Wall clock time and date at job start Wed Apr 1 2020 05:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.46958 * 2 1 4 4 C 1.47206 * 109.47332 * 239.99668 * 2 1 3 5 5 N 2.60798 * 109.47024 * 239.99683 * 2 1 3 6 6 C 1.50702 * 109.46992 * 119.99845 * 2 1 3 7 7 O 1.21280 * 119.99880 * 120.00108 * 6 2 1 8 8 N 1.34776 * 120.00346 * 300.00059 * 6 2 1 9 9 C 1.46499 * 120.00324 * 180.02562 * 8 6 2 10 10 C 1.52996 * 109.47150 * 179.97438 * 9 8 6 11 11 H 1.09000 * 109.47110 * 305.00040 * 10 9 8 12 12 O 1.42905 * 109.47010 * 64.99907 * 10 9 8 13 13 C 1.53001 * 109.47135 * 184.99581 * 10 9 8 14 14 N 1.46896 * 109.47263 * 180.02562 * 13 10 9 15 15 C 1.46898 * 111.00368 * 180.02562 * 14 13 10 16 16 C 1.50703 * 109.47491 * 179.97438 * 15 14 13 17 17 C 1.38299 * 119.92832 * 269.73053 * 16 15 14 18 18 C 1.38099 * 120.06743 * 179.72590 * 17 16 15 19 19 C 1.38881 * 119.92931 * 0.56497 * 18 17 16 20 20 O 1.35755 * 120.07040 * 179.68418 * 19 18 17 21 21 C 1.34824 * 116.99939 * 174.48426 * 20 19 18 22 22 H 1.08001 * 120.00039 * 5.05902 * 21 20 19 23 23 C 1.38659 * 120.00071 * 185.05515 * 21 20 19 24 24 N 1.31555 * 119.99814 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00099 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.46854 * 90.00286 * 25 23 21 27 27 H 1.48500 * 109.47042 * 210.00283 * 25 23 21 28 28 H 1.48502 * 109.47190 * 330.00338 * 25 23 21 29 29 C 1.38879 * 119.86337 * 359.70266 * 19 18 17 30 30 C 1.38102 * 119.92740 * 0.02562 * 29 19 18 31 31 H 1.09002 * 109.47014 * 299.99697 * 1 2 3 32 32 H 1.09005 * 109.47049 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47482 * 60.00255 * 1 2 3 34 34 H 0.97003 * 119.99585 * 359.97438 * 8 6 2 35 35 H 1.09005 * 109.46510 * 299.99510 * 9 8 6 36 36 H 1.08995 * 109.47130 * 59.99559 * 9 8 6 37 37 H 0.96699 * 114.00241 * 59.99730 * 12 10 9 38 38 H 1.08999 * 109.47036 * 299.99956 * 13 10 9 39 39 H 1.08996 * 109.46926 * 59.99782 * 13 10 9 40 40 H 1.00902 * 111.00330 * 303.95927 * 14 13 10 41 41 H 1.08999 * 109.46967 * 300.00079 * 15 14 13 42 42 H 1.09001 * 109.46971 * 59.99456 * 15 14 13 43 43 H 1.08001 * 119.96954 * 359.97438 * 17 16 15 44 44 H 1.08007 * 120.03840 * 180.26992 * 18 17 16 45 45 H 0.97000 * 120.00268 * 179.97438 * 24 23 21 46 46 H 1.07998 * 120.03939 * 179.97438 * 29 19 18 47 47 H 1.08000 * 119.96543 * 179.97438 * 30 29 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0207 -0.6940 -1.2019 5 7 2.3993 -1.2295 -2.1293 6 6 2.0323 -0.7104 1.2305 7 8 2.7296 -1.6965 1.1192 8 7 1.7067 -0.2500 2.4546 9 6 2.1955 -0.9402 3.6508 10 6 1.6859 -0.2187 4.9000 11 1 1.9742 0.8316 4.8559 12 8 0.2617 -0.3195 4.9607 13 6 2.2963 -0.8634 6.1460 14 7 1.8066 -0.1710 7.3455 15 6 2.3735 -0.7639 8.5641 16 6 1.8500 -0.0288 9.7710 17 6 2.5387 1.0637 10.2659 18 6 2.0585 1.7429 11.3682 19 6 0.8891 1.3207 11.9871 20 8 0.4180 1.9823 13.0748 21 6 -0.7791 1.5925 13.5573 22 1 -1.2795 0.7352 13.1320 23 6 -1.3676 2.2924 14.5997 24 7 -0.7582 3.3370 15.1174 25 14 -3.0258 1.7519 15.2687 26 1 -2.8213 0.7756 16.3689 27 1 -3.7600 2.9344 15.7863 28 1 -3.8143 1.1159 14.1828 29 6 0.2028 0.2199 11.4911 30 6 0.6852 -0.4517 10.3849 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 -0.8900 34 1 1.1493 0.5389 2.5436 35 1 1.8324 -1.9680 3.6509 36 1 3.2854 -0.9398 3.6506 37 1 -0.0669 -1.2280 5.0019 38 1 2.0080 -1.9136 6.1900 39 1 3.3826 -0.7865 6.0997 40 1 2.0046 0.8173 7.2987 41 1 2.0865 -1.8137 8.6248 42 1 3.4603 -0.6856 8.5345 43 1 3.4508 1.3885 9.7873 44 1 2.5944 2.5987 11.7517 45 1 -1.1701 3.8268 15.8464 46 1 -0.7066 -0.1112 11.9703 47 1 0.1522 -1.3080 9.9989 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001401504674.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:53 Heat of formation + Delta-G solvation = -94.544357 kcal Electronic energy + Delta-G solvation = -28076.759421 eV Core-core repulsion = 23837.979795 eV Total energy + Delta-G solvation = -4238.779625 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.15303 -40.75084 -39.16322 -38.39744 -37.66611 -36.06647 -35.39761 -34.25621 -34.15430 -31.92101 -31.70531 -29.99173 -27.60577 -26.69851 -25.88696 -24.33857 -23.57408 -22.71216 -21.91921 -21.87517 -19.80265 -19.29171 -18.79811 -18.20095 -17.74849 -17.23225 -16.57802 -16.43805 -16.29430 -16.12789 -15.95248 -15.67384 -15.52101 -15.42914 -15.04098 -14.79182 -14.71440 -14.61629 -14.26495 -14.12683 -14.03976 -13.75493 -13.55160 -13.46550 -13.23524 -13.17115 -12.90836 -12.74879 -12.65041 -12.39927 -12.38993 -12.26009 -12.11430 -12.00257 -11.82749 -11.14174 -11.13084 -10.80273 -10.73461 -10.15306 -9.72707 -9.23580 -8.85025 -8.44865 -6.12816 0.65223 0.72421 1.36915 1.41606 1.45918 1.47210 1.54314 1.71757 2.19924 2.26556 2.79402 2.83193 3.12653 3.39879 3.56320 3.63636 3.73483 3.94980 3.95986 4.08485 4.12049 4.16283 4.20570 4.24298 4.26457 4.51709 4.59390 4.65676 4.75661 4.78019 4.83351 4.85791 4.88651 4.89174 5.14203 5.16345 5.19593 5.30010 5.35261 5.36117 5.61295 5.76383 5.86560 6.05983 6.13942 6.30002 6.38003 6.53060 6.54947 6.96472 7.00212 7.15515 7.81588 8.78402 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.022272 B = 0.001406 C = 0.001362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.884240 B =19907.973604 C =20559.862344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.003 4.003 3 H 0.188 0.812 4 C 0.241 3.759 5 N -0.480 5.480 6 C 0.523 3.477 7 O -0.586 6.586 8 N -0.698 5.698 9 C 0.092 3.908 10 C 0.113 3.887 11 H 0.111 0.889 12 O -0.558 6.558 13 C 0.028 3.972 14 N -0.684 5.684 15 C 0.123 3.877 16 C -0.157 4.157 17 C -0.060 4.060 18 C -0.206 4.206 19 C 0.112 3.888 20 O -0.235 6.235 21 C -0.413 4.413 22 H 0.101 0.899 23 C -0.022 4.022 24 N -0.921 5.921 25 Si 1.017 2.983 26 H -0.264 1.264 27 H -0.271 1.271 28 H -0.253 1.253 29 C -0.245 4.245 30 C -0.049 4.049 31 H 0.112 0.888 32 H 0.056 0.944 33 H 0.093 0.907 34 H 0.423 0.577 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.385 0.615 38 H 0.082 0.918 39 H 0.050 0.950 40 H 0.343 0.657 41 H 0.081 0.919 42 H 0.047 0.953 43 H 0.148 0.852 44 H 0.111 0.889 45 H 0.272 0.728 46 H 0.115 0.885 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.609 -5.814 -26.524 27.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.027 4.027 3 H 0.204 0.796 4 C -0.077 4.077 5 N -0.156 5.156 6 C 0.308 3.692 7 O -0.466 6.466 8 N -0.351 5.351 9 C -0.033 4.033 10 C 0.053 3.947 11 H 0.129 0.871 12 O -0.364 6.364 13 C -0.101 4.101 14 N -0.316 5.316 15 C -0.005 4.005 16 C -0.158 4.158 17 C -0.078 4.078 18 C -0.225 4.225 19 C 0.062 3.938 20 O -0.142 6.142 21 C -0.489 4.489 22 H 0.118 0.882 23 C -0.220 4.220 24 N -0.559 5.559 25 Si 0.837 3.163 26 H -0.188 1.188 27 H -0.196 1.196 28 H -0.177 1.177 29 C -0.265 4.265 30 C -0.068 4.068 31 H 0.130 0.870 32 H 0.075 0.925 33 H 0.112 0.888 34 H 0.262 0.738 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.234 0.766 38 H 0.100 0.900 39 H 0.068 0.932 40 H 0.161 0.839 41 H 0.099 0.901 42 H 0.065 0.935 43 H 0.166 0.834 44 H 0.129 0.871 45 H 0.081 0.919 46 H 0.133 0.867 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.202 -6.716 -27.693 28.675 hybrid contribution 0.060 0.118 1.179 1.186 sum 3.261 -6.598 -26.514 27.517 Atomic orbital electron populations 1.21893 0.87310 1.04118 1.06693 1.19175 1.00242 1.01268 0.82045 0.79557 1.28966 0.92121 0.92603 0.94036 1.81218 1.09958 1.09935 1.14471 1.20409 0.79590 0.83930 0.85321 1.90799 1.40033 1.28458 1.87353 1.45606 1.52976 1.32472 1.04002 1.22040 1.00142 0.96890 0.84249 1.21989 0.81556 1.00709 0.90415 0.87077 1.86605 1.19551 1.33807 1.96450 1.22613 0.98149 0.99531 0.89854 1.60373 1.62855 1.07683 1.00667 1.20603 0.96204 0.97746 0.85975 1.19647 0.97210 0.99191 0.99790 1.20901 0.99190 0.93979 0.93726 1.20449 0.97404 1.04136 1.00528 1.19977 0.94392 0.92081 0.87394 1.83935 1.35748 1.55709 1.38767 1.21809 0.94757 1.14653 1.17698 0.88203 1.26561 1.03820 0.95333 0.96244 1.70181 1.40692 1.19475 1.25599 0.84606 0.74767 0.78133 0.78834 1.18850 1.19588 1.17667 1.21260 1.03480 0.99566 1.02145 1.20903 0.94972 0.98206 0.92691 0.86957 0.92520 0.88792 0.73782 0.91148 0.90616 0.76578 0.89970 0.93192 0.83857 0.90093 0.93511 0.83447 0.87081 0.91893 0.86730 0.84692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.06 9.04 71.98 0.65 0.72 16 2 C 0.00 -0.01 3.10 -13.34 -0.04 -0.05 16 3 H 0.19 -0.91 8.14 -2.39 -0.02 -0.93 16 4 C 0.24 3.61 13.88 89.44 1.24 4.85 16 5 N -0.48 -11.01 18.54 20.01 0.37 -10.64 16 6 C 0.52 5.27 7.14 87.66 0.63 5.90 16 7 O -0.59 -12.73 16.03 -3.03 -0.05 -12.78 16 8 N -0.70 -3.23 5.40 -463.07 -2.50 -5.73 16 9 C 0.09 0.61 5.31 86.38 0.46 1.07 16 10 C 0.11 0.76 3.21 30.59 0.10 0.85 16 11 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 12 O -0.56 -5.46 13.15 -148.98 -1.96 -7.42 16 13 C 0.03 0.27 5.35 86.30 0.46 0.73 16 14 N -0.68 -10.91 6.36 -517.94 -3.29 -14.20 16 15 C 0.12 2.30 5.81 85.56 0.50 2.80 16 16 C -0.16 -4.43 5.40 -19.83 -0.11 -4.53 16 17 C -0.06 -1.82 9.69 22.25 0.22 -1.61 16 18 C -0.21 -8.46 9.99 22.39 0.22 -8.23 16 19 C 0.11 5.50 6.65 22.58 0.15 5.65 16 20 O -0.23 -14.12 9.76 -22.73 -0.22 -14.34 16 21 C -0.41 -24.03 9.49 67.92 0.64 -23.39 16 22 H 0.10 5.34 5.20 -2.91 -0.02 5.33 16 23 C -0.02 -1.26 5.49 84.83 0.47 -0.79 16 24 N -0.92 -56.36 13.67 21.61 0.30 -56.06 16 25 Si 1.02 42.58 29.55 68.60 2.03 44.61 16 26 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 27 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 28 H -0.25 -9.84 7.11 99.48 0.71 -9.13 16 29 C -0.25 -10.52 9.17 22.39 0.21 -10.32 16 30 C -0.05 -1.63 9.69 22.25 0.22 -1.41 16 31 H 0.11 -0.59 7.56 -2.39 -0.02 -0.60 16 32 H 0.06 0.19 8.14 -2.38 -0.02 0.17 16 33 H 0.09 -0.22 8.14 -2.39 -0.02 -0.23 16 34 H 0.42 -0.34 7.89 -92.71 -0.73 -1.08 16 35 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 36 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.39 2.24 9.05 -74.06 -0.67 1.57 16 38 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 40 H 0.34 5.61 8.72 -89.69 -0.78 4.82 16 41 H 0.08 1.42 8.08 -2.39 -0.02 1.40 16 42 H 0.05 0.75 8.08 -2.39 -0.02 0.73 16 43 H 0.15 3.33 8.06 -2.91 -0.02 3.31 16 44 H 0.11 4.54 8.06 -2.91 -0.02 4.52 16 45 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 46 H 0.11 5.07 5.64 -2.91 -0.02 5.05 16 47 H 0.14 3.70 8.06 -2.91 -0.02 3.68 16 Total: -1.00 -87.89 410.03 -0.47 -88.36 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: -1.15 Total: 15.97 kcal Atomic # 6 Polarization: -33.78 SS G_CDS: 6.01 Total: -27.77 kcal Atomic # 7 Polarization: -81.51 SS G_CDS: -5.12 Total: -86.63 kcal Atomic # 8 Polarization: -32.31 SS G_CDS: -2.23 Total: -34.54 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Total: -87.89 -0.47 -88.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001401504674.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.182 kcal (2) G-P(sol) polarization free energy of solvation -87.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds