Wall clock time and date at job start Wed Apr 1 2020 04:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47380 * 2 1 4 4 C 1.53003 * 109.47243 * 119.99246 * 2 1 3 5 5 N 1.46898 * 109.47191 * 174.99793 * 4 2 1 6 6 C 1.46909 * 110.99931 * 180.02562 * 5 4 2 7 7 C 1.50700 * 109.46975 * 180.02562 * 6 5 4 8 8 O 1.21290 * 119.99848 * 0.02562 * 7 6 5 9 9 N 1.34772 * 119.99583 * 179.97438 * 7 6 5 10 10 C 1.37103 * 119.99651 * 179.97438 * 9 7 6 11 11 H 1.07997 * 120.00035 * 0.02562 * 10 9 7 12 12 C 1.38951 * 119.99899 * 179.97438 * 10 9 7 13 13 N 1.31415 * 120.00168 * 179.97438 * 12 10 9 14 14 Si 1.86796 * 119.99886 * 0.02562 * 12 10 9 15 15 H 1.48501 * 109.47561 * 89.99552 * 14 12 10 16 16 H 1.48507 * 109.47099 * 209.99531 * 14 12 10 17 17 H 1.48498 * 109.47384 * 329.99266 * 14 12 10 18 18 N 1.46494 * 109.47305 * 239.99352 * 2 1 3 19 19 C 1.34784 * 119.99635 * 85.00093 * 18 2 1 20 20 O 1.21279 * 119.99925 * 359.97438 * 19 18 2 21 21 C 1.50700 * 119.99961 * 180.02562 * 19 18 2 22 22 H 1.09001 * 110.82702 * 303.71064 * 21 19 18 23 23 C 1.54704 * 110.94167 * 67.45587 * 21 19 18 24 24 O 1.43773 * 102.78704 * 143.44453 * 23 21 19 25 25 C 1.36129 * 109.23805 * 332.26060 * 24 23 21 26 26 C 1.39284 * 129.88571 * 198.39157 * 25 24 23 27 27 C 1.37933 * 120.24172 * 180.96939 * 26 25 24 28 28 C 1.38283 * 120.35035 * 0.04832 * 27 26 25 29 29 C 1.38350 * 119.77078 * 359.79589 * 28 27 26 30 30 C 1.37744 * 119.97286 * 0.02562 * 29 28 27 31 31 H 1.09000 * 109.46920 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.46997 * 300.00209 * 1 2 3 33 33 H 1.08991 * 109.46933 * 60.00690 * 1 2 3 34 34 H 1.09000 * 109.47461 * 295.00683 * 4 2 1 35 35 H 1.09011 * 109.46575 * 55.00317 * 4 2 1 36 36 H 1.00897 * 111.00192 * 303.95862 * 5 4 2 37 37 H 1.08997 * 109.46848 * 300.00742 * 6 5 4 38 38 H 1.08999 * 109.46466 * 60.00811 * 6 5 4 39 39 H 0.96996 * 120.00373 * 0.02562 * 9 7 6 40 40 H 0.96989 * 120.00167 * 180.02562 * 13 12 10 41 41 H 0.96995 * 120.00292 * 265.27526 * 18 2 1 42 42 H 1.08999 * 110.75244 * 261.77457 * 23 21 19 43 43 H 1.09006 * 110.74475 * 25.11866 * 23 21 19 44 44 H 1.08003 * 119.88222 * 0.99806 * 26 25 24 45 45 H 1.08005 * 119.82677 * 180.02562 * 27 26 25 46 46 H 1.08002 * 120.11642 * 179.83855 * 28 27 26 47 47 H 1.07999 * 120.01560 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7211 1.2494 5 7 3.5041 -0.8266 1.1905 6 6 4.0303 -1.5157 2.3764 7 6 5.5317 -1.6042 2.2809 8 8 6.1067 -1.1386 1.3199 9 7 6.2354 -2.1998 3.2640 10 6 7.6013 -2.2807 3.1769 11 1 8.1133 -1.8669 2.3208 12 6 8.3269 -2.8943 4.1907 13 7 9.6360 -2.9724 4.1071 14 14 7.4413 -3.6095 5.6718 15 1 7.0921 -5.0275 5.4027 16 1 8.3270 -3.5350 6.8616 17 1 6.2010 -2.8344 5.9288 18 7 2.0184 -0.6907 -1.1960 19 6 2.1471 -0.0184 -2.3571 20 8 1.8582 1.1582 -2.4117 21 6 2.6489 -0.7290 -3.5876 22 1 3.6204 -1.1869 -3.4016 23 6 1.6249 -1.7814 -4.0746 24 8 1.7372 -1.6963 -5.5055 25 6 2.1378 -0.4418 -5.8501 26 6 2.0581 0.2163 -7.0751 27 6 2.5503 1.4979 -7.2085 28 6 3.1279 2.1405 -6.1289 29 6 3.2080 1.4951 -4.9078 30 6 2.7137 0.2166 -4.7714 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5137 -0.8900 34 1 1.7516 -0.1582 2.1370 35 1 1.6054 -1.7197 1.2953 36 1 3.7996 -1.2883 0.3435 37 1 3.7557 -0.9586 3.2721 38 1 3.6095 -2.5197 2.4296 39 1 5.7756 -2.5718 4.0328 40 1 10.1425 -3.4010 4.8145 41 1 2.2453 -1.6328 -1.1534 42 1 1.8979 -2.7768 -3.7243 43 1 0.6179 -1.5194 -3.7500 44 1 1.6088 -0.2785 -7.9235 45 1 2.4847 2.0020 -8.1614 46 1 3.5144 3.1430 -6.2383 47 1 3.6579 1.9934 -4.0618 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498208203.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:42 Heat of formation + Delta-G solvation = -65.035604 kcal Electronic energy + Delta-G solvation = -29726.411186 eV Core-core repulsion = 25488.911156 eV Total energy + Delta-G solvation = -4237.500030 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.70322 -39.71868 -38.53716 -37.63233 -36.87606 -34.40861 -33.78834 -33.19354 -31.71430 -31.24961 -30.24862 -29.38062 -27.84541 -25.17176 -24.55486 -23.30914 -22.98361 -22.35651 -21.15423 -20.54627 -19.44230 -18.44724 -17.84284 -17.70935 -17.01783 -16.37605 -16.25761 -15.86936 -15.60689 -15.46043 -15.10761 -14.90013 -14.49979 -14.23343 -14.09521 -13.80297 -13.60147 -13.39635 -13.25845 -13.24189 -13.02524 -12.77792 -12.70606 -12.33383 -12.28907 -12.02607 -11.93634 -11.85485 -11.70657 -11.25628 -11.22937 -11.12637 -11.02076 -10.63767 -10.04282 -10.01779 -9.62053 -9.34181 -9.09487 -8.66396 -8.41030 -8.27819 -8.21498 -6.35140 -3.86945 1.05289 1.20067 2.35571 2.81005 2.94784 2.98754 3.02444 3.11549 3.55278 3.67886 3.90537 3.92599 4.06235 4.19869 4.41697 4.59876 4.66713 4.74075 4.78795 4.89187 4.97511 4.99596 5.07924 5.17111 5.17368 5.19250 5.24875 5.28425 5.42609 5.44049 5.46784 5.54469 5.71591 5.78601 5.83041 5.85715 5.95678 6.08616 6.21006 6.25790 6.31644 6.35997 6.91133 6.94206 7.21256 7.42555 7.53474 7.97642 8.09776 8.54921 8.90471 9.37645 9.77209 10.77892 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014539 B = 0.002097 C = 0.001957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.454001 B =13349.816159 C =14307.761200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.144 3.856 3 H 0.099 0.901 4 C 0.051 3.949 5 N -0.667 5.667 6 C 0.047 3.953 7 C 0.448 3.552 8 O -0.564 6.564 9 N -0.589 5.589 10 C -0.306 4.306 11 H 0.120 0.880 12 C 0.041 3.959 13 N -0.880 5.880 14 Si 0.880 3.120 15 H -0.271 1.271 16 H -0.276 1.276 17 H -0.269 1.269 18 N -0.722 5.722 19 C 0.531 3.469 20 O -0.522 6.522 21 C -0.105 4.105 22 H 0.127 0.873 23 C 0.066 3.934 24 O -0.300 6.300 25 C 0.104 3.896 26 C -0.143 4.143 27 C -0.083 4.083 28 C -0.150 4.150 29 C -0.039 4.039 30 C -0.151 4.151 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.088 0.912 35 H 0.033 0.967 36 H 0.348 0.652 37 H 0.089 0.911 38 H 0.045 0.955 39 H 0.370 0.630 40 H 0.274 0.726 41 H 0.398 0.602 42 H 0.116 0.884 43 H 0.080 0.920 44 H 0.127 0.873 45 H 0.131 0.869 46 H 0.129 0.871 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.683 2.481 -14.525 26.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.040 3.960 3 H 0.117 0.883 4 C -0.080 4.080 5 N -0.300 5.300 6 C -0.085 4.085 7 C 0.233 3.767 8 O -0.446 6.446 9 N -0.229 5.229 10 C -0.435 4.435 11 H 0.137 0.863 12 C -0.162 4.162 13 N -0.520 5.520 14 Si 0.707 3.293 15 H -0.197 1.197 16 H -0.201 1.201 17 H -0.195 1.195 18 N -0.374 5.374 19 C 0.315 3.685 20 O -0.397 6.397 21 C -0.126 4.126 22 H 0.144 0.856 23 C -0.009 4.009 24 O -0.214 6.214 25 C 0.059 3.941 26 C -0.162 4.162 27 C -0.101 4.101 28 C -0.169 4.169 29 C -0.057 4.057 30 C -0.152 4.152 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.106 0.894 35 H 0.051 0.949 36 H 0.169 0.831 37 H 0.107 0.893 38 H 0.063 0.937 39 H 0.203 0.797 40 H 0.084 0.916 41 H 0.232 0.768 42 H 0.134 0.866 43 H 0.098 0.902 44 H 0.145 0.855 45 H 0.148 0.852 46 H 0.146 0.854 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -21.228 4.023 -14.978 26.290 hybrid contribution -0.559 -2.044 1.508 2.600 sum -21.787 1.980 -13.471 25.692 Atomic orbital electron populations 1.22151 0.94939 1.02096 1.02871 1.21059 0.93444 0.98583 0.82925 0.88258 1.22315 0.88681 0.99038 0.97919 1.60002 1.07616 1.57489 1.04889 1.21730 0.94949 0.97089 0.94771 1.19686 0.87979 0.83909 0.85079 1.90573 1.70992 1.50064 1.32983 1.42205 1.07896 1.52899 1.19872 1.19430 0.79550 1.36024 1.08456 0.86280 1.25053 0.95451 0.97660 0.98027 1.69619 1.05076 1.43156 1.34127 0.86663 0.79679 0.79900 0.83082 1.19658 1.20128 1.19489 1.46018 1.67778 1.13813 1.09756 1.19960 0.77527 0.87250 0.83713 1.90720 1.48851 1.15500 1.84613 1.21599 1.02188 0.96036 0.92759 0.85574 1.23774 0.98741 0.99872 0.78556 1.86842 1.84297 1.26925 1.23327 1.19536 0.95013 0.84455 0.95099 1.20201 1.05586 0.95040 0.95346 1.20891 0.96673 0.93549 0.99017 1.21083 1.02490 1.00680 0.92609 1.20405 0.95730 0.92085 0.97516 1.20160 1.04895 0.96525 0.93660 0.92509 0.91287 0.91889 0.89359 0.94895 0.83150 0.89310 0.93708 0.79692 0.91564 0.76841 0.86630 0.90161 0.85481 0.85161 0.85351 0.85319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.29 9.48 37.16 0.35 -0.94 16 2 C 0.14 1.41 2.88 -67.93 -0.20 1.22 16 3 H 0.10 1.25 7.58 -51.93 -0.39 0.86 16 4 C 0.05 0.50 5.30 -3.82 -0.02 0.47 16 5 N -0.67 -9.40 6.12 -115.05 -0.70 -10.10 16 6 C 0.05 0.73 6.17 -4.97 -0.03 0.69 16 7 C 0.45 9.83 7.82 -10.99 -0.09 9.75 16 8 O -0.56 -14.83 15.78 5.55 0.09 -14.75 16 9 N -0.59 -13.68 5.09 -10.96 -0.06 -13.73 16 10 C -0.31 -8.53 10.16 -14.93 -0.15 -8.68 16 11 H 0.12 3.82 7.39 -52.49 -0.39 3.43 16 12 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 13 N -0.88 -25.45 13.96 55.50 0.77 -24.68 16 14 Si 0.88 18.98 27.74 -169.99 -4.71 14.27 16 15 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 16 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 17 H -0.27 -5.27 6.52 56.52 0.37 -4.91 16 18 N -0.72 -6.67 4.35 -53.81 -0.23 -6.90 16 19 C 0.53 6.05 7.02 -10.98 -0.08 5.98 16 20 O -0.52 -7.79 14.85 5.56 0.08 -7.71 16 21 C -0.10 -1.04 3.52 -91.56 -0.32 -1.36 16 22 H 0.13 1.13 8.14 -51.93 -0.42 0.71 16 23 C 0.07 0.53 7.54 38.05 0.29 0.82 16 24 O -0.30 -3.25 11.10 -20.15 -0.22 -3.48 16 25 C 0.10 1.19 7.04 -38.95 -0.27 0.92 16 26 C -0.14 -1.42 10.06 -39.30 -0.40 -1.81 16 27 C -0.08 -0.74 10.02 -39.68 -0.40 -1.14 16 28 C -0.15 -1.48 10.07 -39.52 -0.40 -1.88 16 29 C -0.04 -0.47 9.08 -39.72 -0.36 -0.83 16 30 C -0.15 -1.80 5.39 -104.10 -0.56 -2.36 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.03 0.27 8.14 -51.92 -0.42 -0.15 16 36 H 0.35 5.00 7.29 -39.29 -0.29 4.72 16 37 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 38 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.37 7.49 5.76 -40.82 -0.24 7.25 16 40 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 41 H 0.40 2.78 8.17 -40.82 -0.33 2.44 16 42 H 0.12 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.08 0.60 7.91 -51.93 -0.41 0.19 16 44 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 45 H 0.13 0.78 8.06 -52.48 -0.42 0.36 16 46 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 47 H 0.13 1.58 7.81 -52.49 -0.41 1.17 16 LS Contribution 394.42 15.07 5.94 5.94 Total: -1.00 -35.81 394.42 -8.47 -44.28 By element: Atomic # 1 Polarization: 21.68 SS G_CDS: -6.70 Total: 14.98 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: -2.73 Total: 1.87 kcal Atomic # 7 Polarization: -55.20 SS G_CDS: -0.22 Total: -55.42 kcal Atomic # 8 Polarization: -25.88 SS G_CDS: -0.05 Total: -25.93 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -4.71 Total: 14.27 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.81 -8.47 -44.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498208203.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.755 kcal (2) G-P(sol) polarization free energy of solvation -35.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds