Wall clock time and date at job start Wed Apr 1 2020 04:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.47096 * 2 1 4 4 C 1.50693 * 109.47330 * 120.00339 * 2 1 3 5 5 H 1.08002 * 120.00467 * 119.99532 * 4 2 1 6 6 C 1.37879 * 120.00012 * 299.99438 * 4 2 1 7 7 N 1.31512 * 119.99927 * 179.97438 * 6 4 2 8 8 Si 1.86801 * 119.99813 * 0.02562 * 6 4 2 9 9 H 1.48506 * 109.47147 * 89.99842 * 8 6 4 10 10 H 1.48499 * 109.46962 * 209.99294 * 8 6 4 11 11 H 1.48498 * 109.47006 * 329.99802 * 8 6 4 12 12 N 1.46505 * 109.46783 * 240.00145 * 2 1 3 13 13 C 1.46493 * 119.99943 * 299.99862 * 12 2 1 14 14 C 1.34777 * 119.99638 * 120.00081 * 12 2 1 15 15 O 1.21279 * 120.00671 * 4.26353 * 14 12 2 16 16 C 1.50703 * 119.99557 * 184.26751 * 14 12 2 17 17 H 1.08996 * 109.60560 * 28.80686 * 16 14 12 18 18 O 1.43241 * 109.60419 * 149.13590 * 16 14 12 19 19 C 1.42968 * 112.99011 * 188.11494 * 18 16 14 20 20 C 1.50350 * 109.75197 * 310.43866 * 19 18 16 21 21 O 1.21278 * 118.82963 * 195.86449 * 20 19 18 22 22 N 1.33733 * 122.43614 * 15.84687 * 20 19 18 23 23 C 1.46498 * 118.76939 * 178.11585 * 22 20 19 24 24 C 1.46089 * 122.49874 * 358.16894 * 22 20 19 25 25 H 1.09006 * 109.31714 * 258.23352 * 24 22 20 26 26 C 1.50707 * 109.39475 * 138.47334 * 24 22 20 27 27 C 1.38673 * 120.41656 * 133.52577 * 26 24 22 28 28 C 1.38625 * 118.41691 * 179.78170 * 27 26 24 29 29 C 1.38233 * 119.16306 * 0.47052 * 28 27 26 30 30 N 1.31856 * 120.75775 * 359.76767 * 29 28 27 31 31 C 1.31880 * 121.73077 * 359.97438 * 30 29 28 32 32 H 1.09003 * 109.47096 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.46636 * 299.99555 * 1 2 3 34 34 H 1.09000 * 109.47475 * 59.99766 * 1 2 3 35 35 H 0.97004 * 120.00049 * 179.97438 * 7 6 4 36 36 H 1.09003 * 109.47116 * 274.06472 * 13 12 2 37 37 H 1.09004 * 109.47424 * 34.06562 * 13 12 2 38 38 H 1.09006 * 109.47186 * 154.06429 * 13 12 2 39 39 H 1.08999 * 109.41338 * 70.49796 * 19 18 16 40 40 H 1.08997 * 109.41795 * 190.36215 * 19 18 16 41 41 H 1.08999 * 109.46984 * 270.04932 * 23 22 20 42 42 H 1.09000 * 109.46945 * 30.04889 * 23 22 20 43 43 H 1.08999 * 109.46983 * 150.04729 * 23 22 20 44 44 H 1.08004 * 120.79326 * 0.02562 * 27 26 24 45 45 H 1.07998 * 120.42224 * 180.26675 * 28 27 26 46 46 H 1.07998 * 119.62079 * 179.75157 * 29 28 27 47 47 H 1.08002 * 119.62206 * 179.97438 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2303 5 1 2.6533 -1.5886 1.1313 6 6 1.6994 -0.2394 2.4827 7 7 2.1374 -0.8597 3.5564 8 14 0.6250 1.2790 2.6541 9 1 -0.8027 0.8727 2.6999 10 1 0.9761 1.9950 3.9069 11 1 0.8472 2.1764 1.4921 12 7 2.0183 -0.6906 -1.1963 13 6 1.6644 -2.0931 -1.4281 14 6 2.7931 -0.0356 -2.0834 15 8 3.1501 1.1006 -1.8541 16 6 3.2159 -0.7150 -3.3604 17 1 2.4621 -1.4461 -3.6526 18 8 3.3656 0.2616 -4.3976 19 6 3.5852 -0.3202 -5.6849 20 6 4.6817 -1.3452 -5.5989 21 8 5.2040 -1.7303 -6.6235 22 7 5.1034 -1.8485 -4.4339 23 6 6.1489 -2.8746 -4.4462 24 6 4.5601 -1.4149 -3.1489 25 1 5.2582 -0.7232 -2.6773 26 6 4.3651 -2.6143 -2.2576 27 6 4.7920 -2.5856 -0.9385 28 6 4.5876 -3.7103 -0.1543 29 6 3.9784 -4.8187 -0.7121 30 7 3.5897 -4.8120 -1.9720 31 6 3.7633 -3.7583 -2.7459 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8901 34 1 -0.3634 0.5139 -0.8899 35 1 1.9035 -0.5281 4.4375 36 1 2.3754 -2.7375 -0.9110 37 1 0.6601 -2.2820 -1.0485 38 1 1.6941 -2.3035 -2.4972 39 1 2.6678 -0.7990 -6.0273 40 1 3.8723 0.4593 -6.3906 41 1 5.6892 -3.8611 -4.5061 42 1 6.7969 -2.7226 -5.3094 43 1 6.7386 -2.8034 -3.5322 44 1 5.2687 -1.7065 -0.5306 45 1 4.9034 -3.7217 0.8784 46 1 3.8192 -5.7004 -0.1090 47 1 3.4321 -3.7902 -3.7734 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361568558.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:06 Heat of formation + Delta-G solvation = -31.283292 kcal Electronic energy + Delta-G solvation = -33280.016618 eV Core-core repulsion = 29043.980199 eV Total energy + Delta-G solvation = -4236.036420 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.65526 -40.00688 -39.34243 -37.64050 -36.12878 -35.64624 -33.24117 -32.64112 -31.78455 -30.64121 -29.48398 -28.97047 -26.49141 -25.71092 -25.39975 -25.07924 -23.63401 -22.29275 -21.50119 -19.43450 -18.81737 -18.18329 -17.44430 -17.38372 -16.78766 -16.54461 -16.20620 -16.10457 -15.56934 -15.35130 -15.05001 -14.78443 -14.71740 -14.19974 -14.08096 -13.76700 -13.54829 -13.31313 -13.08553 -13.02164 -12.90580 -12.52725 -12.41575 -12.37485 -12.29601 -12.06984 -11.88917 -11.71514 -11.70206 -11.25528 -10.79326 -10.73601 -10.24167 -9.83814 -9.74709 -9.71505 -9.54306 -9.46517 -9.21196 -9.12866 -8.93432 -8.72892 -7.92632 -6.24613 -4.25372 0.94593 1.29692 2.21249 2.43039 2.84320 3.03343 3.16736 3.31014 3.32691 3.76554 3.89315 4.01703 4.26137 4.26794 4.44384 4.48835 4.58823 4.70933 4.83807 4.90860 4.96053 5.03657 5.07815 5.09718 5.24262 5.27837 5.40769 5.48148 5.54117 5.61730 5.72707 5.79631 5.89917 6.06318 6.12660 6.15904 6.21643 6.24958 6.34364 6.44893 6.63777 6.72391 6.96483 7.01322 7.14532 7.49559 7.74103 7.90115 7.94753 8.31869 8.60994 8.75810 9.36520 10.87551 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013423 B = 0.004607 C = 0.003773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2085.509758 B = 6076.184134 C = 7418.999108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.231 3.769 3 H 0.065 0.935 4 C -0.526 4.526 5 H 0.081 0.919 6 C 0.079 3.921 7 N -0.892 5.892 8 Si 0.880 3.120 9 H -0.277 1.277 10 H -0.294 1.294 11 H -0.263 1.263 12 N -0.573 5.573 13 C 0.078 3.922 14 C 0.519 3.481 15 O -0.522 6.522 16 C 0.061 3.939 17 H 0.092 0.908 18 O -0.339 6.339 19 C 0.045 3.955 20 C 0.488 3.512 21 O -0.541 6.541 22 N -0.598 5.598 23 C 0.081 3.919 24 C 0.176 3.824 25 H 0.103 0.897 26 C -0.166 4.166 27 C -0.036 4.036 28 C -0.152 4.152 29 C 0.106 3.894 30 N -0.483 5.483 31 C 0.115 3.885 32 H 0.056 0.944 33 H 0.052 0.948 34 H 0.034 0.966 35 H 0.266 0.734 36 H 0.061 0.939 37 H 0.073 0.927 38 H 0.052 0.948 39 H 0.094 0.906 40 H 0.138 0.862 41 H 0.059 0.941 42 H 0.082 0.918 43 H 0.071 0.929 44 H 0.138 0.862 45 H 0.142 0.858 46 H 0.157 0.843 47 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.309 -6.353 -12.683 14.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.130 3.870 3 H 0.082 0.918 4 C -0.564 4.564 5 H 0.099 0.901 6 C -0.125 4.125 7 N -0.530 5.530 8 Si 0.709 3.291 9 H -0.204 1.204 10 H -0.221 1.221 11 H -0.188 1.188 12 N -0.305 5.305 13 C -0.065 4.065 14 C 0.303 3.697 15 O -0.398 6.398 16 C 0.000 4.000 17 H 0.110 0.890 18 O -0.256 6.256 19 C -0.034 4.034 20 C 0.276 3.724 21 O -0.419 6.419 22 N -0.331 5.331 23 C -0.061 4.061 24 C 0.071 3.929 25 H 0.121 0.879 26 C -0.168 4.168 27 C -0.062 4.062 28 C -0.172 4.172 29 C -0.050 4.050 30 N -0.191 5.191 31 C -0.043 4.043 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.053 0.947 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.092 0.908 38 H 0.071 0.929 39 H 0.112 0.888 40 H 0.155 0.845 41 H 0.078 0.922 42 H 0.100 0.900 43 H 0.090 0.910 44 H 0.156 0.844 45 H 0.160 0.840 46 H 0.175 0.825 47 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 3.354 -6.489 -13.183 15.071 hybrid contribution -0.313 1.136 0.763 1.404 sum 3.041 -5.352 -12.420 13.862 Atomic orbital electron populations 1.22478 0.98941 1.01181 0.99508 1.19373 0.90037 0.95173 0.82440 0.91776 1.21075 1.32940 1.14230 0.88185 0.90101 1.24820 0.95549 0.96440 0.95647 1.69848 1.45080 1.40047 0.97977 0.86973 0.80539 0.83950 0.77591 1.20418 1.22109 1.18808 1.47772 1.48376 1.11640 1.22690 1.21974 1.02426 0.82928 0.99197 1.19378 0.80048 0.86613 0.83662 1.90705 1.54448 1.18060 1.76572 1.22548 0.95849 0.91457 0.90194 0.89023 1.88353 1.92592 1.30020 1.14635 1.22965 0.96487 0.96819 0.87140 1.21041 0.84926 0.83196 0.83219 1.90737 1.56675 1.61186 1.33255 1.47491 1.39314 1.40946 1.05345 1.21720 0.90552 0.90401 1.03384 1.20317 0.95775 0.93581 0.83234 0.87924 1.20677 1.03779 0.96646 0.95744 1.21484 0.94517 0.98330 0.91908 1.22207 0.99705 0.93721 1.01550 1.22840 0.92982 0.98000 0.91142 1.67742 1.17513 1.27993 1.05874 1.22379 0.94563 0.88211 0.99164 0.92483 0.92920 0.94672 0.92396 0.92042 0.90808 0.92922 0.88818 0.84480 0.92210 0.89970 0.90994 0.84371 0.84004 0.82546 0.83669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.30 8.64 37.16 0.32 -2.98 16 2 C 0.23 5.15 2.23 -69.08 -0.15 5.00 16 3 H 0.06 1.61 5.97 -51.93 -0.31 1.30 16 4 C -0.53 -13.24 8.95 -34.44 -0.31 -13.55 16 5 H 0.08 2.14 7.78 -52.49 -0.41 1.73 16 6 C 0.08 2.09 5.45 -17.82 -0.10 1.99 16 7 N -0.89 -25.06 13.96 55.43 0.77 -24.28 16 8 Si 0.88 20.75 24.37 -169.99 -4.14 16.61 16 9 H -0.28 -6.31 6.87 56.52 0.39 -5.92 16 10 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.26 -6.16 6.53 56.52 0.37 -5.79 16 12 N -0.57 -10.69 2.75 -175.26 -0.48 -11.17 16 13 C 0.08 1.21 7.65 59.84 0.46 1.67 16 14 C 0.52 9.59 6.57 -10.98 -0.07 9.52 16 15 O -0.52 -11.75 16.10 -11.98 -0.19 -11.95 16 16 C 0.06 0.86 2.13 -27.87 -0.06 0.81 16 17 H 0.09 1.11 5.57 -51.93 -0.29 0.82 16 18 O -0.34 -4.83 10.22 -52.77 -0.54 -5.37 16 19 C 0.05 0.49 6.99 35.84 0.25 0.74 16 20 C 0.49 6.11 7.59 -11.62 -0.09 6.02 16 21 O -0.54 -8.09 16.35 5.56 0.09 -7.99 16 22 N -0.60 -7.00 2.74 -176.01 -0.48 -7.48 16 23 C 0.08 0.83 9.03 59.85 0.54 1.37 16 24 C 0.18 2.23 2.59 -69.29 -0.18 2.05 16 25 H 0.10 1.41 7.94 -51.93 -0.41 1.00 16 26 C -0.17 -2.01 1.81 -104.48 -0.19 -2.20 16 27 C -0.04 -0.48 8.83 -39.28 -0.35 -0.82 16 28 C -0.15 -1.91 9.42 -39.44 -0.37 -2.28 16 29 C 0.11 1.26 10.58 -17.54 -0.19 1.07 16 30 N -0.48 -6.01 10.27 -13.25 -0.14 -6.15 16 31 C 0.11 1.33 6.71 -17.55 -0.12 1.22 16 32 H 0.06 1.07 6.68 -51.93 -0.35 0.73 16 33 H 0.05 1.12 3.27 -51.93 -0.17 0.95 16 34 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 36 H 0.06 0.98 3.93 -51.93 -0.20 0.78 16 37 H 0.07 1.15 6.44 -51.93 -0.33 0.82 16 38 H 0.05 0.67 4.54 -51.93 -0.24 0.43 16 39 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.14 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.06 0.58 7.29 -51.93 -0.38 0.20 16 42 H 0.08 0.88 7.23 -51.93 -0.38 0.50 16 43 H 0.07 0.66 7.83 -51.93 -0.41 0.26 16 44 H 0.14 1.91 8.04 -52.48 -0.42 1.48 16 45 H 0.14 1.71 8.06 -52.49 -0.42 1.29 16 46 H 0.16 1.50 8.06 -52.49 -0.42 1.08 16 47 H 0.15 1.54 7.91 -52.49 -0.41 1.12 16 LS Contribution 361.68 15.07 5.45 5.45 Total: -1.00 -32.13 361.68 -6.26 -38.39 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -6.00 Total: 4.34 kcal Atomic # 6 Polarization: 10.21 SS G_CDS: -0.60 Total: 9.61 kcal Atomic # 7 Polarization: -48.76 SS G_CDS: -0.33 Total: -49.09 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: -0.64 Total: -25.31 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.14 Total: 16.61 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.13 -6.26 -38.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361568558.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.106 kcal (2) G-P(sol) polarization free energy of solvation -32.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds