Wall clock time and date at job start Wed Apr 1 2020 04:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47380 * 2 1 4 4 C 1.53003 * 109.47243 * 119.99246 * 2 1 3 5 5 N 1.46898 * 109.47191 * 174.99793 * 4 2 1 6 6 C 1.46909 * 110.99931 * 180.02562 * 5 4 2 7 7 C 1.50700 * 109.46975 * 180.02562 * 6 5 4 8 8 O 1.21290 * 119.99848 * 0.02562 * 7 6 5 9 9 N 1.34772 * 119.99583 * 179.97438 * 7 6 5 10 10 C 1.37103 * 119.99651 * 179.97438 * 9 7 6 11 11 H 1.07997 * 120.00035 * 0.02562 * 10 9 7 12 12 C 1.38951 * 119.99899 * 179.97438 * 10 9 7 13 13 N 1.31415 * 120.00168 * 179.97438 * 12 10 9 14 14 Si 1.86796 * 119.99886 * 0.02562 * 12 10 9 15 15 H 1.48501 * 109.47561 * 89.99552 * 14 12 10 16 16 H 1.48507 * 109.47099 * 209.99531 * 14 12 10 17 17 H 1.48498 * 109.47384 * 329.99266 * 14 12 10 18 18 N 1.46494 * 109.47305 * 239.99352 * 2 1 3 19 19 C 1.34784 * 119.99635 * 85.00093 * 18 2 1 20 20 O 1.21279 * 119.99925 * 359.97438 * 19 18 2 21 21 C 1.50700 * 119.99961 * 180.02562 * 19 18 2 22 22 H 1.09001 * 110.82702 * 303.71064 * 21 19 18 23 23 C 1.54704 * 110.94167 * 67.45587 * 21 19 18 24 24 O 1.43773 * 102.78704 * 143.44453 * 23 21 19 25 25 C 1.36129 * 109.23805 * 332.26060 * 24 23 21 26 26 C 1.39284 * 129.88571 * 198.39157 * 25 24 23 27 27 C 1.37933 * 120.24172 * 180.96939 * 26 25 24 28 28 C 1.38283 * 120.35035 * 0.04832 * 27 26 25 29 29 C 1.38350 * 119.77078 * 359.79589 * 28 27 26 30 30 C 1.37744 * 119.97286 * 0.02562 * 29 28 27 31 31 H 1.09000 * 109.46920 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.46997 * 300.00209 * 1 2 3 33 33 H 1.08991 * 109.46933 * 60.00690 * 1 2 3 34 34 H 1.09000 * 109.47461 * 295.00683 * 4 2 1 35 35 H 1.09011 * 109.46575 * 55.00317 * 4 2 1 36 36 H 1.00897 * 111.00192 * 303.95862 * 5 4 2 37 37 H 1.08997 * 109.46848 * 300.00742 * 6 5 4 38 38 H 1.08999 * 109.46466 * 60.00811 * 6 5 4 39 39 H 0.96996 * 120.00373 * 0.02562 * 9 7 6 40 40 H 0.96989 * 120.00167 * 180.02562 * 13 12 10 41 41 H 0.96995 * 120.00292 * 265.27526 * 18 2 1 42 42 H 1.08999 * 110.75244 * 261.77457 * 23 21 19 43 43 H 1.09006 * 110.74475 * 25.11866 * 23 21 19 44 44 H 1.08003 * 119.88222 * 0.99806 * 26 25 24 45 45 H 1.08005 * 119.82677 * 180.02562 * 27 26 25 46 46 H 1.08002 * 120.11642 * 179.83855 * 28 27 26 47 47 H 1.07999 * 120.01560 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7211 1.2494 5 7 3.5041 -0.8266 1.1905 6 6 4.0303 -1.5157 2.3764 7 6 5.5317 -1.6042 2.2809 8 8 6.1067 -1.1386 1.3199 9 7 6.2354 -2.1998 3.2640 10 6 7.6013 -2.2807 3.1769 11 1 8.1133 -1.8669 2.3208 12 6 8.3269 -2.8943 4.1907 13 7 9.6360 -2.9724 4.1071 14 14 7.4413 -3.6095 5.6718 15 1 7.0921 -5.0275 5.4027 16 1 8.3270 -3.5350 6.8616 17 1 6.2010 -2.8344 5.9288 18 7 2.0184 -0.6907 -1.1960 19 6 2.1471 -0.0184 -2.3571 20 8 1.8582 1.1582 -2.4117 21 6 2.6489 -0.7290 -3.5876 22 1 3.6204 -1.1869 -3.4016 23 6 1.6249 -1.7814 -4.0746 24 8 1.7372 -1.6963 -5.5055 25 6 2.1378 -0.4418 -5.8501 26 6 2.0581 0.2163 -7.0751 27 6 2.5503 1.4979 -7.2085 28 6 3.1279 2.1405 -6.1289 29 6 3.2080 1.4951 -4.9078 30 6 2.7137 0.2166 -4.7714 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5137 -0.8900 34 1 1.7516 -0.1582 2.1370 35 1 1.6054 -1.7197 1.2953 36 1 3.7996 -1.2883 0.3435 37 1 3.7557 -0.9586 3.2721 38 1 3.6095 -2.5197 2.4296 39 1 5.7756 -2.5718 4.0328 40 1 10.1425 -3.4010 4.8145 41 1 2.2453 -1.6328 -1.1534 42 1 1.8979 -2.7768 -3.7243 43 1 0.6179 -1.5194 -3.7500 44 1 1.6088 -0.2785 -7.9235 45 1 2.4847 2.0020 -8.1614 46 1 3.5144 3.1430 -6.2383 47 1 3.6579 1.9934 -4.0618 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498208203.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:41 Heat of formation + Delta-G solvation = -93.832166 kcal Electronic energy + Delta-G solvation = -29727.659899 eV Core-core repulsion = 25488.911156 eV Total energy + Delta-G solvation = -4238.748743 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.48239 -40.63493 -40.21882 -38.38657 -37.89302 -36.07473 -35.14067 -34.02177 -33.73793 -32.07789 -31.02790 -30.11793 -29.11071 -26.64917 -25.36762 -24.53340 -23.84322 -23.12693 -21.96052 -21.41150 -21.26627 -20.27580 -18.70275 -18.51835 -17.88693 -17.68296 -17.13868 -17.03799 -16.65475 -16.51494 -16.33472 -16.00033 -15.67447 -15.49148 -15.09786 -14.97179 -14.64605 -14.45915 -14.36561 -14.22022 -14.19213 -14.00830 -13.73980 -13.40737 -13.15149 -13.08209 -13.02972 -12.81090 -12.70568 -12.58109 -12.41359 -12.00789 -11.95840 -11.92310 -11.79844 -11.51143 -10.96987 -10.46212 -10.25335 -10.15916 -9.89505 -9.32224 -9.19728 -8.41438 -6.02760 0.26973 0.38703 1.30579 1.35950 1.45320 1.47863 1.95962 2.03585 2.22029 2.23322 2.69876 2.77509 3.13246 3.15181 3.36791 3.48989 3.70165 3.87355 3.88603 4.04680 4.13202 4.19616 4.21568 4.34407 4.41471 4.44294 4.45220 4.48836 4.54570 4.57483 4.66065 4.68364 4.76227 4.78532 5.01828 5.08534 5.27346 5.31506 5.42740 5.47626 5.52308 5.54124 5.59469 5.89047 6.02559 6.14623 6.36060 6.44310 6.59491 6.88094 7.15181 7.39752 7.96814 8.76277 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014539 B = 0.002097 C = 0.001957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.454001 B =13349.816159 C =14307.761200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.145 3.855 3 H 0.064 0.936 4 C 0.058 3.942 5 N -0.693 5.693 6 C 0.063 3.937 7 C 0.446 3.554 8 O -0.617 6.617 9 N -0.590 5.590 10 C -0.329 4.329 11 H 0.053 0.947 12 C -0.018 4.018 13 N -0.935 5.935 14 Si 0.967 3.033 15 H -0.255 1.255 16 H -0.278 1.278 17 H -0.229 1.229 18 N -0.710 5.710 19 C 0.529 3.471 20 O -0.565 6.565 21 C -0.104 4.104 22 H 0.131 0.869 23 C 0.070 3.930 24 O -0.311 6.311 25 C 0.087 3.913 26 C -0.149 4.149 27 C -0.079 4.079 28 C -0.156 4.156 29 C -0.065 4.065 30 C -0.175 4.175 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.042 0.958 34 H 0.101 0.899 35 H 0.066 0.934 36 H 0.343 0.657 37 H 0.115 0.885 38 H 0.086 0.914 39 H 0.391 0.609 40 H 0.279 0.721 41 H 0.411 0.589 42 H 0.150 0.850 43 H 0.086 0.914 44 H 0.147 0.853 45 H 0.164 0.836 46 H 0.147 0.853 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.258 0.661 -13.115 28.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.041 3.959 3 H 0.082 0.918 4 C -0.071 4.071 5 N -0.326 5.326 6 C -0.069 4.069 7 C 0.234 3.766 8 O -0.501 6.501 9 N -0.232 5.232 10 C -0.458 4.458 11 H 0.071 0.929 12 C -0.216 4.216 13 N -0.576 5.576 14 Si 0.787 3.213 15 H -0.179 1.179 16 H -0.203 1.203 17 H -0.153 1.153 18 N -0.362 5.362 19 C 0.315 3.685 20 O -0.443 6.443 21 C -0.125 4.125 22 H 0.149 0.851 23 C -0.005 4.005 24 O -0.225 6.225 25 C 0.042 3.958 26 C -0.167 4.167 27 C -0.097 4.097 28 C -0.174 4.174 29 C -0.083 4.083 30 C -0.176 4.176 31 H 0.096 0.904 32 H 0.100 0.900 33 H 0.062 0.938 34 H 0.119 0.881 35 H 0.084 0.916 36 H 0.163 0.837 37 H 0.133 0.867 38 H 0.104 0.896 39 H 0.226 0.774 40 H 0.088 0.912 41 H 0.248 0.752 42 H 0.167 0.833 43 H 0.104 0.896 44 H 0.165 0.835 45 H 0.182 0.818 46 H 0.164 0.836 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -24.844 2.179 -13.555 28.385 hybrid contribution 0.607 -1.377 0.933 1.770 sum -24.237 0.803 -12.622 27.338 Atomic orbital electron populations 1.22058 0.93054 1.03360 1.02577 1.21021 0.94769 0.96912 0.83238 0.91786 1.22365 0.85915 1.00858 0.97973 1.59967 1.10509 1.57861 1.04305 1.21651 0.89063 1.00034 0.96199 1.21091 0.91012 0.81196 0.83336 1.90556 1.73049 1.51563 1.34962 1.42025 1.06075 1.53833 1.21250 1.18991 0.82056 1.37391 1.07382 0.92896 1.26168 0.96210 0.97357 1.01874 1.69810 1.07574 1.44361 1.35861 0.85335 0.79440 0.79764 0.76776 1.17932 1.20281 1.15269 1.45937 1.66840 1.14369 1.09038 1.20229 0.76920 0.86797 0.84566 1.90697 1.50897 1.17353 1.85331 1.21640 1.03011 0.96188 0.91698 0.85111 1.24000 0.98419 1.00846 0.77260 1.86811 1.84336 1.26623 1.24731 1.19810 0.95574 0.84821 0.95628 1.20605 1.05188 0.95468 0.95467 1.21281 0.95242 0.93209 0.99929 1.21380 1.02272 1.01498 0.92216 1.20487 0.97068 0.92762 0.98028 1.20442 1.05413 0.96907 0.94830 0.90353 0.89968 0.93848 0.88107 0.91618 0.83726 0.86740 0.89644 0.77378 0.91165 0.75237 0.83264 0.89631 0.83482 0.81821 0.83566 0.87133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.48 71.98 0.68 -1.41 16 2 C 0.15 2.65 2.88 44.99 0.13 2.78 16 3 H 0.06 1.65 7.58 -2.39 -0.02 1.63 16 4 C 0.06 0.93 5.30 86.30 0.46 1.39 16 5 N -0.69 -18.00 6.12 -517.90 -3.17 -21.17 16 6 C 0.06 1.69 6.17 85.56 0.53 2.22 16 7 C 0.45 19.29 7.82 87.66 0.69 19.97 16 8 O -0.62 -33.59 15.78 -3.06 -0.05 -33.64 16 9 N -0.59 -26.90 5.09 -306.99 -1.56 -28.46 16 10 C -0.33 -19.03 10.16 84.04 0.85 -18.18 16 11 H 0.05 3.68 7.39 -2.91 -0.02 3.66 16 12 C -0.02 -0.97 5.50 84.93 0.47 -0.50 16 13 N -0.94 -56.11 13.96 21.66 0.30 -55.81 16 14 Si 0.97 37.78 27.74 68.60 1.90 39.68 16 15 H -0.25 -9.32 7.11 99.48 0.71 -8.62 16 16 H -0.28 -10.90 7.11 99.48 0.71 -10.19 16 17 H -0.23 -7.42 6.52 99.48 0.65 -6.78 16 18 N -0.71 -12.52 4.35 -442.53 -1.92 -14.44 16 19 C 0.53 12.43 7.02 87.66 0.62 13.05 16 20 O -0.56 -17.95 14.85 -3.03 -0.04 -17.99 16 21 C -0.10 -2.12 3.52 -11.40 -0.04 -2.16 16 22 H 0.13 2.44 8.14 -2.39 -0.02 2.42 16 23 C 0.07 1.04 7.54 72.56 0.55 1.59 16 24 O -0.31 -6.53 11.10 -95.02 -1.06 -7.59 16 25 C 0.09 1.99 7.04 22.68 0.16 2.15 16 26 C -0.15 -2.82 10.06 22.45 0.23 -2.60 16 27 C -0.08 -1.31 10.02 22.21 0.22 -1.09 16 28 C -0.16 -3.11 10.07 22.31 0.22 -2.89 16 29 C -0.07 -1.66 9.08 22.18 0.20 -1.46 16 30 C -0.17 -4.35 5.39 -19.53 -0.11 -4.45 16 31 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 36 H 0.34 9.42 7.29 -89.70 -0.65 8.76 16 37 H 0.11 2.60 8.14 -2.39 -0.02 2.58 16 38 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.39 14.46 5.76 -92.71 -0.53 13.93 16 40 H 0.28 15.27 8.31 -92.72 -0.77 14.50 16 41 H 0.41 4.95 8.17 -92.71 -0.76 4.20 16 42 H 0.15 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.09 1.18 7.91 -2.38 -0.02 1.16 16 44 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 45 H 0.16 1.54 8.06 -2.91 -0.02 1.52 16 46 H 0.15 2.24 8.06 -2.91 -0.02 2.22 16 47 H 0.11 3.09 7.81 -2.91 -0.02 3.07 16 Total: -1.00 -86.87 394.42 -0.72 -87.59 By element: Atomic # 1 Polarization: 44.40 SS G_CDS: -0.98 Total: 43.42 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: 5.86 Total: 8.41 kcal Atomic # 7 Polarization: -113.53 SS G_CDS: -6.35 Total: -119.88 kcal Atomic # 8 Polarization: -58.07 SS G_CDS: -1.15 Total: -59.22 kcal Atomic # 14 Polarization: 37.78 SS G_CDS: 1.90 Total: 39.68 kcal Total: -86.87 -0.72 -87.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498208203.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.237 kcal (2) G-P(sol) polarization free energy of solvation -86.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds