Wall clock time and date at job start Wed Apr 1 2020 05:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.47119 * 2 1 4 4 N 1.28519 * 124.44085 * 90.03118 * 3 2 1 5 5 C 1.31139 * 109.05683 * 179.97438 * 4 3 2 6 6 C 1.40921 * 105.77594 * 359.97438 * 5 4 3 7 7 C 1.47800 * 127.23308 * 179.97438 * 6 5 4 8 8 O 1.21558 * 120.00585 * 359.97438 * 7 6 5 9 9 N 1.34780 * 119.99707 * 180.02562 * 7 6 5 10 10 C 1.46496 * 120.00061 * 180.02562 * 9 7 6 11 11 C 1.50700 * 109.47151 * 180.02562 * 10 9 7 12 12 C 1.38221 * 120.01073 * 260.01872 * 11 10 9 13 13 C 1.38220 * 120.02576 * 179.72487 * 12 11 10 14 14 C 1.38277 * 120.04953 * 0.51339 * 13 12 11 15 15 C 1.50700 * 119.98580 * 179.77046 * 14 13 12 16 16 N 1.46498 * 109.46769 * 269.71637 * 15 14 13 17 17 C 1.36943 * 119.99752 * 179.72432 * 16 15 14 18 18 H 1.08002 * 119.99793 * 0.27665 * 17 16 15 19 19 C 1.38811 * 120.00012 * 180.27737 * 17 16 15 20 20 N 1.31624 * 119.99698 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00072 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47159 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.47290 * 120.00044 * 21 19 17 24 24 H 1.48503 * 109.47163 * 240.00049 * 21 19 17 25 25 C 1.38170 * 120.02576 * 359.48562 * 14 13 12 26 26 C 1.38441 * 120.01389 * 80.00236 * 11 10 9 27 27 F 1.35100 * 120.02602 * 359.97438 * 26 11 10 28 28 N 1.28586 * 124.44819 * 270.28678 * 3 2 1 29 29 H 1.08998 * 109.46964 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46399 * 299.99612 * 1 2 3 31 31 H 1.08993 * 109.47083 * 59.99443 * 1 2 3 32 32 H 1.09003 * 109.47090 * 240.00641 * 2 1 3 33 33 H 1.08996 * 109.47666 * 120.00104 * 2 1 3 34 34 H 1.08003 * 127.10899 * 179.97438 * 5 4 3 35 35 H 0.97003 * 120.00316 * 359.97438 * 9 7 6 36 36 H 1.09000 * 109.47450 * 60.00120 * 10 9 7 37 37 H 1.09004 * 109.47141 * 299.99581 * 10 9 7 38 38 H 1.07997 * 119.98840 * 359.97438 * 12 11 10 39 39 H 1.07998 * 119.98077 * 180.25523 * 13 12 11 40 40 H 1.09004 * 109.47210 * 149.71995 * 15 14 13 41 41 H 1.08994 * 109.47121 * 29.71965 * 15 14 13 42 42 H 0.97001 * 120.00384 * 0.02562 * 16 15 14 43 43 H 0.96999 * 119.99739 * 180.02562 * 20 19 17 44 44 H 1.07998 * 120.01636 * 180.23671 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2611 2.0663 1.0599 5 6 2.6830 3.2583 0.7120 6 6 2.6864 3.2673 -0.6972 7 6 3.0805 4.3825 -1.5834 8 8 3.4524 5.4365 -1.1054 9 7 3.0267 4.2312 -2.9216 10 6 3.4179 5.3364 -3.8000 11 6 3.2669 4.9125 -5.2383 12 6 4.3748 4.5109 -5.9606 13 6 4.2358 4.1166 -7.2781 14 6 2.9901 4.1336 -7.8782 15 6 2.8410 3.7083 -9.3162 16 7 2.9999 4.8741 -10.1891 17 6 2.9099 4.7294 -11.5479 18 1 2.7172 3.7567 -11.9757 19 6 3.0661 5.8330 -12.3752 20 7 3.3014 7.0184 -11.8537 21 14 2.9426 5.6358 -14.2286 22 1 2.6738 4.2130 -14.5582 23 1 1.8351 6.4805 -14.7436 24 1 4.2202 6.0572 -14.8575 25 6 1.8812 4.5346 -7.1581 26 6 2.0184 4.9249 -5.8364 27 9 0.9348 5.3164 -5.1311 28 7 2.2558 2.0688 -1.0604 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 2.9687 4.0660 1.3696 35 1 2.7297 3.3903 -3.3031 36 1 4.4568 5.6038 -3.6069 37 1 2.7789 6.1980 -3.6066 38 1 5.3488 4.5013 -5.4943 39 1 5.1013 3.7990 -7.8406 40 1 1.8524 3.2743 -9.4661 41 1 3.6034 2.9675 -9.5569 42 1 3.1733 5.7477 -9.8048 43 1 3.4103 7.7896 -12.4319 44 1 0.9078 4.5442 -7.6258 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001508236913.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:47:15 Heat of formation + Delta-G solvation = 63.402214 kcal Electronic energy + Delta-G solvation = -28583.579303 eV Core-core repulsion = 24260.481201 eV Total energy + Delta-G solvation = -4323.098102 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.150 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -48.81602 -44.04032 -39.87929 -39.02082 -35.67249 -35.32613 -34.44174 -33.11646 -32.13248 -30.96836 -30.51820 -30.12953 -27.42018 -25.57995 -24.64352 -23.71254 -22.81410 -22.42930 -21.97999 -20.79119 -20.73027 -18.40440 -17.61003 -17.45993 -17.01955 -16.61482 -16.52890 -16.23358 -15.55759 -15.47235 -15.25698 -15.10148 -14.72695 -14.66168 -14.10079 -14.00326 -13.53581 -13.40760 -13.35783 -13.23744 -12.95746 -12.79027 -12.38586 -12.20998 -12.06719 -12.03378 -11.84150 -11.43698 -11.39601 -11.10118 -10.86992 -10.82249 -10.68571 -10.52791 -10.08934 -9.86663 -9.84046 -9.33179 -8.97087 -8.81514 -8.52460 -7.01629 -5.82171 -3.12928 0.94911 1.10628 1.33099 1.58773 1.70734 2.88308 2.98605 3.40149 3.45361 3.48084 3.52276 3.72587 4.21141 4.22543 4.29546 4.42909 4.49877 4.54333 4.56756 4.71314 4.77274 4.94759 5.06989 5.08386 5.17799 5.27839 5.43307 5.45870 5.49544 5.51142 5.57102 5.62005 5.92973 6.05659 6.06875 6.09289 6.12602 6.15228 6.35323 6.38885 6.47734 6.89551 6.99800 7.17272 7.64158 7.72684 7.88104 8.34977 9.46919 10.00986 10.36506 11.40132 Molecular weight = 347.15amu Principal moments of inertia in cm(-1) A = 0.020087 B = 0.001842 C = 0.001760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.628697 B =15195.540644 C =15907.400757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.132 3.868 3 N -0.139 5.139 4 N -0.290 5.290 5 C 0.035 3.965 6 C -0.047 4.047 7 C 0.610 3.390 8 O -0.527 6.527 9 N -0.708 5.708 10 C 0.168 3.832 11 C -0.159 4.159 12 C -0.074 4.074 13 C -0.116 4.116 14 C -0.035 4.035 15 C 0.184 3.816 16 N -0.727 5.727 17 C -0.245 4.245 18 H 0.073 0.927 19 C -0.012 4.012 20 N -0.930 5.930 21 Si 0.909 3.091 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 C -0.140 4.140 26 C 0.112 3.888 27 F -0.139 7.139 28 N -0.248 5.248 29 H 0.089 0.911 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.208 0.792 35 H 0.408 0.592 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.132 0.868 39 H 0.133 0.867 40 H 0.032 0.968 41 H 0.034 0.966 42 H 0.386 0.614 43 H 0.256 0.744 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.048 -14.088 26.104 29.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.013 3.987 3 N -0.043 5.043 4 N -0.130 5.130 5 C -0.148 4.148 6 C -0.210 4.210 7 C 0.393 3.607 8 O -0.401 6.401 9 N -0.359 5.359 10 C 0.045 3.955 11 C -0.161 4.161 12 C -0.092 4.092 13 C -0.134 4.134 14 C -0.036 4.036 15 C 0.057 3.943 16 N -0.371 5.371 17 C -0.375 4.375 18 H 0.091 0.909 19 C -0.208 4.208 20 N -0.578 5.578 21 Si 0.740 3.260 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.218 1.218 25 C -0.159 4.159 26 C 0.093 3.907 27 F -0.117 7.117 28 N -0.096 5.096 29 H 0.107 0.893 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.131 0.869 33 H 0.130 0.870 34 H 0.225 0.775 35 H 0.244 0.756 36 H 0.103 0.897 37 H 0.100 0.900 38 H 0.150 0.850 39 H 0.151 0.849 40 H 0.049 0.951 41 H 0.051 0.949 42 H 0.220 0.780 43 H 0.066 0.934 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -2.297 -14.653 26.288 30.184 hybrid contribution -0.106 0.822 -1.037 1.328 sum -2.403 -13.831 25.251 28.891 Atomic orbital electron populations 1.22202 0.92720 1.04235 1.03919 1.22147 0.96372 0.73937 1.06265 1.48299 1.43444 1.13461 0.99096 1.74023 1.17753 1.05590 1.15598 1.24863 1.01160 0.95210 0.93607 1.23045 1.09375 0.93669 0.94864 1.16600 0.77701 0.84974 0.81408 1.90831 1.47346 1.26615 1.75352 1.45920 1.67093 1.17833 1.05050 1.20120 1.01942 0.89137 0.84262 1.19694 0.92744 1.07411 0.96219 1.20914 0.97506 0.96669 0.94137 1.21208 0.97635 1.00182 0.94407 1.20255 0.92051 0.94481 0.96828 1.19735 0.98987 0.91659 0.83924 1.42329 1.86946 1.05271 1.02587 1.19269 1.41655 0.94362 0.82245 0.90913 1.24782 1.02433 0.95438 0.98165 1.69684 1.55389 0.98671 1.34021 0.86087 0.77255 0.77264 0.85362 1.20487 1.21799 1.21782 1.21130 1.00943 1.01745 0.92112 1.17533 0.82676 1.00143 0.90391 1.91489 1.53299 1.88476 1.78471 1.74368 1.14757 1.04520 1.15963 0.89262 0.91295 0.91160 0.86932 0.86960 0.77484 0.75623 0.89658 0.89967 0.85038 0.84927 0.95066 0.94862 0.77983 0.93425 0.84462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.62 10.24 37.16 0.38 -0.24 16 2 C 0.13 0.55 7.24 -4.04 -0.03 0.52 16 3 N -0.14 -1.19 3.94 -10.61 -0.04 -1.23 16 4 N -0.29 -2.77 12.01 30.90 0.37 -2.40 16 5 C 0.04 0.34 12.04 -16.83 -0.20 0.14 16 6 C -0.05 -0.51 7.21 -82.68 -0.60 -1.11 16 7 C 0.61 7.41 7.83 -12.35 -0.10 7.31 16 8 O -0.53 -7.69 16.95 5.31 0.09 -7.60 16 9 N -0.71 -7.80 5.55 -62.45 -0.35 -8.14 16 10 C 0.17 1.92 5.52 -5.20 -0.03 1.89 16 11 C -0.16 -1.98 5.25 -104.55 -0.55 -2.53 16 12 C -0.07 -0.88 9.67 -39.59 -0.38 -1.27 16 13 C -0.12 -1.62 9.70 -39.57 -0.38 -2.01 16 14 C -0.04 -0.57 5.25 -104.63 -0.55 -1.12 16 15 C 0.18 3.53 6.38 -5.19 -0.03 3.50 16 16 N -0.73 -17.96 5.59 -61.09 -0.34 -18.30 16 17 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 18 H 0.07 1.92 7.83 -52.49 -0.41 1.50 16 19 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 20 N -0.93 -27.87 13.06 55.49 0.72 -27.14 16 21 Si 0.91 22.05 29.55 -169.99 -5.02 17.02 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 25 C -0.14 -2.16 9.68 -39.51 -0.38 -2.54 16 26 C 0.11 1.60 7.25 -39.41 -0.29 1.31 16 27 F -0.14 -2.03 16.66 2.25 0.04 -2.00 16 28 N -0.25 -2.51 11.84 33.42 0.40 -2.11 16 29 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.11 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.11 0.27 8.14 -51.93 -0.42 -0.16 16 34 H 0.21 1.52 8.06 -52.48 -0.42 1.10 16 35 H 0.41 4.16 8.23 -40.82 -0.34 3.82 16 36 H 0.09 0.90 8.01 -51.93 -0.42 0.48 16 37 H 0.08 1.02 7.95 -51.93 -0.41 0.61 16 38 H 0.13 1.24 8.04 -52.49 -0.42 0.82 16 39 H 0.13 1.75 8.06 -52.49 -0.42 1.33 16 40 H 0.03 0.60 8.09 -51.93 -0.42 0.18 16 41 H 0.03 0.62 8.08 -51.93 -0.42 0.20 16 42 H 0.39 10.22 7.66 -40.82 -0.31 9.90 16 43 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 44 H 0.14 2.10 8.06 -52.49 -0.42 1.67 16 LS Contribution 392.30 15.07 5.91 5.91 Total: -1.00 -33.72 392.30 -7.27 -40.99 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -5.67 Total: 8.40 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: -3.39 Total: -3.41 kcal Atomic # 7 Polarization: -60.09 SS G_CDS: 0.76 Total: -59.33 kcal Atomic # 8 Polarization: -7.69 SS G_CDS: 0.09 Total: -7.60 kcal Atomic # 9 Polarization: -2.03 SS G_CDS: 0.04 Total: -2.00 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.72 -7.27 -40.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001508236913.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.396 kcal (2) G-P(sol) polarization free energy of solvation -33.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds