Wall clock time and date at job start Wed Apr 1 2020 05:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47068 * 2 1 4 4 O 1.42900 * 109.46546 * 239.99826 * 2 1 3 5 5 C 1.50698 * 109.47193 * 119.99961 * 2 1 3 6 6 O 1.21289 * 119.99800 * 114.99614 * 5 2 1 7 7 N 1.34773 * 120.00470 * 294.99970 * 5 2 1 8 8 C 1.46958 * 120.59651 * 180.02562 * 7 5 2 9 9 C 1.53368 * 108.63911 * 124.75050 * 8 7 5 10 10 N 1.46972 * 108.63473 * 49.41926 * 9 8 7 11 11 C 1.34773 * 120.59001 * 124.75263 * 10 9 8 12 12 O 1.21582 * 120.00393 * 354.75032 * 11 10 9 13 13 N 1.34782 * 119.99473 * 174.74584 * 11 10 9 14 14 C 1.39962 * 119.99647 * 184.60647 * 13 11 10 15 15 C 1.39291 * 119.94363 * 143.97301 * 14 13 11 16 16 C 1.38482 * 120.42477 * 179.97438 * 15 14 13 17 17 C 1.37677 * 120.32562 * 0.02562 * 16 15 14 18 18 C 1.40743 * 119.88608 * 0.02562 * 17 16 15 19 19 C 1.41400 * 120.21284 * 179.97438 * 18 17 16 20 20 H 1.08004 * 120.00302 * 209.07180 * 19 18 17 21 21 C 1.39929 * 120.00117 * 29.07743 * 19 18 17 22 22 N 1.30830 * 120.00197 * 9.83017 * 21 19 18 23 23 Si 1.86798 * 120.00260 * 189.83447 * 21 19 18 24 24 H 1.48502 * 109.47128 * 94.99064 * 23 21 19 25 25 H 1.48493 * 109.47470 * 214.99437 * 23 21 19 26 26 H 1.48505 * 109.47072 * 334.99386 * 23 21 19 27 27 C 1.38227 * 119.94849 * 323.69546 * 14 13 11 28 28 C 1.46957 * 118.81029 * 304.77803 * 10 9 8 29 29 C 1.46972 * 120.59001 * 359.97366 * 7 5 2 30 30 H 1.09004 * 109.46799 * 299.99899 * 1 2 3 31 31 H 1.08991 * 109.47309 * 59.99667 * 1 2 3 32 32 H 1.09000 * 109.47397 * 180.02562 * 1 2 3 33 33 H 0.96697 * 114.00480 * 300.00260 * 4 2 1 34 34 H 1.08998 * 109.61492 * 5.00318 * 8 7 5 35 35 H 1.09005 * 109.61264 * 244.49067 * 8 7 5 36 36 H 1.08997 * 109.61361 * 169.16499 * 9 8 7 37 37 H 1.09004 * 109.60894 * 289.67998 * 9 8 7 38 38 H 0.97000 * 120.00273 * 4.61251 * 13 11 10 39 39 H 1.08001 * 119.78549 * 359.97438 * 15 14 13 40 40 H 1.08004 * 119.83871 * 180.02562 * 16 15 14 41 41 H 1.08008 * 120.06150 * 179.97438 * 17 16 15 42 42 H 0.96997 * 120.00380 * 179.97438 * 22 21 19 43 43 H 1.08004 * 120.15982 * 0.02562 * 27 14 13 44 44 H 1.09007 * 109.61053 * 174.96666 * 28 10 9 45 45 H 1.08998 * 109.61804 * 295.47918 * 28 10 9 46 46 H 1.09004 * 109.60616 * 115.50636 * 29 7 5 47 47 H 1.08997 * 109.60920 * 354.99585 * 29 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0062 -0.6737 -1.1668 5 6 2.0324 -0.7104 1.2304 6 8 2.6530 -1.7468 1.1214 7 7 1.7920 -0.1942 2.4520 8 6 2.2763 -0.8758 3.6605 9 6 3.1248 0.1104 4.4728 10 7 2.3741 1.3653 4.6200 11 6 2.1338 1.8815 5.8415 12 8 2.4545 1.2619 6.8372 13 7 1.5378 3.0846 5.9593 14 6 1.3752 3.6643 7.2228 15 6 1.4924 5.0438 7.3752 16 6 1.3329 5.6279 8.6206 17 6 1.0569 4.8504 9.7228 18 6 0.9367 3.4550 9.5844 19 6 0.6539 2.6498 10.7118 20 1 1.0055 1.6292 10.7485 21 6 -0.0816 3.1752 11.7800 22 7 -0.6704 4.3373 11.6601 23 14 -0.2227 2.2173 13.3775 24 1 0.8189 2.6834 14.3278 25 1 -1.5667 2.4370 13.9694 26 1 -0.0322 0.7699 13.1053 27 6 1.0928 2.8674 8.3164 28 6 1.8899 2.0469 3.4114 29 6 1.0418 1.0610 2.5992 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.7208 -1.5952 -1.2330 34 1 2.8846 -1.7348 3.3773 35 1 1.4274 -1.2070 4.2589 36 1 3.3320 -0.3096 5.4570 37 1 4.0616 0.3037 3.9501 38 1 1.2216 3.5488 5.1684 39 1 1.7092 5.6619 6.5165 40 1 1.4254 6.6986 8.7279 41 1 0.9337 5.3104 10.6923 42 1 -1.1805 4.7013 12.4004 43 1 0.9977 1.7980 8.1985 44 1 1.2815 2.9059 3.6947 45 1 2.7387 2.3781 2.8131 46 1 0.1048 0.8680 3.1217 47 1 0.8349 1.4811 1.6149 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413569637.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:14 Heat of formation + Delta-G solvation = -64.936411 kcal Electronic energy + Delta-G solvation = -30441.378058 eV Core-core repulsion = 26203.882330 eV Total energy + Delta-G solvation = -4237.495729 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.07783 -40.06269 -38.02446 -37.10674 -36.67224 -34.58978 -34.36057 -33.12774 -32.17039 -30.85171 -29.79748 -28.70610 -27.41757 -25.30170 -24.98240 -24.24554 -22.80796 -21.34612 -20.94372 -20.26259 -19.24616 -18.60036 -17.79868 -17.28404 -17.09063 -16.17147 -16.02130 -15.66732 -15.65725 -15.27782 -15.02302 -14.70342 -14.57379 -14.48607 -14.11398 -14.00719 -13.53480 -13.09040 -13.04609 -12.93420 -12.82601 -12.50494 -12.23782 -12.16130 -11.97146 -11.88533 -11.60725 -11.54679 -11.19511 -11.16916 -11.12493 -10.94489 -10.44159 -10.23335 -9.91707 -9.69859 -9.52221 -9.47288 -9.16049 -8.98319 -8.55138 -7.40868 -6.92019 -6.64082 -4.33995 2.11230 2.29654 2.69279 2.80731 2.94987 3.11069 3.16023 3.21475 3.56275 3.74214 3.84479 3.98251 4.02998 4.33005 4.37448 4.43459 4.51608 4.63214 4.69376 4.80784 4.99452 5.01945 5.06284 5.16753 5.27035 5.33586 5.49759 5.51558 5.69812 5.70152 5.99030 6.21669 6.28724 6.37311 6.68646 6.74226 6.84601 7.04632 7.06361 7.11717 7.21665 7.30750 7.65892 7.66736 7.77477 7.97962 8.13203 8.23010 8.33923 8.68646 8.85809 8.98072 9.00495 10.28117 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.020193 B = 0.002181 C = 0.002080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.296085 B =12834.256194 C =13457.966425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.090 3.910 3 H 0.125 0.875 4 O -0.539 6.539 5 C 0.487 3.513 6 O -0.534 6.534 7 N -0.606 5.606 8 C 0.095 3.905 9 C 0.118 3.882 10 N -0.635 5.635 11 C 0.703 3.297 12 O -0.559 6.559 13 N -0.679 5.679 14 C 0.160 3.840 15 C -0.257 4.257 16 C -0.096 4.096 17 C -0.165 4.165 18 C 0.117 3.883 19 C -0.457 4.457 20 H 0.077 0.923 21 C 0.072 3.928 22 N -0.805 5.805 23 Si 0.911 3.089 24 H -0.269 1.269 25 H -0.278 1.278 26 H -0.262 1.262 27 C -0.203 4.203 28 C 0.096 3.904 29 C 0.084 3.916 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.384 0.616 34 H 0.104 0.896 35 H 0.077 0.923 36 H 0.110 0.890 37 H 0.068 0.932 38 H 0.392 0.608 39 H 0.088 0.912 40 H 0.092 0.908 41 H 0.121 0.879 42 H 0.278 0.722 43 H 0.112 0.888 44 H 0.092 0.908 45 H 0.075 0.925 46 H 0.083 0.917 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.045 -4.152 -20.803 21.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.027 3.973 3 H 0.142 0.858 4 O -0.344 6.344 5 C 0.274 3.726 6 O -0.410 6.410 7 N -0.341 5.341 8 C -0.028 4.028 9 C -0.006 4.006 10 N -0.375 5.375 11 C 0.405 3.595 12 O -0.434 6.434 13 N -0.328 5.328 14 C 0.068 3.932 15 C -0.279 4.279 16 C -0.115 4.115 17 C -0.185 4.185 18 C 0.114 3.886 19 C -0.488 4.488 20 H 0.095 0.905 21 C -0.143 4.143 22 N -0.431 5.431 23 Si 0.736 3.264 24 H -0.195 1.195 25 H -0.204 1.204 26 H -0.186 1.186 27 C -0.224 4.224 28 C -0.029 4.029 29 C -0.040 4.040 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.085 0.915 33 H 0.233 0.767 34 H 0.122 0.878 35 H 0.095 0.905 36 H 0.128 0.872 37 H 0.087 0.913 38 H 0.228 0.772 39 H 0.106 0.894 40 H 0.110 0.890 41 H 0.139 0.861 42 H 0.089 0.911 43 H 0.130 0.870 44 H 0.110 0.890 45 H 0.093 0.907 46 H 0.101 0.899 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.755 -4.465 -20.119 20.622 hybrid contribution -0.674 -0.439 0.437 0.915 sum 0.082 -4.904 -19.682 20.284 Atomic orbital electron populations 1.22661 0.93850 1.04000 1.04346 1.21822 0.94602 0.97309 0.83577 0.85788 1.86600 1.77515 1.29973 1.40335 1.21703 0.79777 0.85883 0.85213 1.90722 1.40452 1.23836 1.86014 1.48084 1.55340 1.24594 1.06113 1.22120 0.99585 0.96078 0.84996 1.21809 0.93323 0.83242 1.02201 1.47226 1.60047 1.26027 1.04191 1.15872 0.78885 0.81777 0.82965 1.90974 1.57300 1.60308 1.34836 1.42720 1.61762 1.19240 1.09037 1.17251 1.01497 0.91715 0.82756 1.20039 1.18368 0.92197 0.97248 1.20469 1.00667 0.97494 0.92833 1.21422 1.04871 0.94317 0.97907 1.17541 0.87596 0.92216 0.91253 1.19580 1.29860 0.99408 0.99936 0.90459 1.25879 0.93635 0.94924 0.99911 1.69794 1.24347 1.16920 1.32071 0.86251 0.78106 0.80860 0.81191 1.19460 1.20353 1.18635 1.21183 1.10640 0.99024 0.91600 1.21989 0.98701 0.95041 0.87158 1.22434 0.95368 0.84443 1.01713 0.90166 0.90165 0.91492 0.76668 0.87780 0.90507 0.87212 0.91347 0.77218 0.89405 0.89019 0.86078 0.91111 0.87047 0.88966 0.90668 0.89926 0.88066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.82 9.10 37.16 0.34 -0.49 16 2 C 0.09 0.59 3.17 -27.88 -0.09 0.50 16 3 H 0.12 0.62 7.46 -51.93 -0.39 0.23 16 4 O -0.54 -4.49 12.99 -55.09 -0.72 -5.21 16 5 C 0.49 4.61 7.11 -10.99 -0.08 4.53 16 6 O -0.53 -7.10 15.73 -14.31 -0.23 -7.32 16 7 N -0.61 -5.14 2.95 -172.51 -0.51 -5.65 16 8 C 0.10 0.94 6.59 -3.60 -0.02 0.92 16 9 C 0.12 1.33 6.60 -3.59 -0.02 1.30 16 10 N -0.64 -7.73 2.95 -178.24 -0.53 -8.26 16 11 C 0.70 12.18 8.13 -86.92 -0.71 11.48 16 12 O -0.56 -12.35 13.26 5.29 0.07 -12.28 16 13 N -0.68 -11.57 5.25 -14.27 -0.07 -11.64 16 14 C 0.16 3.52 6.27 -83.76 -0.53 3.00 16 15 C -0.26 -5.49 9.97 -39.10 -0.39 -5.88 16 16 C -0.10 -2.19 10.01 -39.70 -0.40 -2.59 16 17 C -0.17 -4.30 8.66 -38.84 -0.34 -4.64 16 18 C 0.12 3.19 5.55 -106.85 -0.59 2.60 16 19 C -0.46 -12.55 9.06 -37.75 -0.34 -12.89 16 20 H 0.08 2.10 7.86 -52.48 -0.41 1.69 16 21 C 0.07 1.85 5.27 -17.35 -0.09 1.76 16 22 N -0.80 -20.96 10.81 55.55 0.60 -20.36 16 23 Si 0.91 19.24 29.57 -169.99 -5.03 14.21 16 24 H -0.27 -5.60 7.11 56.52 0.40 -5.19 16 25 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 26 H -0.26 -5.54 7.11 56.52 0.40 -5.13 16 27 C -0.20 -5.20 8.43 -38.69 -0.33 -5.52 16 28 C 0.10 0.73 6.56 -3.62 -0.02 0.71 16 29 C 0.08 0.51 5.18 -3.61 -0.02 0.49 16 30 H 0.08 0.27 5.39 -51.93 -0.28 -0.01 16 31 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.38 2.36 8.79 45.56 0.40 2.76 16 34 H 0.10 1.08 6.99 -51.93 -0.36 0.71 16 35 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.11 1.43 6.99 -51.93 -0.36 1.07 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.39 5.01 6.30 -40.82 -0.26 4.75 16 39 H 0.09 1.60 8.06 -52.49 -0.42 1.18 16 40 H 0.09 1.85 8.06 -52.48 -0.42 1.43 16 41 H 0.12 3.25 6.20 -52.48 -0.33 2.92 16 42 H 0.28 6.59 8.30 -40.82 -0.34 6.26 16 43 H 0.11 2.97 6.30 -52.48 -0.33 2.64 16 44 H 0.09 0.59 5.62 -51.93 -0.29 0.30 16 45 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 46 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 47 H 0.10 0.31 4.58 -51.93 -0.24 0.08 16 LS Contribution 376.23 15.07 5.67 5.67 Total: -1.00 -34.90 376.23 -9.73 -44.62 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: -5.36 Total: 10.94 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: -3.63 Total: -4.72 kcal Atomic # 7 Polarization: -45.41 SS G_CDS: -0.51 Total: -45.92 kcal Atomic # 8 Polarization: -23.94 SS G_CDS: -0.87 Total: -24.81 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.03 Total: 14.21 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.90 -9.73 -44.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413569637.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.313 kcal (2) G-P(sol) polarization free energy of solvation -34.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds