Wall clock time and date at job start Wed Apr 1 2020 05:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.47119 * 2 1 4 4 N 1.28519 * 124.44085 * 90.03118 * 3 2 1 5 5 C 1.31139 * 109.05683 * 179.97438 * 4 3 2 6 6 C 1.40921 * 105.77594 * 359.97438 * 5 4 3 7 7 C 1.47800 * 127.23308 * 179.97438 * 6 5 4 8 8 O 1.21558 * 120.00585 * 359.97438 * 7 6 5 9 9 N 1.34780 * 119.99707 * 180.02562 * 7 6 5 10 10 C 1.46496 * 120.00061 * 180.02562 * 9 7 6 11 11 C 1.50700 * 109.47151 * 180.02562 * 10 9 7 12 12 C 1.38221 * 120.01073 * 260.01872 * 11 10 9 13 13 C 1.38220 * 120.02576 * 179.72487 * 12 11 10 14 14 C 1.38277 * 120.04953 * 0.51339 * 13 12 11 15 15 C 1.50700 * 119.98580 * 179.77046 * 14 13 12 16 16 N 1.46498 * 109.46769 * 269.71637 * 15 14 13 17 17 C 1.36943 * 119.99752 * 179.72432 * 16 15 14 18 18 H 1.08002 * 119.99793 * 0.27665 * 17 16 15 19 19 C 1.38811 * 120.00012 * 180.27737 * 17 16 15 20 20 N 1.31624 * 119.99698 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00072 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47159 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.47290 * 120.00044 * 21 19 17 24 24 H 1.48503 * 109.47163 * 240.00049 * 21 19 17 25 25 C 1.38170 * 120.02576 * 359.48562 * 14 13 12 26 26 C 1.38441 * 120.01389 * 80.00236 * 11 10 9 27 27 F 1.35100 * 120.02602 * 359.97438 * 26 11 10 28 28 N 1.28586 * 124.44819 * 270.28678 * 3 2 1 29 29 H 1.08998 * 109.46964 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46399 * 299.99612 * 1 2 3 31 31 H 1.08993 * 109.47083 * 59.99443 * 1 2 3 32 32 H 1.09003 * 109.47090 * 240.00641 * 2 1 3 33 33 H 1.08996 * 109.47666 * 120.00104 * 2 1 3 34 34 H 1.08003 * 127.10899 * 179.97438 * 5 4 3 35 35 H 0.97003 * 120.00316 * 359.97438 * 9 7 6 36 36 H 1.09000 * 109.47450 * 60.00120 * 10 9 7 37 37 H 1.09004 * 109.47141 * 299.99581 * 10 9 7 38 38 H 1.07997 * 119.98840 * 359.97438 * 12 11 10 39 39 H 1.07998 * 119.98077 * 180.25523 * 13 12 11 40 40 H 1.09004 * 109.47210 * 149.71995 * 15 14 13 41 41 H 1.08994 * 109.47121 * 29.71965 * 15 14 13 42 42 H 0.97001 * 120.00384 * 0.02562 * 16 15 14 43 43 H 0.96999 * 119.99739 * 180.02562 * 20 19 17 44 44 H 1.07998 * 120.01636 * 180.23671 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2611 2.0663 1.0599 5 6 2.6830 3.2583 0.7120 6 6 2.6864 3.2673 -0.6972 7 6 3.0805 4.3825 -1.5834 8 8 3.4524 5.4365 -1.1054 9 7 3.0267 4.2312 -2.9216 10 6 3.4179 5.3364 -3.8000 11 6 3.2669 4.9125 -5.2383 12 6 4.3748 4.5109 -5.9606 13 6 4.2358 4.1166 -7.2781 14 6 2.9901 4.1336 -7.8782 15 6 2.8410 3.7083 -9.3162 16 7 2.9999 4.8741 -10.1891 17 6 2.9099 4.7294 -11.5479 18 1 2.7172 3.7567 -11.9757 19 6 3.0661 5.8330 -12.3752 20 7 3.3014 7.0184 -11.8537 21 14 2.9426 5.6358 -14.2286 22 1 2.6738 4.2130 -14.5582 23 1 1.8351 6.4805 -14.7436 24 1 4.2202 6.0572 -14.8575 25 6 1.8812 4.5346 -7.1581 26 6 2.0184 4.9249 -5.8364 27 9 0.9348 5.3164 -5.1311 28 7 2.2558 2.0688 -1.0604 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 2.9687 4.0660 1.3696 35 1 2.7297 3.3903 -3.3031 36 1 4.4568 5.6038 -3.6069 37 1 2.7789 6.1980 -3.6066 38 1 5.3488 4.5013 -5.4943 39 1 5.1013 3.7990 -7.8406 40 1 1.8524 3.2743 -9.4661 41 1 3.6034 2.9675 -9.5569 42 1 3.1733 5.7477 -9.8048 43 1 3.4103 7.7896 -12.4319 44 1 0.9078 4.5442 -7.6258 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001508236913.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:47:14 Heat of formation + Delta-G solvation = 40.318299 kcal Electronic energy + Delta-G solvation = -28584.580297 eV Core-core repulsion = 24260.481201 eV Total energy + Delta-G solvation = -4324.099096 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.150 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.97401 -44.74426 -40.87575 -40.12697 -36.98545 -35.90035 -35.83292 -34.04346 -33.54048 -32.05678 -31.56598 -31.27589 -28.71786 -26.64032 -25.65806 -24.75249 -24.05953 -23.78875 -22.58546 -22.00471 -21.59157 -19.39898 -19.20054 -18.27132 -17.92170 -17.75540 -17.61760 -17.22591 -16.75639 -16.50235 -16.38225 -16.11562 -15.93704 -15.49840 -15.21455 -15.13088 -14.96504 -14.87834 -14.50606 -14.12527 -13.71573 -13.69236 -13.43018 -13.15174 -13.11467 -13.01873 -12.91191 -12.79784 -12.53590 -12.37848 -12.12976 -12.09625 -11.96504 -11.76012 -11.56333 -11.51881 -11.00001 -10.59114 -10.23502 -9.96024 -9.67006 -9.03544 -7.95658 -5.26013 -0.02186 0.15898 0.21696 0.85481 1.17034 1.48966 1.49535 1.59748 1.98282 2.10129 2.51072 2.64469 2.86340 3.16899 3.38354 3.41549 3.68774 3.70805 3.90135 3.90531 3.91665 4.04003 4.12855 4.21861 4.24380 4.31955 4.51140 4.54111 4.57377 4.67693 4.73443 4.74913 4.81379 4.94933 4.95908 5.04222 5.14310 5.14623 5.15777 5.29798 5.49496 5.53007 5.63020 5.86796 6.25071 6.27923 6.91761 7.05794 7.32135 8.04070 8.28377 9.27683 Molecular weight = 347.15amu Principal moments of inertia in cm(-1) A = 0.020087 B = 0.001842 C = 0.001760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.628697 B =15195.540644 C =15907.400757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.118 3.882 3 N -0.131 5.131 4 N -0.297 5.297 5 C 0.030 3.970 6 C -0.067 4.067 7 C 0.613 3.387 8 O -0.556 6.556 9 N -0.701 5.701 10 C 0.171 3.829 11 C -0.144 4.144 12 C -0.060 4.060 13 C -0.115 4.115 14 C -0.053 4.053 15 C 0.185 3.815 16 N -0.740 5.740 17 C -0.245 4.245 18 H 0.081 0.919 19 C -0.076 4.076 20 N -0.969 5.969 21 Si 0.976 3.024 22 H -0.263 1.263 23 H -0.295 1.295 24 H -0.293 1.293 25 C -0.149 4.149 26 C 0.104 3.896 27 F -0.144 7.144 28 N -0.252 5.252 29 H 0.116 0.884 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.130 0.870 33 H 0.134 0.866 34 H 0.224 0.776 35 H 0.413 0.587 36 H 0.101 0.899 37 H 0.072 0.928 38 H 0.167 0.833 39 H 0.142 0.858 40 H 0.033 0.967 41 H 0.044 0.956 42 H 0.374 0.626 43 H 0.251 0.749 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.453 -15.993 27.040 31.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.001 3.999 3 N -0.037 5.037 4 N -0.137 5.137 5 C -0.152 4.152 6 C -0.229 4.229 7 C 0.397 3.603 8 O -0.433 6.433 9 N -0.352 5.352 10 C 0.048 3.952 11 C -0.146 4.146 12 C -0.078 4.078 13 C -0.134 4.134 14 C -0.053 4.053 15 C 0.059 3.941 16 N -0.383 5.383 17 C -0.377 4.377 18 H 0.099 0.901 19 C -0.268 4.268 20 N -0.619 5.619 21 Si 0.805 3.195 22 H -0.188 1.188 23 H -0.223 1.223 24 H -0.220 1.220 25 C -0.169 4.169 26 C 0.084 3.916 27 F -0.122 7.122 28 N -0.102 5.102 29 H 0.134 0.866 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.148 0.852 33 H 0.152 0.848 34 H 0.241 0.759 35 H 0.250 0.750 36 H 0.119 0.881 37 H 0.091 0.909 38 H 0.184 0.816 39 H 0.160 0.840 40 H 0.051 0.949 41 H 0.062 0.938 42 H 0.206 0.794 43 H 0.060 0.940 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.719 -16.626 27.232 31.953 hybrid contribution -0.341 1.275 -1.204 1.787 sum -2.060 -15.351 26.028 30.288 Atomic orbital electron populations 1.22179 0.92227 1.05574 1.02523 1.22650 0.96758 0.72193 1.08255 1.48830 1.42039 1.14322 0.98475 1.74028 1.18032 1.05676 1.15989 1.25187 1.00830 0.95747 0.93467 1.22907 1.10931 0.93848 0.95197 1.16708 0.77102 0.84883 0.81596 1.90810 1.48826 1.27788 1.75838 1.45832 1.66716 1.17857 1.04783 1.20105 1.02692 0.88896 0.83502 1.19819 0.92096 1.05991 0.96654 1.21220 0.98727 0.94774 0.93127 1.21357 0.96930 0.99808 0.95297 1.19997 0.93319 0.96626 0.95399 1.19804 0.99095 0.90053 0.85142 1.42530 1.86853 1.06345 1.02536 1.19699 1.39727 0.94530 0.83707 0.90106 1.25613 1.03312 0.95303 1.02592 1.69840 1.57465 0.99336 1.35292 0.85041 0.76628 0.77785 0.80078 1.18762 1.22280 1.22008 1.21080 1.00610 1.02406 0.92791 1.17604 0.83260 1.00629 0.90101 1.91476 1.53713 1.88594 1.78439 1.74327 1.14777 1.04438 1.16658 0.86563 0.92353 0.92778 0.85199 0.84792 0.75948 0.75045 0.88083 0.90925 0.81598 0.84009 0.94931 0.93830 0.79417 0.94000 0.85228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.92 10.24 71.98 0.74 -0.19 16 2 C 0.12 0.74 7.24 86.38 0.63 1.37 16 3 N -0.13 -2.05 3.94 -187.49 -0.74 -2.79 16 4 N -0.30 -5.31 12.01 -56.16 -0.67 -5.98 16 5 C 0.03 0.57 12.04 85.45 1.03 1.60 16 6 C -0.07 -1.42 7.21 42.24 0.30 -1.12 16 7 C 0.61 14.42 7.83 86.77 0.68 15.09 16 8 O -0.56 -15.93 16.95 -3.90 -0.07 -16.00 16 9 N -0.70 -14.56 5.55 -469.75 -2.60 -17.16 16 10 C 0.17 3.62 5.52 85.63 0.47 4.10 16 11 C -0.14 -3.34 5.25 -19.82 -0.10 -3.44 16 12 C -0.06 -1.28 9.67 22.26 0.22 -1.07 16 13 C -0.12 -3.03 9.70 22.27 0.22 -2.82 16 14 C -0.05 -1.67 5.25 -19.87 -0.10 -1.77 16 15 C 0.18 7.04 6.38 85.63 0.55 7.58 16 16 N -0.74 -36.79 5.59 -347.18 -1.94 -38.74 16 17 C -0.25 -13.39 9.99 84.03 0.84 -12.55 16 18 H 0.08 4.19 7.83 -2.91 -0.02 4.16 16 19 C -0.08 -4.31 5.50 84.86 0.47 -3.84 16 20 N -0.97 -59.06 13.06 21.65 0.28 -58.78 16 21 Si 0.98 45.50 29.55 68.60 2.03 47.53 16 22 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 23 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 24 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 25 C -0.15 -4.61 9.68 22.31 0.22 -4.39 16 26 C 0.10 2.88 7.25 22.38 0.16 3.05 16 27 F -0.14 -4.18 16.66 44.97 0.75 -3.43 16 28 N -0.25 -4.81 11.84 -48.17 -0.57 -5.38 16 29 H 0.12 0.02 8.14 -2.39 -0.02 0.00 16 30 H 0.06 0.46 8.14 -2.38 -0.02 0.44 16 31 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.13 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.13 0.28 8.14 -2.39 -0.02 0.26 16 34 H 0.22 3.10 8.06 -2.91 -0.02 3.08 16 35 H 0.41 7.84 8.23 -92.71 -0.76 7.08 16 36 H 0.10 1.88 8.01 -2.39 -0.02 1.86 16 37 H 0.07 1.73 7.95 -2.39 -0.02 1.71 16 38 H 0.17 2.44 8.04 -2.91 -0.02 2.42 16 39 H 0.14 3.46 8.06 -2.91 -0.02 3.43 16 40 H 0.03 1.23 8.09 -2.38 -0.02 1.22 16 41 H 0.04 1.58 8.08 -2.39 -0.02 1.56 16 42 H 0.37 20.16 7.66 -92.71 -0.71 19.45 16 43 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 44 H 0.13 4.08 8.06 -2.91 -0.02 4.06 16 Total: -1.00 -72.70 392.30 2.35 -70.35 By element: Atomic # 1 Polarization: 29.20 SS G_CDS: -0.41 Total: 28.78 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: 6.30 Total: 1.60 kcal Atomic # 7 Polarization: -122.58 SS G_CDS: -6.25 Total: -128.83 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: -0.07 Total: -16.00 kcal Atomic # 9 Polarization: -4.18 SS G_CDS: 0.75 Total: -3.43 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -72.70 2.35 -70.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001508236913.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.667 kcal (2) G-P(sol) polarization free energy of solvation -72.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds