0.950 39 H 0.095 0.905 40 H 0.138 0.862 41 H 0.059 0.941 42 H 0.082 0.918 43 H 0.070 0.930 44 H 0.137 0.863 45 H 0.139 0.861 46 H 0.158 0.842 47 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.620 -6.752 15.145 16.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.161 3.839 3 H 0.083 0.917 4 C -0.567 4.567 5 H 0.078 0.922 6 C -0.136 4.136 7 N -0.524 5.524 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.208 1.208 12 N -0.309 5.309 13 C -0.067 4.067 14 C 0.300 3.700 15 O -0.400 6.400 16 C -0.002 4.002 17 H 0.109 0.891 18 O -0.254 6.254 19 C -0.035 4.035 20 C 0.278 3.722 21 O -0.418 6.418 22 N -0.333 5.333 23 C -0.061 4.061 24 C 0.070 3.930 25 H 0.120 0.880 26 C -0.162 4.162 27 C -0.070 4.070 28 C -0.183 4.183 29 C -0.050 4.050 30 N -0.188 5.188 31 C -0.037 4.037 32 H 0.029 0.971 33 H 0.112 0.888 34 H 0.048 0.952 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.100 0.900 38 H 0.069 0.931 39 H 0.112 0.888 40 H 0.155 0.845 41 H 0.077 0.923 42 H 0.101 0.899 43 H 0.089 0.911 44 H 0.155 0.845 45 H 0.157 0.843 46 H 0.175 0.825 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -2.202 -6.923 15.417 17.043 hybrid contribution 0.051 0.130 -0.940 0.950 sum -2.151 -6.793 14.477 16.136 Atomic orbital electron populations 1.22054 0.97920 0.99344 1.00793 1.19011 0.91037 0.94460 0.79361 0.91728 1.21315 1.32041 1.13150 0.90168 0.92153 1.24868 0.94830 0.94927 0.98958 1.69876 1.36201 1.22515 1.23794 0.86437 0.78642 0.79619 0.82699 1.19787 1.20907 1.20828 1.48164 1.48349 1.11487 1.22903 1.21949 0.98835 0.83373 1.02583 1.19361 0.80381 0.87354 0.82866 1.90703 1.59392 1.15037 1.74823 1.22592 0.85064 0.99050 0.93497 0.89088 1.88377 1.30670 1.48711 1.57600 1.22970 0.94792 0.99476 0.86276 1.21081 0.82924 0.77570 0.90671 1.90734 1.74666 1.47100 1.29282 1.47490 1.06159 1.65454 1.14163 1.21713 0.95092 1.00499 0.88766 1.20345 0.90094 0.98518 0.84061 0.87990 1.20728 0.95262 0.95733 1.04449 1.21465 0.91312 1.01067 0.93190 1.22150 1.00000 0.95060 1.01078 1.22845 0.95302 0.93006 0.93842 1.67762 0.99264 1.40247 1.11550 1.22453 0.97146 0.89634 0.94510 0.97063 0.88754 0.95226 0.92643 0.93307 0.90025 0.93137 0.88756 0.84463 0.92284 0.89924 0.91110 0.84511 0.84292 0.82518 0.83412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 8.97 37.16 0.33 -2.80 16 2 C 0.26 6.22 2.63 -69.08 -0.18 6.04 16 3 H 0.06 1.81 6.91 -51.93 -0.36 1.45 16 4 C -0.53 -13.60 8.02 -34.44 -0.28 -13.88 16 5 H 0.06 1.54 7.27 -52.49 -0.38 1.16 16 6 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -24.05 11.32 55.43 0.63 -23.43 16 8 Si 0.90 20.41 29.54 -169.99 -5.02 15.39 16 9 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 12 N -0.58 -11.29 2.75 -175.26 -0.48 -11.77 16 13 C 0.08 1.23 7.40 59.84 0.44 1.67 16 14 C 0.52 10.02 6.57 -10.99 -0.07 9.95 16 15 O -0.52 -12.36 16.10 -11.98 -0.19 -12.55 16 16 C 0.06 0.88 2.13 -27.87 -0.06 0.82 16 17 H 0.09 1.20 5.57 -51.93 -0.29 0.91 16 18 O -0.34 -5.13 10.22 -52.77 -0.54 -5.67 16 19 C 0.04 0.51 6.99 35.83 0.25 0.76 16 20 C 0.49 6.22 7.59 -11.62 -0.09 6.13 16 21 O -0.54 -8.15 16.35 5.56 0.09 -8.06 16 22 N -0.60 -6.92 2.74 -176.01 -0.48 -7.40 16 23 C 0.08 0.79 9.03 59.85 0.54 1.33 16 24 C 0.17 2.15 2.59 -69.29 -0.18 1.97 16 25 H 0.10 1.34 7.94 -51.93 -0.41 0.92 16 26 C -0.16 -1.77 1.81 -104.48 -0.19 -1.96 16 27 C -0.04 -0.48 8.83 -39.28 -0.35 -0.83 16 28 C -0.16 -1.58 9.42 -39.44 -0.37 -1.95 16 29 C 0.11 1.04 10.57 -17.55 -0.19 0.86 16 30 N -0.48 -5.44 10.27 -13.25 -0.14 -5.57 16 31 C 0.12 1.31 6.72 -17.55 -0.12 1.20 16 32 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.09 2.33 6.07 -51.93 -0.32 2.01 16 34 H 0.03 0.60 7.67 -51.93 -0.40 0.21 16 35 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 36 H 0.05 0.72 4.04 -51.93 -0.21 0.51 16 37 H 0.08 1.44 6.97 -51.93 -0.36 1.07 16 38 H 0.05 0.70 4.55 -51.93 -0.24 0.46 16 39 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.14 1.34 8.14 -51.93 -0.42 0.91 16 41 H 0.06 0.55 7.29 -51.93 -0.38 0.17 16 42 H 0.08 0.85 7.23 -51.93 -0.38 0.48 16 43 H 0.07 0.60 7.83 -51.93 -0.41 0.19 16 44 H 0.14 1.48 8.04 -52.49 -0.42 1.06 16 45 H 0.14 1.08 8.06 -52.48 -0.42 0.66 16 46 H 0.16 1.15 8.06 -52.48 -0.42 0.72 16 47 H 0.15 1.52 7.90 -52.49 -0.41 1.11 16 LS Contribution 369.31 15.07 5.57 5.57 Total: -1.00 -32.17 369.31 -7.38 -39.55 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -6.21 Total: 2.97 kcal Atomic # 6 Polarization: 11.57 SS G_CDS: -0.60 Total: 10.97 kcal Atomic # 7 Polarization: -47.70 SS G_CDS: -0.47 Total: -48.17 kcal Atomic # 8 Polarization: -25.63 SS G_CDS: -0.64 Total: -26.28 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.17 -7.38 -39.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361568556.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.997 kcal (2) G-P(sol) polarization free energy of solvation -32.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds