Wall clock time and date at job start Wed Apr 1 2020 05:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.46867 * 2 1 4 4 C 1.50702 * 109.46924 * 240.00099 * 2 1 3 5 5 O 1.21272 * 120.00125 * 261.26912 * 4 2 1 6 6 N 1.34780 * 119.99802 * 81.27082 * 4 2 1 7 7 C 1.46969 * 120.59510 * 4.38346 * 6 4 2 8 8 C 1.53806 * 108.40166 * 124.75536 * 7 6 4 9 9 N 1.46967 * 108.57778 * 49.63557 * 8 7 6 10 10 C 1.36939 * 120.59152 * 124.62103 * 9 8 7 11 11 H 1.08002 * 119.99903 * 206.76809 * 10 9 8 12 12 C 1.38808 * 119.99926 * 26.77635 * 10 9 8 13 13 N 1.31621 * 120.00095 * 15.23256 * 12 10 9 14 14 Si 1.86803 * 120.00073 * 195.22944 * 12 10 9 15 15 H 1.48502 * 109.47068 * 0.02562 * 14 12 10 16 16 H 1.48497 * 109.47001 * 119.99899 * 14 12 10 17 17 H 1.48503 * 109.47332 * 240.00145 * 14 12 10 18 18 C 1.46964 * 118.81504 * 304.65300 * 9 8 7 19 19 C 1.46962 * 120.59343 * 184.66292 * 6 4 2 20 20 N 1.46496 * 109.47243 * 120.00691 * 2 1 3 21 21 C 1.34515 * 126.74501 * 34.70196 * 20 2 1 22 22 N 1.30690 * 108.28789 * 179.89508 * 21 20 2 23 23 C 1.33957 * 109.77508 * 0.38676 * 22 21 20 24 24 C 1.48484 * 125.64428 * 179.72208 * 23 22 21 25 25 N 1.34045 * 126.67525 * 180.02562 * 24 23 22 26 26 N 1.28985 * 107.26891 * 179.97438 * 25 24 23 27 27 N 1.28727 * 108.94130 * 359.97438 * 26 25 24 28 28 H 0.97007 * 125.34203 * 179.97438 * 27 26 25 29 29 N 1.28866 * 109.31933 * 359.76415 * 27 26 25 30 30 N 1.31458 * 108.71085 * 359.76208 * 23 22 21 31 31 H 1.09000 * 109.46664 * 181.23770 * 1 2 3 32 32 H 1.08995 * 109.47096 * 301.23806 * 1 2 3 33 33 H 1.09000 * 109.47275 * 61.23904 * 1 2 3 34 34 H 1.08999 * 109.60809 * 244.54250 * 7 6 4 35 35 H 1.09004 * 109.60673 * 5.04906 * 7 6 4 36 36 H 1.08999 * 109.74165 * 289.85177 * 8 7 6 37 37 H 1.08998 * 109.53367 * 169.30347 * 8 7 6 38 38 H 0.96996 * 120.00015 * 179.97438 * 13 12 10 39 39 H 1.09005 * 109.60158 * 295.47845 * 18 9 8 40 40 H 1.09001 * 109.60962 * 174.97055 * 18 9 8 41 41 H 1.09002 * 109.61235 * 354.94161 * 19 6 4 42 42 H 1.08992 * 109.61365 * 115.46126 * 19 6 4 43 43 H 1.07997 * 125.85885 * 0.04681 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.3848 -1.8687 -1.1606 6 7 2.0899 -0.0584 -2.4087 7 6 1.7577 1.3709 -2.4897 8 6 2.9475 2.1109 -3.1240 9 7 3.3379 1.4038 -4.3518 10 6 3.3954 2.0660 -5.5491 11 1 3.2515 1.5252 -6.4728 12 6 3.6389 3.4323 -5.5754 13 7 4.1068 4.0382 -4.5048 14 14 3.3027 4.4111 -7.1305 15 1 2.7839 3.5029 -8.1847 16 1 2.2948 5.4636 -6.8447 17 1 4.5614 5.0452 -7.5983 18 6 3.6647 -0.0268 -4.2719 19 6 2.4802 -0.7655 -3.6365 20 7 2.0184 -0.6907 1.1960 21 6 1.4512 -1.7493 1.8020 22 7 2.1864 -2.0745 2.8324 23 6 3.2309 -1.2410 2.9251 24 6 4.2855 -1.2880 3.9693 25 7 5.3379 -0.4654 4.0819 26 7 6.0088 -0.8416 5.1173 27 7 5.4217 -1.8560 5.6497 28 1 5.7250 -2.3284 6.4409 29 7 4.3655 -2.1427 4.9695 30 7 3.1673 -0.3739 1.9390 31 1 -0.3633 -1.0274 0.0222 32 1 -0.3633 0.5329 0.8786 33 1 -0.3634 0.4945 -0.9009 34 1 0.8689 1.5055 -3.1062 35 1 1.5739 1.7610 -1.4885 36 1 3.7860 2.1248 -2.4277 37 1 2.6539 3.1319 -3.3674 38 1 4.2773 4.9929 -4.5233 39 1 4.5543 -0.1650 -3.6573 40 1 3.8448 -0.4175 -5.2735 41 1 2.7739 -1.7865 -3.3931 42 1 1.6418 -0.7794 -4.3329 43 1 0.5452 -2.2468 1.4891 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001602997943.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:20 Heat of formation + Delta-G solvation = 233.442093 kcal Electronic energy + Delta-G solvation = -30257.830236 eV Core-core repulsion = 25994.318329 eV Total energy + Delta-G solvation = -4263.511907 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.156 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.72306 -42.35269 -39.98221 -37.06879 -35.40863 -34.58012 -34.07164 -33.44169 -31.75541 -31.45642 -30.38369 -29.96330 -27.20008 -25.69510 -25.06330 -24.69366 -23.71574 -23.04383 -22.02775 -21.28188 -20.47540 -19.36928 -19.02149 -17.74100 -17.42203 -17.34214 -16.33429 -16.10431 -15.47258 -15.37014 -15.12648 -14.88447 -14.71831 -14.13633 -13.89034 -13.68848 -13.51290 -13.39834 -13.19862 -12.79333 -12.57711 -12.50593 -12.38612 -11.92932 -11.68994 -11.63273 -11.42256 -11.38514 -11.37521 -10.94346 -10.82711 -10.59337 -10.40309 -10.29098 -10.26686 -10.08962 -9.93926 -9.75636 -9.32212 -8.70945 -8.45357 -6.82508 -5.91889 -3.37462 0.67960 1.10919 1.60910 1.82431 2.08537 2.59134 2.98146 3.09281 3.19831 3.28828 3.37591 3.39217 3.74929 4.25138 4.31256 4.38373 4.41341 4.53366 4.79029 5.01960 5.08948 5.15156 5.20655 5.26002 5.26695 5.55158 5.62276 5.71057 5.77676 5.84523 5.94924 5.99079 6.03100 6.10239 6.18676 6.27311 6.50054 6.67443 6.77989 7.09071 7.39705 7.59463 7.66832 7.71687 7.93469 8.18453 8.27663 9.04465 9.66366 10.21645 11.15377 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.015981 B = 0.002460 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.639992 B =11378.854957 C =12271.104944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.133 3.867 3 H 0.135 0.865 4 C 0.502 3.498 5 O -0.543 6.543 6 N -0.586 5.586 7 C 0.073 3.927 8 C 0.153 3.847 9 N -0.591 5.591 10 C -0.253 4.253 11 H 0.070 0.930 12 C 0.001 3.999 13 N -0.904 5.904 14 Si 0.906 3.094 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.289 1.289 18 C 0.130 3.870 19 C 0.097 3.903 20 N -0.350 5.350 21 C 0.282 3.718 22 N -0.516 5.516 23 C 0.295 3.705 24 C 0.266 3.734 25 N -0.240 5.240 26 N -0.048 5.048 27 N -0.226 5.226 28 H 0.478 0.522 29 N -0.256 5.256 30 N -0.252 5.252 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.025 0.975 37 H 0.111 0.889 38 H 0.256 0.744 39 H 0.025 0.975 40 H 0.068 0.932 41 H 0.083 0.917 42 H 0.067 0.933 43 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.803 -9.618 16.240 20.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.027 3.973 3 H 0.153 0.847 4 C 0.286 3.714 5 O -0.421 6.421 6 N -0.317 5.317 7 C -0.051 4.051 8 C 0.026 3.974 9 N -0.314 5.314 10 C -0.383 4.383 11 H 0.088 0.912 12 C -0.197 4.197 13 N -0.548 5.548 14 Si 0.736 3.264 15 H -0.202 1.202 16 H -0.215 1.215 17 H -0.216 1.216 18 C 0.003 3.997 19 C -0.027 4.027 20 N -0.141 5.141 21 C -0.014 4.014 22 N -0.243 5.243 23 C 0.012 3.988 24 C -0.017 4.017 25 N -0.115 5.115 26 N -0.043 5.043 27 N -0.073 5.073 28 H 0.333 0.667 29 N -0.110 5.110 30 N -0.083 5.083 31 H 0.094 0.906 32 H 0.102 0.898 33 H 0.116 0.884 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.043 0.957 37 H 0.128 0.872 38 H 0.066 0.934 39 H 0.043 0.957 40 H 0.087 0.913 41 H 0.101 0.899 42 H 0.085 0.915 43 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -6.609 -9.492 16.540 20.183 hybrid contribution -0.446 0.154 -0.761 0.895 sum -7.055 -9.338 15.779 19.645 Atomic orbital electron populations 1.22147 0.89564 1.04578 1.05396 1.21468 0.96773 0.98407 0.80659 0.84702 1.20315 0.79421 0.87141 0.84510 1.90710 1.49369 1.17167 1.84858 1.48050 1.65196 1.11281 1.07213 1.22990 1.01975 0.79314 1.00835 1.21389 0.91534 0.97421 0.87037 1.44016 1.77768 1.04106 1.05505 1.19274 1.42801 0.91152 0.85047 0.91246 1.25071 0.99074 0.98121 0.97453 1.69967 1.46497 1.09886 1.28482 0.86160 0.77639 0.79992 0.82593 1.20240 1.21459 1.21634 1.21306 0.93382 0.86331 0.98656 1.22280 0.99408 0.96462 0.84552 1.50216 1.17960 1.24477 1.21461 1.25930 0.99103 0.87645 0.88744 1.70514 1.05590 1.27238 1.21002 1.19528 0.92997 0.93382 0.92923 1.21316 0.94516 0.92057 0.93821 1.76271 1.03738 1.21781 1.09685 1.79009 1.19782 1.01123 1.04389 1.47823 1.14412 1.21421 1.23633 0.66728 1.75072 1.06098 1.23451 1.06381 1.78475 1.01983 1.21969 1.05846 0.90586 0.89818 0.88444 0.91021 0.91103 0.95653 0.87154 0.93397 0.95731 0.91323 0.89904 0.91457 0.75939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.18 8.75 37.16 0.33 -0.85 16 2 C 0.13 1.60 2.92 -69.08 -0.20 1.40 16 3 H 0.14 1.59 6.29 -51.93 -0.33 1.26 16 4 C 0.50 7.84 6.93 -10.98 -0.08 7.77 16 5 O -0.54 -10.19 15.77 5.56 0.09 -10.10 16 6 N -0.59 -9.48 2.94 -172.22 -0.51 -9.98 16 7 C 0.07 1.14 6.03 -3.37 -0.02 1.12 16 8 C 0.15 3.27 5.54 -3.37 -0.02 3.26 16 9 N -0.59 -13.76 2.98 -171.77 -0.51 -14.27 16 10 C -0.25 -6.48 9.61 -15.06 -0.14 -6.62 16 11 H 0.07 1.75 7.87 -52.49 -0.41 1.33 16 12 C 0.00 0.03 4.98 -17.43 -0.09 -0.06 16 13 N -0.90 -24.68 10.94 55.49 0.61 -24.07 16 14 Si 0.91 20.51 29.58 -169.99 -5.03 15.48 16 15 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 16 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 17 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 18 C 0.13 2.62 6.67 -3.60 -0.02 2.60 16 19 C 0.10 1.64 6.60 -3.60 -0.02 1.62 16 20 N -0.35 -4.83 3.20 -57.26 -0.18 -5.01 16 21 C 0.28 3.43 11.51 -90.70 -1.04 2.38 16 22 N -0.52 -7.51 11.21 -12.37 -0.14 -7.65 16 23 C 0.29 4.68 8.08 -156.64 -1.27 3.42 16 24 C 0.27 3.92 8.31 -156.30 -1.30 2.62 16 25 N -0.24 -3.58 12.54 32.16 0.40 -3.18 16 26 N -0.05 -0.55 13.47 60.35 0.81 0.26 16 27 N -0.23 -1.90 7.90 60.35 0.48 -1.43 16 28 H 0.48 1.35 8.96 -340.37 -3.05 -1.70 16 29 N -0.26 -3.07 12.40 32.18 0.40 -2.67 16 30 N -0.25 -4.18 12.73 32.11 0.41 -3.77 16 31 H 0.08 0.48 7.14 -51.93 -0.37 0.11 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.10 0.66 7.64 -51.93 -0.40 0.26 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.07 0.88 5.34 -51.93 -0.28 0.60 16 36 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.11 2.62 5.79 -51.93 -0.30 2.32 16 38 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 1.31 7.93 -51.93 -0.41 0.90 16 41 H 0.08 1.40 6.99 -51.93 -0.36 1.04 16 42 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 43 H 0.22 1.67 7.27 -52.49 -0.38 1.29 16 LS Contribution 363.16 15.07 5.47 5.47 Total: -1.00 -35.80 363.16 -9.12 -44.92 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -7.54 Total: -2.65 kcal Atomic # 6 Polarization: 22.53 SS G_CDS: -3.88 Total: 18.65 kcal Atomic # 7 Polarization: -73.54 SS G_CDS: 1.77 Total: -71.77 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.09 Total: -10.10 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.03 Total: 15.48 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.80 -9.12 -44.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001602997943.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 278.358 kcal (2) G-P(sol) polarization free energy of solvation -35.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 242.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 233.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds