Wall clock time and date at job start Wed Apr 1 2020 05:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.46867 * 2 1 4 4 C 1.50702 * 109.46924 * 240.00099 * 2 1 3 5 5 O 1.21272 * 120.00125 * 261.26912 * 4 2 1 6 6 N 1.34780 * 119.99802 * 81.27082 * 4 2 1 7 7 C 1.46969 * 120.59510 * 4.38346 * 6 4 2 8 8 C 1.53806 * 108.40166 * 124.75536 * 7 6 4 9 9 N 1.46967 * 108.57778 * 49.63557 * 8 7 6 10 10 C 1.36939 * 120.59152 * 124.62103 * 9 8 7 11 11 H 1.08002 * 119.99903 * 206.76809 * 10 9 8 12 12 C 1.38808 * 119.99926 * 26.77635 * 10 9 8 13 13 N 1.31621 * 120.00095 * 15.23256 * 12 10 9 14 14 Si 1.86803 * 120.00073 * 195.22944 * 12 10 9 15 15 H 1.48502 * 109.47068 * 0.02562 * 14 12 10 16 16 H 1.48497 * 109.47001 * 119.99899 * 14 12 10 17 17 H 1.48503 * 109.47332 * 240.00145 * 14 12 10 18 18 C 1.46964 * 118.81504 * 304.65300 * 9 8 7 19 19 C 1.46962 * 120.59343 * 184.66292 * 6 4 2 20 20 N 1.46496 * 109.47243 * 120.00691 * 2 1 3 21 21 C 1.34515 * 126.74501 * 34.70196 * 20 2 1 22 22 N 1.30690 * 108.28789 * 179.89508 * 21 20 2 23 23 C 1.33957 * 109.77508 * 0.38676 * 22 21 20 24 24 C 1.48484 * 125.64428 * 179.72208 * 23 22 21 25 25 N 1.34045 * 126.67525 * 180.02562 * 24 23 22 26 26 N 1.28985 * 107.26891 * 179.97438 * 25 24 23 27 27 N 1.28727 * 108.94130 * 359.97438 * 26 25 24 28 28 H 0.97007 * 125.34203 * 179.97438 * 27 26 25 29 29 N 1.28866 * 109.31933 * 359.76415 * 27 26 25 30 30 N 1.31458 * 108.71085 * 359.76208 * 23 22 21 31 31 H 1.09000 * 109.46664 * 181.23770 * 1 2 3 32 32 H 1.08995 * 109.47096 * 301.23806 * 1 2 3 33 33 H 1.09000 * 109.47275 * 61.23904 * 1 2 3 34 34 H 1.08999 * 109.60809 * 244.54250 * 7 6 4 35 35 H 1.09004 * 109.60673 * 5.04906 * 7 6 4 36 36 H 1.08999 * 109.74165 * 289.85177 * 8 7 6 37 37 H 1.08998 * 109.53367 * 169.30347 * 8 7 6 38 38 H 0.96996 * 120.00015 * 179.97438 * 13 12 10 39 39 H 1.09005 * 109.60158 * 295.47845 * 18 9 8 40 40 H 1.09001 * 109.60962 * 174.97055 * 18 9 8 41 41 H 1.09002 * 109.61235 * 354.94161 * 19 6 4 42 42 H 1.08992 * 109.61365 * 115.46126 * 19 6 4 43 43 H 1.07997 * 125.85885 * 0.04681 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.3848 -1.8687 -1.1606 6 7 2.0899 -0.0584 -2.4087 7 6 1.7577 1.3709 -2.4897 8 6 2.9475 2.1109 -3.1240 9 7 3.3379 1.4038 -4.3518 10 6 3.3954 2.0660 -5.5491 11 1 3.2515 1.5252 -6.4728 12 6 3.6389 3.4323 -5.5754 13 7 4.1068 4.0382 -4.5048 14 14 3.3027 4.4111 -7.1305 15 1 2.7839 3.5029 -8.1847 16 1 2.2948 5.4636 -6.8447 17 1 4.5614 5.0452 -7.5983 18 6 3.6647 -0.0268 -4.2719 19 6 2.4802 -0.7655 -3.6365 20 7 2.0184 -0.6907 1.1960 21 6 1.4512 -1.7493 1.8020 22 7 2.1864 -2.0745 2.8324 23 6 3.2309 -1.2410 2.9251 24 6 4.2855 -1.2880 3.9693 25 7 5.3379 -0.4654 4.0819 26 7 6.0088 -0.8416 5.1173 27 7 5.4217 -1.8560 5.6497 28 1 5.7250 -2.3284 6.4409 29 7 4.3655 -2.1427 4.9695 30 7 3.1673 -0.3739 1.9390 31 1 -0.3633 -1.0274 0.0222 32 1 -0.3633 0.5329 0.8786 33 1 -0.3634 0.4945 -0.9009 34 1 0.8689 1.5055 -3.1062 35 1 1.5739 1.7610 -1.4885 36 1 3.7860 2.1248 -2.4277 37 1 2.6539 3.1319 -3.3674 38 1 4.2773 4.9929 -4.5233 39 1 4.5543 -0.1650 -3.6573 40 1 3.8448 -0.4175 -5.2735 41 1 2.7739 -1.7865 -3.3931 42 1 1.6418 -0.7794 -4.3329 43 1 0.5452 -2.2468 1.4891 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001602997943.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:19 Heat of formation + Delta-G solvation = 207.348874 kcal Electronic energy + Delta-G solvation = -30258.961723 eV Core-core repulsion = 25994.318329 eV Total energy + Delta-G solvation = -4264.643394 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.156 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -45.66452 -43.37851 -41.26081 -38.59195 -36.43307 -35.72149 -35.50507 -34.42968 -33.27333 -32.66620 -31.90680 -31.00078 -28.78632 -26.64627 -26.13286 -25.78856 -25.19448 -24.48318 -23.24929 -22.31019 -21.83391 -20.38735 -20.25506 -19.13585 -18.42935 -18.35512 -17.91851 -17.21133 -16.87058 -16.51960 -16.43229 -16.19158 -15.88157 -15.47098 -15.26412 -15.12528 -15.05160 -14.84138 -14.37074 -13.66430 -13.56650 -13.45900 -13.33475 -13.31636 -13.14715 -12.73555 -12.66115 -12.60097 -12.44590 -12.38862 -12.35833 -12.21474 -12.03030 -11.89628 -11.69914 -11.41743 -11.33105 -10.88327 -10.62457 -10.44166 -9.92414 -8.68784 -7.87378 -5.36545 -0.29495 0.10693 0.64671 0.87059 1.27860 1.44400 1.49502 1.52353 1.61737 1.90156 1.97416 2.18422 2.51566 2.76914 3.17354 3.27347 3.42209 3.54182 3.57512 3.71547 3.81887 4.11432 4.19100 4.21171 4.24819 4.34050 4.53127 4.56898 4.61135 4.69744 4.72275 4.77205 4.81995 4.92628 5.03652 5.13564 5.21452 5.47482 5.50941 5.61181 5.62780 5.66746 6.32061 6.36026 6.69947 6.92720 6.96313 7.11123 7.78289 8.30220 9.17262 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.015981 B = 0.002460 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.639992 B =11378.854957 C =12271.104944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.136 3.864 3 H 0.135 0.865 4 C 0.502 3.498 5 O -0.575 6.575 6 N -0.590 5.590 7 C 0.091 3.909 8 C 0.155 3.845 9 N -0.608 5.608 10 C -0.259 4.259 11 H 0.072 0.928 12 C -0.049 4.049 13 N -0.936 5.936 14 Si 0.970 3.030 15 H -0.266 1.266 16 H -0.286 1.286 17 H -0.299 1.299 18 C 0.129 3.871 19 C 0.108 3.892 20 N -0.356 5.356 21 C 0.293 3.707 22 N -0.534 5.534 23 C 0.287 3.713 24 C 0.245 3.755 25 N -0.276 5.276 26 N -0.046 5.046 27 N -0.188 5.188 28 H 0.500 0.500 29 N -0.253 5.253 30 N -0.295 5.295 31 H 0.091 0.909 32 H 0.105 0.895 33 H 0.110 0.890 34 H 0.090 0.910 35 H 0.107 0.893 36 H -0.010 1.010 37 H 0.087 0.913 38 H 0.252 0.748 39 H -0.001 1.001 40 H 0.074 0.926 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.283 -10.583 16.823 22.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.031 3.969 3 H 0.153 0.847 4 C 0.289 3.711 5 O -0.455 6.455 6 N -0.322 5.322 7 C -0.033 4.033 8 C 0.029 3.971 9 N -0.332 5.332 10 C -0.389 4.389 11 H 0.090 0.910 12 C -0.244 4.244 13 N -0.582 5.582 14 Si 0.798 3.202 15 H -0.191 1.191 16 H -0.212 1.212 17 H -0.227 1.227 18 C 0.003 3.997 19 C -0.015 4.015 20 N -0.146 5.146 21 C -0.002 4.002 22 N -0.263 5.263 23 C 0.003 3.997 24 C -0.038 4.038 25 N -0.150 5.150 26 N -0.041 5.041 27 N -0.041 5.041 28 H 0.361 0.639 29 N -0.108 5.108 30 N -0.126 5.126 31 H 0.110 0.890 32 H 0.124 0.876 33 H 0.129 0.871 34 H 0.108 0.892 35 H 0.125 0.875 36 H 0.008 0.992 37 H 0.105 0.895 38 H 0.061 0.939 39 H 0.017 0.983 40 H 0.093 0.907 41 H 0.102 0.898 42 H 0.103 0.897 43 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges -9.096 -10.477 17.145 22.056 hybrid contribution 0.440 0.339 -0.862 1.026 sum -8.656 -10.138 16.283 21.044 Atomic orbital electron populations 1.22273 0.85395 1.06297 1.07127 1.21676 0.99664 0.97304 0.78292 0.84735 1.20934 0.78278 0.86840 0.85064 1.90695 1.50645 1.18809 1.85372 1.48079 1.65374 1.11337 1.07371 1.22772 0.99426 0.78368 1.02686 1.21234 0.92560 0.97227 0.86092 1.44292 1.78239 1.05176 1.05448 1.19585 1.41761 0.91500 0.86061 0.90996 1.25783 0.99469 0.99081 1.00093 1.70136 1.48026 1.09710 1.30322 0.85169 0.76823 0.78565 0.79604 1.19063 1.21206 1.22670 1.21374 0.94027 0.85343 0.98981 1.22049 0.98423 0.95858 0.85212 1.50319 1.17445 1.25176 1.21690 1.26826 0.99469 0.86528 0.87396 1.70520 1.05801 1.27610 1.22323 1.19791 0.93489 0.93401 0.92986 1.21386 0.94829 0.92906 0.94634 1.76249 1.04546 1.23057 1.11124 1.78929 1.19521 1.01726 1.03956 1.47874 1.12830 1.20110 1.23273 0.63891 1.75020 1.06868 1.22921 1.05991 1.78383 1.03858 1.23404 1.06944 0.88971 0.87589 0.87119 0.89152 0.87513 0.99200 0.89539 0.93913 0.98307 0.90719 0.89789 0.89661 0.71558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 8.75 71.98 0.63 -0.99 16 2 C 0.14 2.96 2.92 44.25 0.13 3.09 16 3 H 0.14 2.92 6.29 -2.39 -0.02 2.90 16 4 C 0.50 14.86 6.93 87.66 0.61 15.46 16 5 O -0.58 -20.88 15.77 -3.01 -0.05 -20.93 16 6 N -0.59 -18.19 2.94 -817.16 -2.40 -20.59 16 7 C 0.09 2.69 6.03 86.56 0.52 3.21 16 8 C 0.16 6.76 5.54 86.56 0.48 7.24 16 9 N -0.61 -28.64 2.98 -697.34 -2.08 -30.72 16 10 C -0.26 -13.31 9.61 84.03 0.81 -12.51 16 11 H 0.07 3.59 7.87 -2.91 -0.02 3.56 16 12 C -0.05 -2.58 4.98 84.86 0.42 -2.16 16 13 N -0.94 -52.46 10.94 21.65 0.24 -52.22 16 14 Si 0.97 42.40 29.58 68.60 2.03 44.43 16 15 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 16 H -0.29 -12.27 7.11 99.48 0.71 -11.57 16 17 H -0.30 -13.46 7.11 99.48 0.71 -12.76 16 18 C 0.13 5.25 6.67 86.42 0.58 5.83 16 19 C 0.11 3.56 6.60 86.42 0.57 4.13 16 20 N -0.36 -9.26 3.20 -335.06 -1.07 -10.34 16 21 C 0.29 6.46 11.51 180.37 2.08 8.53 16 22 N -0.53 -14.95 11.21 -193.05 -2.17 -17.12 16 23 C 0.29 9.09 8.08 137.51 1.11 10.21 16 24 C 0.25 7.25 8.31 137.39 1.14 8.40 16 25 N -0.28 -8.34 12.54 -52.17 -0.65 -8.99 16 26 N -0.05 -1.05 13.47 37.02 0.50 -0.55 16 27 N -0.19 -2.92 7.90 37.02 0.29 -2.63 16 28 H 0.50 1.82 8.96 -347.53 -3.12 -1.30 16 29 N -0.25 -5.84 12.40 -52.11 -0.65 -6.48 16 30 N -0.29 -9.81 12.73 -52.32 -0.67 -10.48 16 31 H 0.09 0.72 7.14 -2.39 -0.02 0.71 16 32 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.11 0.96 7.64 -2.39 -0.02 0.94 16 34 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 35 H 0.11 2.39 5.34 -2.38 -0.01 2.38 16 36 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 37 H 0.09 4.21 5.79 -2.39 -0.01 4.19 16 38 H 0.25 13.69 8.31 -92.71 -0.77 12.92 16 39 H 0.00 -0.05 8.14 -2.38 -0.02 -0.07 16 40 H 0.07 2.87 7.93 -2.39 -0.02 2.85 16 41 H 0.08 2.76 6.99 -2.39 -0.02 2.75 16 42 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 43 H 0.27 2.93 7.27 -2.91 -0.02 2.91 16 Total: -1.00 -81.36 363.16 0.38 -80.98 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -2.02 Total: 5.20 kcal Atomic # 6 Polarization: 41.37 SS G_CDS: 9.07 Total: 50.44 kcal Atomic # 7 Polarization: -151.46 SS G_CDS: -8.66 Total: -160.11 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: -0.05 Total: -20.93 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Total: -81.36 0.38 -80.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001602997943.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 288.328 kcal (2) G-P(sol) polarization free energy of solvation -81.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 206.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 207.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds