Wall clock time and date at job start Wed Apr 1 2020 04:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.46570 * 2 1 4 4 C 1.50697 * 109.47221 * 240.00105 * 2 1 3 5 5 H 1.07998 * 120.00032 * 239.99735 * 4 2 1 6 6 C 1.37875 * 119.99879 * 60.00218 * 4 2 1 7 7 N 1.31514 * 120.00405 * 359.97438 * 6 4 2 8 8 Si 1.86810 * 119.99855 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.46964 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.46963 * 119.99706 * 8 6 4 11 11 H 1.48496 * 109.46940 * 239.99594 * 8 6 4 12 12 N 1.46502 * 109.46925 * 119.99857 * 2 1 3 13 13 C 1.46496 * 119.99650 * 60.00495 * 12 2 1 14 14 C 1.34774 * 119.99950 * 240.00044 * 12 2 1 15 15 O 1.21281 * 119.99920 * 4.25550 * 14 12 2 16 16 C 1.50696 * 120.00072 * 184.25486 * 14 12 2 17 17 H 1.09006 * 109.60001 * 28.83027 * 16 14 12 18 18 O 1.43237 * 109.60813 * 149.15810 * 16 14 12 19 19 C 1.42967 * 112.99123 * 188.11905 * 18 16 14 20 20 C 1.50344 * 109.75388 * 310.43845 * 19 18 16 21 21 O 1.21277 * 118.83272 * 195.86269 * 20 19 18 22 22 N 1.33738 * 122.43200 * 15.85340 * 20 19 18 23 23 C 1.46498 * 118.76475 * 178.11425 * 22 20 19 24 24 C 1.46091 * 122.50459 * 358.16023 * 22 20 19 25 25 H 1.09002 * 109.31719 * 258.24194 * 24 22 20 26 26 C 1.50704 * 109.39275 * 138.47324 * 24 22 20 27 27 C 1.38679 * 120.41347 * 133.54772 * 26 24 22 28 28 C 1.38625 * 118.41410 * 179.78143 * 27 26 24 29 29 C 1.38228 * 119.16349 * 0.46902 * 28 27 26 30 30 N 1.31851 * 120.76394 * 359.77304 * 29 28 27 31 31 C 1.31886 * 121.72746 * 359.97438 * 30 29 28 32 32 H 1.08994 * 109.47607 * 299.99533 * 1 2 3 33 33 H 1.09002 * 109.47213 * 60.00041 * 1 2 3 34 34 H 1.09001 * 109.47096 * 179.97438 * 1 2 3 35 35 H 0.97000 * 120.00250 * 179.97438 * 7 6 4 36 36 H 1.09002 * 109.47364 * 273.99857 * 13 12 2 37 37 H 1.08999 * 109.47318 * 33.99997 * 13 12 2 38 38 H 1.09004 * 109.47302 * 153.99970 * 13 12 2 39 39 H 1.08997 * 109.41380 * 70.50940 * 19 18 16 40 40 H 1.08997 * 109.41571 * 190.36765 * 19 18 16 41 41 H 1.09005 * 109.47322 * 270.04513 * 23 22 20 42 42 H 1.09001 * 109.47261 * 30.04526 * 23 22 20 43 43 H 1.08998 * 109.47278 * 150.04261 * 23 22 20 44 44 H 1.07992 * 120.78867 * 0.02562 * 27 26 24 45 45 H 1.08003 * 120.41671 * 180.26119 * 28 27 26 46 46 H 1.08003 * 119.61492 * 179.74383 * 29 28 27 47 47 H 1.07996 * 119.61869 * 179.97438 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5884 -1.1314 6 6 1.6994 -0.2392 -2.4827 7 7 0.9429 0.8298 -2.6034 8 14 2.3227 -1.1194 -4.0080 9 1 3.1475 -2.2862 -3.6038 10 1 1.1680 -1.5865 -4.8165 11 1 3.1474 -0.1856 -4.8160 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4279 14 6 2.7932 -0.0356 2.0834 15 8 3.0227 1.1456 1.9320 16 6 3.3743 -0.7709 3.2634 17 1 3.5197 -1.8199 3.0051 18 8 4.6313 -0.1858 3.6228 19 6 5.3347 -0.9387 4.6139 20 6 4.4155 -1.2513 5.7618 21 8 4.8961 -1.6217 6.8118 22 7 3.0864 -1.1359 5.6683 23 6 2.2639 -1.5018 6.8240 24 6 2.4231 -0.6597 4.4569 25 1 2.1312 0.3819 4.5913 26 6 1.1952 -1.4941 4.1977 27 6 -0.0106 -0.8884 3.8776 28 6 -1.1126 -1.6959 3.6430 29 6 -0.9764 -3.0677 3.7447 30 7 0.1848 -3.6089 4.0562 31 6 1.2553 -2.8721 4.2812 32 1 -0.3634 0.5137 0.8899 33 1 -0.3634 0.5138 -0.8900 34 1 -0.3633 -1.0277 -0.0005 35 1 0.7089 1.1614 -3.4844 36 1 0.7020 -2.1458 1.9369 37 1 1.5992 -2.6140 0.4727 38 1 2.4288 -2.5633 2.0467 39 1 5.6948 -1.8688 4.1744 40 1 6.1824 -0.3573 4.9766 41 1 2.0012 -2.5580 6.7633 42 1 2.8240 -1.3188 7.7411 43 1 1.3545 -0.9009 6.8277 44 1 -0.0881 0.1865 3.8089 45 1 -2.0664 -1.2586 3.3872 46 1 -1.8313 -3.7035 3.5675 47 1 2.1895 -3.3512 4.5344 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361568556.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:00 Heat of formation + Delta-G solvation = -61.955825 kcal Electronic energy + Delta-G solvation = -33083.911443 eV Core-core repulsion = 28846.544962 eV Total energy + Delta-G solvation = -4237.366481 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.71307 -41.00515 -40.62951 -38.77494 -37.19949 -37.07932 -34.93685 -33.82808 -32.85213 -31.58897 -30.43092 -29.89513 -27.74013 -27.29707 -26.59949 -26.34933 -24.62773 -23.34915 -22.91654 -20.63394 -20.15715 -19.23969 -18.69151 -18.38188 -18.21023 -17.72918 -17.35160 -17.27564 -16.79555 -16.40465 -16.17747 -15.98839 -15.76037 -15.50077 -15.27190 -14.92357 -14.71595 -14.55426 -14.38179 -14.06107 -13.99832 -13.71777 -13.59911 -13.42511 -13.31869 -13.10204 -13.01844 -12.88066 -12.71767 -12.68028 -12.64162 -12.19334 -12.11593 -11.75938 -11.19590 -10.83794 -10.78035 -10.69961 -10.51596 -10.46695 -10.10066 -9.92378 -9.42798 -8.14894 -6.30483 -0.01624 0.28784 1.19765 1.32365 1.41350 1.44399 1.53879 1.67040 1.87540 2.40968 2.74790 2.78306 3.02188 3.14201 3.24509 3.34973 3.51618 3.52142 3.62327 3.85219 3.99188 4.05253 4.12060 4.21935 4.26470 4.39229 4.45018 4.51397 4.55322 4.58170 4.76226 4.78346 4.80269 4.89623 4.91897 4.96891 5.05813 5.14342 5.25339 5.41156 5.47612 5.58756 5.66398 5.69023 6.01871 6.04096 6.15789 6.65495 6.76001 6.76585 6.96472 7.18921 7.41974 8.89476 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012783 B = 0.004211 C = 0.003554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2189.959186 B = 6647.091299 C = 7875.713306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.266 3.734 3 H 0.013 0.987 4 C -0.539 4.539 5 H 0.060 0.940 6 C 0.021 3.979 7 N -0.913 5.913 8 Si 0.959 3.041 9 H -0.266 1.266 10 H -0.275 1.275 11 H -0.287 1.287 12 N -0.577 5.577 13 C 0.080 3.920 14 C 0.513 3.487 15 O -0.575 6.575 16 C 0.071 3.929 17 H 0.112 0.888 18 O -0.363 6.363 19 C 0.043 3.957 20 C 0.489 3.511 21 O -0.565 6.565 22 N -0.595 5.595 23 C 0.082 3.918 24 C 0.187 3.813 25 H 0.091 0.909 26 C -0.164 4.164 27 C -0.056 4.056 28 C -0.161 4.161 29 C 0.107 3.893 30 N -0.493 5.493 31 C 0.120 3.880 32 H 0.026 0.974 33 H 0.066 0.934 34 H 0.043 0.957 35 H 0.264 0.736 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.122 0.878 40 H 0.154 0.846 41 H 0.067 0.933 42 H 0.076 0.924 43 H 0.083 0.917 44 H 0.132 0.868 45 H 0.159 0.841 46 H 0.184 0.816 47 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.135 -9.112 15.775 18.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.164 3.836 3 H 0.031 0.969 4 C -0.578 4.578 5 H 0.078 0.922 6 C -0.179 4.179 7 N -0.552 5.552 8 Si 0.785 3.215 9 H -0.191 1.191 10 H -0.201 1.201 11 H -0.213 1.213 12 N -0.308 5.308 13 C -0.063 4.063 14 C 0.299 3.701 15 O -0.455 6.455 16 C 0.009 3.991 17 H 0.129 0.871 18 O -0.281 6.281 19 C -0.036 4.036 20 C 0.278 3.722 21 O -0.445 6.445 22 N -0.327 5.327 23 C -0.059 4.059 24 C 0.082 3.918 25 H 0.109 0.891 26 C -0.167 4.167 27 C -0.083 4.083 28 C -0.181 4.181 29 C -0.049 4.049 30 N -0.202 5.202 31 C -0.037 4.037 32 H 0.045 0.955 33 H 0.085 0.915 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.139 0.861 40 H 0.172 0.828 41 H 0.086 0.914 42 H 0.095 0.905 43 H 0.101 0.899 44 H 0.150 0.850 45 H 0.177 0.823 46 H 0.201 0.799 47 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -2.734 -9.325 16.069 18.779 hybrid contribution 0.188 0.899 -1.094 1.429 sum -2.546 -8.426 14.975 17.370 Atomic orbital electron populations 1.21799 0.96467 0.99946 1.00187 1.18603 0.92054 0.92138 0.80762 0.96870 1.21576 1.31991 1.13113 0.91115 0.92203 1.25628 0.95032 0.95561 1.01723 1.70007 1.37133 1.23695 1.24370 0.85486 0.78230 0.78538 0.79243 1.19050 1.20054 1.21281 1.48036 1.48251 1.12748 1.21775 1.22084 1.00600 0.81049 1.02547 1.20077 0.79467 0.86936 0.83662 1.90674 1.61028 1.17496 1.76311 1.22396 0.85530 0.98747 0.92403 0.87079 1.88347 1.30959 1.50056 1.58708 1.23228 0.94449 1.00693 0.85189 1.21262 0.83261 0.77122 0.90558 1.90730 1.75071 1.48558 1.30186 1.47487 1.06119 1.64810 1.14281 1.21798 0.95154 1.01264 0.87678 1.20090 0.89959 0.98396 0.83392 0.89133 1.20586 0.94734 0.95790 1.05558 1.21582 0.91868 1.01194 0.93615 1.22392 1.00357 0.95058 1.00259 1.23315 0.95596 0.93401 0.92606 1.67820 0.99763 1.40532 1.12049 1.22528 0.97543 0.89271 0.94371 0.95488 0.91492 0.93787 0.92624 0.91641 0.91252 0.90562 0.86090 0.82831 0.91396 0.90515 0.89860 0.85003 0.82323 0.79936 0.82722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.53 8.97 71.98 0.65 -4.88 16 2 C 0.27 12.95 2.63 44.25 0.12 13.06 16 3 H 0.01 0.79 6.91 -2.39 -0.02 0.77 16 4 C -0.54 -27.99 8.02 25.60 0.21 -27.79 16 5 H 0.06 3.04 7.27 -2.91 -0.02 3.02 16 6 C 0.02 1.09 5.30 84.65 0.45 1.54 16 7 N -0.91 -50.53 11.32 21.45 0.24 -50.28 16 8 Si 0.96 41.74 29.54 68.60 2.03 43.77 16 9 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 10 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 11 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 12 N -0.58 -22.52 2.75 -826.80 -2.28 -24.79 16 13 C 0.08 2.41 7.40 127.77 0.95 3.36 16 14 C 0.51 20.07 6.57 87.66 0.58 20.65 16 15 O -0.58 -28.31 16.10 13.74 0.22 -28.09 16 16 C 0.07 2.02 2.13 29.85 0.06 2.08 16 17 H 0.11 2.67 5.57 -2.38 -0.01 2.65 16 18 O -0.36 -10.78 10.22 -132.21 -1.35 -12.13 16 19 C 0.04 0.91 6.99 71.12 0.50 1.40 16 20 C 0.49 11.67 7.59 87.71 0.67 12.33 16 21 O -0.57 -16.28 16.35 -3.02 -0.05 -16.33 16 22 N -0.59 -12.81 2.74 -829.74 -2.27 -15.09 16 23 C 0.08 1.46 9.03 127.77 1.15 2.62 16 24 C 0.19 4.40 2.59 44.33 0.11 4.51 16 25 H 0.09 2.36 7.94 -2.39 -0.02 2.35 16 26 C -0.16 -3.35 1.81 -19.77 -0.04 -3.39 16 27 C -0.06 -1.14 8.83 22.47 0.20 -0.94 16 28 C -0.16 -2.68 9.42 22.36 0.21 -2.46 16 29 C 0.11 1.74 10.57 84.69 0.90 2.64 16 30 N -0.49 -9.66 10.27 -195.85 -2.01 -11.67 16 31 C 0.12 2.31 6.72 84.67 0.57 2.88 16 32 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.07 3.36 6.07 -2.39 -0.01 3.34 16 34 H 0.04 1.76 7.67 -2.39 -0.02 1.75 16 35 H 0.26 13.89 8.31 -92.71 -0.77 13.12 16 36 H 0.07 1.77 4.04 -2.39 -0.01 1.76 16 37 H 0.07 2.31 6.97 -2.39 -0.02 2.30 16 38 H 0.08 1.91 4.55 -2.38 -0.01 1.90 16 39 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.15 2.73 8.14 -2.39 -0.02 2.71 16 41 H 0.07 1.11 7.29 -2.38 -0.02 1.09 16 42 H 0.08 1.49 7.23 -2.39 -0.02 1.47 16 43 H 0.08 1.26 7.83 -2.39 -0.02 1.24 16 44 H 0.13 2.77 8.04 -2.91 -0.02 2.74 16 45 H 0.16 1.97 8.06 -2.91 -0.02 1.95 16 46 H 0.18 1.95 8.06 -2.91 -0.02 1.93 16 47 H 0.16 2.72 7.90 -2.91 -0.02 2.70 16 Total: -1.00 -71.30 369.31 2.80 -68.50 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: 1.01 Total: 18.52 kcal Atomic # 6 Polarization: 20.33 SS G_CDS: 7.27 Total: 27.60 kcal Atomic # 7 Polarization: -95.52 SS G_CDS: -6.32 Total: -101.84 kcal Atomic # 8 Polarization: -55.37 SS G_CDS: -1.18 Total: -56.55 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal Total: -71.30 2.80 -68.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361568556.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.540 kcal (2) G-P(sol) polarization free energy of solvation -71.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds