Wall clock time and date at job start Wed Apr 1 2020 05:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47068 * 2 1 4 4 O 1.42900 * 109.46546 * 239.99826 * 2 1 3 5 5 C 1.50698 * 109.47193 * 119.99961 * 2 1 3 6 6 O 1.21289 * 119.99800 * 114.99614 * 5 2 1 7 7 N 1.34773 * 120.00470 * 294.99970 * 5 2 1 8 8 C 1.46958 * 120.59651 * 180.02562 * 7 5 2 9 9 C 1.53368 * 108.63911 * 124.75050 * 8 7 5 10 10 N 1.46972 * 108.63473 * 49.41926 * 9 8 7 11 11 C 1.34773 * 120.59001 * 124.75263 * 10 9 8 12 12 O 1.21582 * 120.00393 * 354.75032 * 11 10 9 13 13 N 1.34782 * 119.99473 * 174.74584 * 11 10 9 14 14 C 1.39962 * 119.99647 * 184.60647 * 13 11 10 15 15 C 1.39291 * 119.94363 * 143.97301 * 14 13 11 16 16 C 1.38482 * 120.42477 * 179.97438 * 15 14 13 17 17 C 1.37677 * 120.32562 * 0.02562 * 16 15 14 18 18 C 1.40743 * 119.88608 * 0.02562 * 17 16 15 19 19 C 1.41400 * 120.21284 * 179.97438 * 18 17 16 20 20 H 1.08004 * 120.00302 * 209.07180 * 19 18 17 21 21 C 1.39929 * 120.00117 * 29.07743 * 19 18 17 22 22 N 1.30830 * 120.00197 * 9.83017 * 21 19 18 23 23 Si 1.86798 * 120.00260 * 189.83447 * 21 19 18 24 24 H 1.48502 * 109.47128 * 94.99064 * 23 21 19 25 25 H 1.48493 * 109.47470 * 214.99437 * 23 21 19 26 26 H 1.48505 * 109.47072 * 334.99386 * 23 21 19 27 27 C 1.38227 * 119.94849 * 323.69546 * 14 13 11 28 28 C 1.46957 * 118.81029 * 304.77803 * 10 9 8 29 29 C 1.46972 * 120.59001 * 359.97366 * 7 5 2 30 30 H 1.09004 * 109.46799 * 299.99899 * 1 2 3 31 31 H 1.08991 * 109.47309 * 59.99667 * 1 2 3 32 32 H 1.09000 * 109.47397 * 180.02562 * 1 2 3 33 33 H 0.96697 * 114.00480 * 300.00260 * 4 2 1 34 34 H 1.08998 * 109.61492 * 5.00318 * 8 7 5 35 35 H 1.09005 * 109.61264 * 244.49067 * 8 7 5 36 36 H 1.08997 * 109.61361 * 169.16499 * 9 8 7 37 37 H 1.09004 * 109.60894 * 289.67998 * 9 8 7 38 38 H 0.97000 * 120.00273 * 4.61251 * 13 11 10 39 39 H 1.08001 * 119.78549 * 359.97438 * 15 14 13 40 40 H 1.08004 * 119.83871 * 180.02562 * 16 15 14 41 41 H 1.08008 * 120.06150 * 179.97438 * 17 16 15 42 42 H 0.96997 * 120.00380 * 179.97438 * 22 21 19 43 43 H 1.08004 * 120.15982 * 0.02562 * 27 14 13 44 44 H 1.09007 * 109.61053 * 174.96666 * 28 10 9 45 45 H 1.08998 * 109.61804 * 295.47918 * 28 10 9 46 46 H 1.09004 * 109.60616 * 115.50636 * 29 7 5 47 47 H 1.08997 * 109.60920 * 354.99585 * 29 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0062 -0.6737 -1.1668 5 6 2.0324 -0.7104 1.2304 6 8 2.6530 -1.7468 1.1214 7 7 1.7920 -0.1942 2.4520 8 6 2.2763 -0.8758 3.6605 9 6 3.1248 0.1104 4.4728 10 7 2.3741 1.3653 4.6200 11 6 2.1338 1.8815 5.8415 12 8 2.4545 1.2619 6.8372 13 7 1.5378 3.0846 5.9593 14 6 1.3752 3.6643 7.2228 15 6 1.4924 5.0438 7.3752 16 6 1.3329 5.6279 8.6206 17 6 1.0569 4.8504 9.7228 18 6 0.9367 3.4550 9.5844 19 6 0.6539 2.6498 10.7118 20 1 1.0055 1.6292 10.7485 21 6 -0.0816 3.1752 11.7800 22 7 -0.6704 4.3373 11.6601 23 14 -0.2227 2.2173 13.3775 24 1 0.8189 2.6834 14.3278 25 1 -1.5667 2.4370 13.9694 26 1 -0.0322 0.7699 13.1053 27 6 1.0928 2.8674 8.3164 28 6 1.8899 2.0469 3.4114 29 6 1.0418 1.0610 2.5992 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.7208 -1.5952 -1.2330 34 1 2.8846 -1.7348 3.3773 35 1 1.4274 -1.2070 4.2589 36 1 3.3320 -0.3096 5.4570 37 1 4.0616 0.3037 3.9501 38 1 1.2216 3.5488 5.1684 39 1 1.7092 5.6619 6.5165 40 1 1.4254 6.6986 8.7279 41 1 0.9337 5.3104 10.6923 42 1 -1.1805 4.7013 12.4004 43 1 0.9977 1.7980 8.1985 44 1 1.2815 2.9059 3.6947 45 1 2.7387 2.3781 2.8131 46 1 0.1048 0.8680 3.1217 47 1 0.8349 1.4811 1.6149 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413569637.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:13 Heat of formation + Delta-G solvation = -89.826861 kcal Electronic energy + Delta-G solvation = -30442.457389 eV Core-core repulsion = 26203.882330 eV Total energy + Delta-G solvation = -4238.575060 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.01690 -41.18245 -39.38397 -38.29758 -37.45795 -36.25626 -35.40949 -34.76829 -32.99651 -31.71004 -31.43142 -30.11510 -28.56825 -27.22094 -25.69252 -24.97278 -23.85619 -22.81557 -22.56100 -21.38433 -20.37422 -19.77152 -19.21878 -18.16308 -17.94524 -17.49231 -17.12363 -16.84528 -16.66414 -16.42444 -16.37834 -16.01803 -15.55047 -15.49408 -15.24122 -15.04625 -14.75550 -14.67081 -14.26986 -13.93044 -13.70065 -13.49682 -13.40338 -13.16746 -12.97312 -12.88844 -12.82608 -12.79795 -12.59603 -12.54443 -12.42685 -12.15992 -11.95520 -11.68622 -11.51935 -11.21209 -10.97087 -10.71858 -10.63304 -10.40499 -9.50294 -9.32551 -8.70437 -8.52152 -6.36592 0.94037 1.04391 1.36500 1.38387 1.41276 1.48787 1.50949 1.88538 2.13007 2.22545 2.78093 2.86267 3.20898 3.38149 3.68891 3.73801 3.81726 3.93759 3.99606 4.06229 4.07861 4.24295 4.39280 4.46423 4.51733 4.60601 4.66328 4.71727 4.77699 4.80877 4.87775 5.05302 5.13246 5.15954 5.16619 5.21041 5.27485 5.35085 5.42332 5.68129 5.84060 6.00674 6.11618 6.16435 6.18815 6.39743 6.56448 6.72600 6.92332 6.96597 6.97974 7.04168 7.54180 8.39260 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.020193 B = 0.002181 C = 0.002080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.296085 B =12834.256194 C =13457.966425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.094 3.906 3 H 0.149 0.851 4 O -0.557 6.557 5 C 0.484 3.516 6 O -0.580 6.580 7 N -0.603 5.603 8 C 0.103 3.897 9 C 0.121 3.879 10 N -0.624 5.624 11 C 0.698 3.302 12 O -0.615 6.615 13 N -0.666 5.666 14 C 0.170 3.830 15 C -0.241 4.241 16 C -0.094 4.094 17 C -0.191 4.191 18 C 0.084 3.916 19 C -0.502 4.502 20 H 0.059 0.941 21 C 0.034 3.966 22 N -0.830 5.830 23 Si 0.982 3.018 24 H -0.261 1.261 25 H -0.262 1.262 26 H -0.267 1.267 27 C -0.229 4.229 28 C 0.087 3.913 29 C 0.084 3.916 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.058 0.942 33 H 0.391 0.609 34 H 0.097 0.903 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.416 0.584 39 H 0.135 0.865 40 H 0.124 0.876 41 H 0.105 0.895 42 H 0.287 0.713 43 H 0.087 0.913 44 H 0.111 0.889 45 H 0.098 0.902 46 H 0.085 0.915 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.624 -2.150 -23.476 23.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.031 3.969 3 H 0.166 0.834 4 O -0.363 6.363 5 C 0.273 3.727 6 O -0.459 6.459 7 N -0.337 5.337 8 C -0.021 4.021 9 C -0.003 4.003 10 N -0.362 5.362 11 C 0.400 3.600 12 O -0.494 6.494 13 N -0.317 5.317 14 C 0.076 3.924 15 C -0.262 4.262 16 C -0.113 4.113 17 C -0.211 4.211 18 C 0.082 3.918 19 C -0.532 4.532 20 H 0.077 0.923 21 C -0.179 4.179 22 N -0.457 5.457 23 Si 0.803 3.197 24 H -0.185 1.185 25 H -0.186 1.186 26 H -0.192 1.192 27 C -0.251 4.251 28 C -0.036 4.036 29 C -0.038 4.038 30 H 0.112 0.888 31 H 0.113 0.887 32 H 0.077 0.923 33 H 0.241 0.759 34 H 0.115 0.885 35 H 0.088 0.912 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.257 0.743 39 H 0.153 0.847 40 H 0.142 0.858 41 H 0.123 0.877 42 H 0.097 0.903 43 H 0.105 0.895 44 H 0.129 0.871 45 H 0.116 0.884 46 H 0.104 0.896 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 0.061 -2.426 -22.896 23.024 hybrid contribution -0.409 -1.043 1.052 1.536 sum -0.348 -3.469 -21.844 22.121 Atomic orbital electron populations 1.22639 0.91853 1.04037 1.05690 1.22040 0.95974 0.97541 0.81300 0.83421 1.86568 1.78107 1.30687 1.40964 1.22384 0.78849 0.85372 0.86077 1.90704 1.42583 1.25983 1.86656 1.48148 1.55065 1.25206 1.05310 1.21881 0.99043 0.95621 0.85510 1.21800 0.94079 0.83186 1.01256 1.47211 1.59020 1.25963 1.03980 1.16080 0.78564 0.81490 0.83817 1.90955 1.59341 1.61671 1.37475 1.42420 1.61742 1.19312 1.08179 1.17278 0.99294 0.92051 0.83751 1.20486 1.15537 0.92052 0.98140 1.20851 0.99002 0.98974 0.92476 1.21367 1.07153 0.94070 0.98552 1.17868 0.88660 0.93268 0.92021 1.19705 1.32359 0.99118 1.02056 0.92278 1.26641 0.92603 0.95969 1.02673 1.69832 1.24589 1.17999 1.33312 0.85207 0.78876 0.78876 0.76785 1.18514 1.18648 1.19167 1.21123 1.12841 0.98313 0.92777 1.22422 1.00129 0.95645 0.85382 1.22675 0.94588 0.82922 1.03665 0.88777 0.88719 0.92252 0.75942 0.88486 0.91158 0.89767 0.90084 0.74315 0.84696 0.85789 0.87746 0.90253 0.89487 0.87094 0.88428 0.89639 0.84075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.92 9.10 71.98 0.66 -0.27 16 2 C 0.09 0.93 3.17 29.85 0.09 1.03 16 3 H 0.15 0.76 7.46 -2.39 -0.02 0.74 16 4 O -0.56 -8.17 12.99 -129.99 -1.69 -9.85 16 5 C 0.48 8.26 7.11 87.66 0.62 8.88 16 6 O -0.58 -15.20 15.73 15.93 0.25 -14.95 16 7 N -0.60 -8.93 2.95 -818.09 -2.41 -11.34 16 8 C 0.10 2.02 6.59 86.42 0.57 2.59 16 9 C 0.12 2.69 6.60 86.41 0.57 3.26 16 10 N -0.62 -14.21 2.95 -836.10 -2.46 -16.67 16 11 C 0.70 23.90 8.13 179.05 1.46 25.36 16 12 O -0.62 -28.41 13.26 -3.97 -0.05 -28.46 16 13 N -0.67 -21.34 5.25 -317.32 -1.66 -23.00 16 14 C 0.17 7.34 6.27 38.09 0.24 7.58 16 15 C -0.24 -9.58 9.97 22.58 0.23 -9.35 16 16 C -0.09 -4.17 10.01 22.20 0.22 -3.95 16 17 C -0.19 -10.20 8.66 22.75 0.20 -10.00 16 18 C 0.08 4.85 5.55 -21.31 -0.12 4.73 16 19 C -0.50 -29.32 9.06 23.46 0.21 -29.11 16 20 H 0.06 3.50 7.86 -2.91 -0.02 3.47 16 21 C 0.03 1.83 5.27 85.25 0.45 2.28 16 22 N -0.83 -44.50 10.81 21.82 0.24 -44.27 16 23 Si 0.98 40.67 29.57 68.60 2.03 42.70 16 24 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 25 H -0.26 -10.09 7.11 99.48 0.71 -9.39 16 26 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 27 C -0.23 -12.21 8.43 22.85 0.19 -12.02 16 28 C 0.09 0.98 6.56 86.40 0.57 1.55 16 29 C 0.08 0.68 5.18 86.40 0.45 1.13 16 30 H 0.09 0.21 5.39 -2.38 -0.01 0.19 16 31 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16 32 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.39 4.38 8.79 -74.06 -0.65 3.73 16 34 H 0.10 2.07 6.99 -2.39 -0.02 2.05 16 35 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 36 H 0.08 2.35 6.99 -2.39 -0.02 2.33 16 37 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 38 H 0.42 8.96 6.30 -92.71 -0.58 8.38 16 39 H 0.14 4.13 8.06 -2.91 -0.02 4.10 16 40 H 0.12 4.62 8.06 -2.91 -0.02 4.60 16 41 H 0.10 5.82 6.20 -2.91 -0.02 5.80 16 42 H 0.29 13.82 8.30 -92.71 -0.77 13.05 16 43 H 0.09 4.99 6.30 -2.91 -0.02 4.97 16 44 H 0.11 0.86 5.62 -2.38 -0.01 0.85 16 45 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 46 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 47 H 0.14 0.08 4.58 -2.39 -0.01 0.07 16 Total: -1.00 -82.76 376.23 0.64 -82.12 By element: Atomic # 1 Polarization: 30.25 SS G_CDS: -0.19 Total: 30.05 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: 6.60 Total: -6.32 kcal Atomic # 7 Polarization: -88.98 SS G_CDS: -6.30 Total: -95.28 kcal Atomic # 8 Polarization: -51.77 SS G_CDS: -1.49 Total: -53.26 kcal Atomic # 14 Polarization: 40.67 SS G_CDS: 2.03 Total: 42.70 kcal Total: -82.76 0.64 -82.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413569637.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.710 kcal (2) G-P(sol) polarization free energy of solvation -82.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds