Wall clock time and date at job start Wed Apr 1 2020 04:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47426 * 2 1 4 4 C 1.50704 * 109.46970 * 120.00141 * 2 1 3 5 5 H 1.08007 * 119.99868 * 120.00235 * 4 2 1 6 6 C 1.37876 * 119.99901 * 300.27212 * 4 2 1 7 7 N 1.31516 * 119.99896 * 359.72535 * 6 4 2 8 8 Si 1.86801 * 119.99853 * 179.72973 * 6 4 2 9 9 H 1.48501 * 109.47199 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47501 * 119.99947 * 8 6 4 11 11 H 1.48504 * 109.46684 * 239.99746 * 8 6 4 12 12 N 1.46497 * 109.47032 * 239.99877 * 2 1 3 13 13 C 1.34776 * 120.00047 * 84.99964 * 12 2 1 14 14 O 1.21594 * 119.99991 * 0.02562 * 13 12 2 15 15 N 1.34773 * 120.00195 * 179.97438 * 13 12 2 16 16 C 1.40147 * 120.00189 * 174.81820 * 15 13 12 17 17 C 1.38857 * 119.99327 * 147.15210 * 16 15 13 18 18 C 1.38220 * 120.18916 * 179.88480 * 17 16 15 19 19 C 1.38470 * 120.01875 * 359.97348 * 18 17 16 20 20 C 1.39391 * 119.90601 * 0.21107 * 19 18 17 21 21 C 1.38492 * 120.06413 * 359.46998 * 20 19 18 22 22 N 1.40135 * 119.36682 * 179.65575 * 20 19 18 23 23 C 1.35167 * 119.33506 * 48.78706 * 22 20 19 24 24 O 1.21297 * 120.16648 * 183.54954 * 23 22 20 25 25 C 1.50685 * 119.67180 * 3.57307 * 23 22 20 26 26 C 1.52997 * 109.37489 * 45.75499 * 25 23 22 27 27 C 1.53003 * 109.37029 * 165.51303 * 25 23 22 28 28 C 1.52722 * 110.07632 * 285.56984 * 25 23 22 29 29 O 1.36006 * 120.40423 * 180.58364 * 19 18 17 30 30 H 1.09003 * 109.46779 * 300.00280 * 1 2 3 31 31 H 1.08999 * 109.46983 * 59.99507 * 1 2 3 32 32 H 1.09001 * 109.47240 * 180.02562 * 1 2 3 33 33 H 0.97000 * 119.99527 * 180.02562 * 7 6 4 34 34 H 0.96999 * 120.00264 * 265.00397 * 12 2 1 35 35 H 0.96999 * 120.00487 * 354.81947 * 15 13 12 36 36 H 1.08000 * 119.89976 * 359.90232 * 17 16 15 37 37 H 1.08000 * 119.99493 * 179.97438 * 18 17 16 38 38 H 1.08003 * 120.09735 * 180.41429 * 21 20 19 39 39 H 0.97003 * 120.33468 * 228.80587 * 22 20 19 40 40 H 1.08997 * 109.46810 * 42.11657 * 26 25 23 41 41 H 1.08995 * 109.47266 * 162.11886 * 26 25 23 42 42 H 1.08999 * 109.46996 * 282.11969 * 26 25 23 43 43 H 1.08994 * 109.47466 * 59.99542 * 27 25 23 44 44 H 1.08999 * 109.46865 * 180.02562 * 27 25 23 45 45 H 1.09004 * 109.46620 * 299.99128 * 27 25 23 46 46 H 1.09004 * 109.30675 * 164.24520 * 28 25 23 47 47 H 1.09008 * 109.30417 * 283.63900 * 28 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6945 -0.2427 2.4827 7 7 0.9385 0.8266 2.6034 8 14 2.3109 -1.1278 4.0079 9 1 3.1365 -2.2941 3.6037 10 1 3.1332 -0.1971 4.8220 11 1 1.1525 -1.5961 4.8105 12 7 2.0183 -0.6906 -1.1961 13 6 2.1470 -0.0183 -2.3571 14 8 1.8582 1.1616 -2.4116 15 7 2.5967 -0.6535 -3.4574 16 6 2.6280 0.0149 -4.6889 17 6 3.6250 -0.2750 -5.6109 18 6 3.6583 0.3800 -6.8275 19 6 2.6956 1.3281 -7.1305 20 6 1.6960 1.6237 -6.2051 21 6 1.6589 0.9625 -4.9888 22 7 0.7316 2.5903 -6.5206 23 6 0.0998 2.5306 -7.7140 24 8 -0.6903 3.3953 -8.0293 25 6 0.3815 1.3843 -8.6506 26 6 0.3587 0.0708 -7.8664 27 6 -0.6920 1.3436 -9.7401 28 6 1.7522 1.5627 -9.3002 29 8 2.7140 1.9688 -8.3300 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 0.7012 1.1559 3.4844 34 1 2.2489 -1.6318 -1.1526 35 1 2.8987 -1.5733 -3.3971 36 1 4.3763 -1.0147 -5.3767 37 1 4.4354 0.1524 -7.5422 38 1 0.8807 1.1864 -4.2742 39 1 0.5198 3.2954 -5.8889 40 1 -0.4764 0.0803 -7.1661 41 1 0.2434 -0.7635 -8.5583 42 1 1.2931 -0.0401 -7.3162 43 1 -0.6801 2.2805 -10.2970 44 1 -0.4900 0.5146 -10.4183 45 1 -1.6709 1.2064 -9.2806 46 1 2.0657 0.6184 -9.7452 47 1 1.6852 2.3208 -10.0806 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001467173789.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:46 Heat of formation + Delta-G solvation = -59.051759 kcal Electronic energy + Delta-G solvation = -31131.524466 eV Core-core repulsion = 26894.283915 eV Total energy + Delta-G solvation = -4237.240551 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.03258 -40.11618 -38.88537 -37.74042 -35.66649 -35.14137 -34.83318 -33.78320 -32.45668 -30.17484 -29.48897 -28.33596 -27.49298 -26.32189 -25.32264 -24.22542 -23.35072 -22.40742 -21.15503 -20.00808 -19.93490 -18.49862 -18.18637 -17.64586 -16.91000 -16.60859 -16.11766 -16.01982 -15.78106 -15.08468 -15.03231 -14.88194 -14.56236 -14.29206 -14.06271 -13.73108 -13.58020 -13.42511 -13.07127 -12.90140 -12.80913 -12.52808 -12.47881 -12.38496 -11.86078 -11.78990 -11.49919 -11.25316 -11.14613 -11.04442 -10.85370 -10.73883 -10.38894 -10.30573 -10.20987 -10.06227 -9.81902 -9.60269 -9.12337 -8.63660 -8.57262 -8.15006 -7.77973 -6.19281 -4.28821 0.87179 1.12184 2.28977 2.82777 3.04625 3.12161 3.19417 3.27813 3.29984 3.53704 3.83904 3.98030 4.25495 4.26572 4.31219 4.66536 4.71049 4.82365 4.95922 5.04875 5.10279 5.13791 5.16634 5.26472 5.31707 5.39846 5.45977 5.51550 5.67600 5.69100 5.81054 5.89603 6.08398 6.14352 6.24886 6.57535 6.70527 6.81698 6.88018 6.90692 7.00576 7.11931 7.29260 7.33934 7.54717 7.73151 7.86945 7.89365 8.07528 8.62068 8.74394 9.09423 9.39289 10.86794 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.022378 B = 0.002344 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.943758 B =11944.053281 C =12598.840931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.280 3.720 3 H 0.050 0.950 4 C -0.535 4.535 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.882 5.882 8 Si 0.903 3.097 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.716 5.716 13 C 0.691 3.309 14 O -0.580 6.580 15 N -0.695 5.695 16 C 0.204 3.796 17 C -0.151 4.151 18 C -0.091 4.091 19 C 0.050 3.950 20 C 0.141 3.859 21 C -0.127 4.127 22 N -0.665 5.665 23 C 0.537 3.463 24 O -0.525 6.525 25 C -0.120 4.120 26 C -0.168 4.168 27 C -0.127 4.127 28 C 0.078 3.922 29 O -0.321 6.321 30 H 0.091 0.909 31 H 0.014 0.986 32 H 0.026 0.974 33 H 0.265 0.735 34 H 0.387 0.613 35 H 0.406 0.594 36 H 0.135 0.865 37 H 0.138 0.862 38 H 0.151 0.849 39 H 0.416 0.584 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.084 0.916 43 H 0.069 0.931 44 H 0.067 0.933 45 H 0.066 0.934 46 H 0.071 0.929 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.878 -5.805 -23.270 24.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.178 3.822 3 H 0.068 0.932 4 C -0.573 4.573 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.519 5.519 8 Si 0.731 3.269 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.367 5.367 13 C 0.392 3.608 14 O -0.457 6.457 15 N -0.342 5.342 16 C 0.106 3.894 17 C -0.173 4.173 18 C -0.111 4.111 19 C 0.003 3.997 20 C 0.046 3.954 21 C -0.150 4.150 22 N -0.314 5.314 23 C 0.325 3.675 24 O -0.400 6.400 25 C -0.124 4.124 26 C -0.225 4.225 27 C -0.185 4.185 28 C 0.003 3.997 29 O -0.238 6.238 30 H 0.110 0.890 31 H 0.034 0.966 32 H 0.045 0.955 33 H 0.075 0.925 34 H 0.220 0.780 35 H 0.241 0.759 36 H 0.153 0.847 37 H 0.156 0.844 38 H 0.169 0.831 39 H 0.256 0.744 40 H 0.084 0.916 41 H 0.089 0.911 42 H 0.102 0.898 43 H 0.088 0.912 44 H 0.086 0.914 45 H 0.085 0.915 46 H 0.090 0.910 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 2.151 -4.102 -23.377 23.832 hybrid contribution 0.317 -1.187 1.415 1.874 sum 2.468 -5.289 -21.963 22.725 Atomic orbital electron populations 1.22109 0.98445 0.99154 1.00992 1.18717 0.90876 0.93799 0.78806 0.93198 1.21227 1.32522 1.13399 0.90188 0.91984 1.24886 0.94762 0.94967 0.99095 1.69908 1.35697 1.22421 1.23912 0.86371 0.78591 0.79504 0.82483 1.19747 1.20830 1.20843 1.45900 1.68135 1.13320 1.09306 1.16181 0.78857 0.85403 0.80404 1.90902 1.56650 1.14022 1.84126 1.42950 1.68777 1.16438 1.06064 1.17330 0.92939 0.94025 0.85088 1.20759 0.98323 1.03810 0.94415 1.20813 0.99041 0.93788 0.97436 1.18433 0.96241 0.97886 0.87112 1.17805 0.89955 0.92680 0.94947 1.21055 1.00174 0.97372 0.96371 1.43595 1.39155 1.29546 1.19100 1.20513 0.79279 0.86291 0.81458 1.90737 1.34870 1.39991 1.74369 1.21466 0.98823 0.95222 0.96848 1.22483 1.04663 0.94599 1.00738 1.21659 0.97336 1.02788 0.96672 1.22930 0.84504 1.02066 0.90245 1.86085 1.55663 1.60172 1.21836 0.89000 0.96640 0.95453 0.92525 0.78047 0.75897 0.84718 0.84387 0.83150 0.74443 0.91615 0.91110 0.89754 0.91223 0.91402 0.91512 0.91047 0.87707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 9.26 37.16 0.34 -3.21 16 2 C 0.28 6.80 2.56 -69.08 -0.18 6.63 16 3 H 0.05 1.42 7.58 -51.93 -0.39 1.02 16 4 C -0.53 -13.62 8.73 -34.44 -0.30 -13.92 16 5 H 0.06 1.50 7.74 -52.48 -0.41 1.10 16 6 C 0.07 1.74 5.30 -17.82 -0.09 1.64 16 7 N -0.88 -24.27 11.31 55.43 0.63 -23.64 16 8 Si 0.90 20.09 29.54 -169.99 -5.02 15.06 16 9 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 10 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 11 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 12 N -0.72 -13.79 5.07 -59.82 -0.30 -14.09 16 13 C 0.69 12.80 8.27 -86.92 -0.72 12.08 16 14 O -0.58 -13.01 13.67 5.28 0.07 -12.93 16 15 N -0.69 -9.17 5.36 -14.19 -0.08 -9.25 16 16 C 0.20 2.59 6.29 -83.61 -0.53 2.07 16 17 C -0.15 -1.47 9.95 -39.36 -0.39 -1.86 16 18 C -0.09 -0.87 9.55 -39.50 -0.38 -1.24 16 19 C 0.05 0.57 4.03 -39.07 -0.16 0.41 16 20 C 0.14 1.80 3.92 -83.54 -0.33 1.48 16 21 C -0.13 -1.79 8.34 -39.27 -0.33 -2.12 16 22 N -0.67 -8.71 5.32 -9.69 -0.05 -8.76 16 23 C 0.54 7.09 6.42 -10.82 -0.07 7.02 16 24 O -0.52 -8.38 16.85 5.54 0.09 -8.29 16 25 C -0.12 -1.17 0.73 -155.81 -0.11 -1.28 16 26 C -0.17 -1.52 7.49 37.16 0.28 -1.24 16 27 C -0.13 -1.03 7.70 37.16 0.29 -0.75 16 28 C 0.08 0.67 5.85 37.01 0.22 0.88 16 29 O -0.32 -3.65 9.91 -19.76 -0.20 -3.84 16 30 H 0.09 2.42 6.06 -51.93 -0.31 2.10 16 31 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.26 6.90 8.31 -40.82 -0.34 6.57 16 34 H 0.39 6.24 8.56 -40.82 -0.35 5.89 16 35 H 0.41 3.85 8.83 -40.82 -0.36 3.49 16 36 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 37 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 38 H 0.15 2.50 6.40 -52.48 -0.34 2.17 16 39 H 0.42 5.34 8.94 -40.82 -0.36 4.98 16 40 H 0.06 0.67 8.00 -51.93 -0.42 0.25 16 41 H 0.07 0.49 8.01 -51.93 -0.42 0.07 16 42 H 0.08 0.82 3.53 -51.93 -0.18 0.64 16 43 H 0.07 0.60 7.94 -51.93 -0.41 0.18 16 44 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.07 0.45 8.03 -51.93 -0.42 0.03 16 47 H 0.10 0.79 8.02 -51.92 -0.42 0.37 16 LS Contribution 377.36 15.07 5.69 5.69 Total: -1.00 -32.50 377.36 -8.08 -40.58 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: -6.46 Total: 12.90 kcal Atomic # 6 Polarization: 9.03 SS G_CDS: -2.46 Total: 6.57 kcal Atomic # 7 Polarization: -55.94 SS G_CDS: 0.20 Total: -55.74 kcal Atomic # 8 Polarization: -25.03 SS G_CDS: -0.03 Total: -25.06 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.50 -8.08 -40.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001467173789.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.471 kcal (2) G-P(sol) polarization free energy of solvation -32.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds