Wall clock time and date at job start Wed Apr 1 2020 05:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.46876 * 2 1 4 4 C 1.50697 * 109.46811 * 119.99990 * 2 1 3 5 5 O 1.21283 * 120.00288 * 94.71886 * 4 2 1 6 6 N 1.34773 * 120.00100 * 274.71251 * 4 2 1 7 7 C 1.46968 * 120.59490 * 4.80650 * 6 4 2 8 8 C 1.53818 * 108.39387 * 124.75489 * 7 6 4 9 9 N 1.46964 * 108.57790 * 49.64306 * 8 7 6 10 10 C 1.36940 * 120.59317 * 124.66515 * 9 8 7 11 11 H 1.08001 * 119.99545 * 212.03948 * 10 9 8 12 12 C 1.38803 * 120.00152 * 32.03863 * 10 9 8 13 13 N 1.31623 * 119.99942 * 10.24403 * 12 10 9 14 14 Si 1.86799 * 120.00200 * 190.24488 * 12 10 9 15 15 H 1.48502 * 109.47235 * 60.00232 * 14 12 10 16 16 H 1.48500 * 109.47207 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.47024 * 299.99858 * 14 12 10 18 18 C 1.46971 * 118.81267 * 304.64466 * 9 8 7 19 19 C 1.46964 * 120.59405 * 185.08974 * 6 4 2 20 20 N 1.46495 * 109.47004 * 240.00027 * 2 1 3 21 21 C 1.34524 * 126.74568 * 324.99920 * 20 2 1 22 22 N 1.30679 * 108.28534 * 179.97438 * 21 20 2 23 23 C 1.33958 * 109.78602 * 0.02562 * 22 21 20 24 24 C 1.48479 * 125.65024 * 180.02562 * 23 22 21 25 25 N 1.34043 * 126.67366 * 180.02562 * 24 23 22 26 26 N 1.28983 * 107.26685 * 179.97438 * 25 24 23 27 27 N 1.28729 * 108.94555 * 359.97438 * 26 25 24 28 28 H 0.96999 * 125.34154 * 180.02562 * 27 26 25 29 29 N 1.28875 * 109.31199 * 359.97438 * 27 26 25 30 30 N 1.31473 * 108.70491 * 0.26315 * 23 22 21 31 31 H 1.09000 * 109.47274 * 295.20450 * 1 2 3 32 32 H 1.09005 * 109.47260 * 55.20068 * 1 2 3 33 33 H 1.09000 * 109.47363 * 175.20280 * 1 2 3 34 34 H 1.08996 * 109.61083 * 244.53835 * 7 6 4 35 35 H 1.09000 * 109.60737 * 5.05728 * 7 6 4 36 36 H 1.08988 * 109.74580 * 289.85220 * 8 7 6 37 37 H 1.09001 * 109.52863 * 169.30537 * 8 7 6 38 38 H 0.97003 * 120.00087 * 179.97438 * 13 12 10 39 39 H 1.09000 * 109.60440 * 295.47807 * 18 9 8 40 40 H 1.08994 * 109.74945 * 175.05625 * 18 9 8 41 41 H 1.09001 * 109.60996 * 354.94635 * 19 6 4 42 42 H 1.09004 * 109.61263 * 115.45881 * 19 6 4 43 43 H 1.07995 * 125.85490 * 0.02562 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 1.2305 5 8 2.3158 -1.8884 1.1773 6 7 2.1664 -0.0367 2.3900 7 6 1.7286 1.3622 2.4973 8 6 0.7369 1.4719 3.6679 9 7 1.3293 0.8228 4.8459 10 6 1.4656 1.5074 6.0241 11 1 2.2940 1.2901 6.6820 12 6 0.5392 2.4805 6.3725 13 7 -0.5731 2.6082 5.6804 14 14 0.8710 3.6090 7.8237 15 1 2.1204 4.3739 7.5805 16 1 -0.2640 4.5527 7.9865 17 1 1.0199 2.7970 9.0582 18 6 1.7724 -0.5743 4.7370 19 6 2.7588 -0.6858 3.5679 20 7 2.0183 -0.6906 -1.1961 21 6 1.4540 -1.7526 -1.7990 22 7 2.1865 -2.0745 -2.8323 23 6 3.2312 -1.2412 -2.9249 24 6 4.2860 -1.2884 -3.9688 25 7 5.3390 -0.4666 -4.0807 26 7 6.0104 -0.8434 -5.1155 27 7 5.4237 -1.8581 -5.6477 28 1 5.7274 -2.3309 -6.4383 29 7 4.3700 -2.1478 -4.9645 30 7 3.1707 -0.3777 -1.9353 31 1 -0.3634 0.4376 0.9298 32 1 -0.3634 0.5865 -0.8439 33 1 -0.3634 -1.0240 -0.0859 34 1 2.5910 2.0021 2.6837 35 1 1.2389 1.6642 1.5715 36 1 -0.1971 0.9744 3.4072 37 1 0.5459 2.5226 3.8865 38 1 -1.2207 3.2880 5.9242 39 1 0.9120 -1.2175 4.5523 40 1 2.2643 -0.8777 5.6610 41 1 2.9497 -1.7364 3.3494 42 1 3.6930 -0.1882 3.8288 43 1 0.5503 -2.2527 -1.4837 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001602997944.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:25 Heat of formation + Delta-G solvation = 230.239711 kcal Electronic energy + Delta-G solvation = -30137.875156 eV Core-core repulsion = 25874.224383 eV Total energy + Delta-G solvation = -4263.650773 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.156 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.78489 -42.38149 -39.98959 -37.06756 -35.41764 -34.63367 -34.07214 -33.49127 -31.77803 -31.47163 -30.46747 -29.90481 -27.24742 -25.65475 -25.10135 -24.71269 -23.74033 -23.05090 -22.01968 -21.32540 -20.58908 -19.42144 -18.94820 -17.73528 -17.47890 -17.34440 -16.39345 -16.13555 -15.52381 -15.29117 -15.01054 -14.96581 -14.74943 -14.18806 -13.91690 -13.72629 -13.66303 -13.44053 -13.05911 -12.69754 -12.57786 -12.52142 -12.37523 -11.90658 -11.74211 -11.62406 -11.47794 -11.44017 -11.38568 -10.93810 -10.86783 -10.62996 -10.43875 -10.32497 -10.29916 -10.17536 -9.96972 -9.79484 -9.34201 -8.70577 -8.46366 -6.78444 -5.96073 -3.46442 0.62426 1.04898 1.56774 1.78545 2.03868 2.59446 2.93883 3.04984 3.20423 3.28919 3.34725 3.35908 3.70505 4.25743 4.32522 4.36330 4.41332 4.56734 4.75409 5.01073 5.10237 5.15647 5.23298 5.24136 5.29630 5.57171 5.67811 5.73309 5.77005 5.82031 5.95787 5.97942 6.04022 6.05203 6.16410 6.26435 6.48063 6.65878 6.76026 7.03783 7.32803 7.59128 7.64951 7.67874 7.87782 8.18185 8.28268 9.02543 9.62334 10.20145 11.11611 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.024705 B = 0.002146 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.106664 B =13046.854023 C =13255.594942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.137 3.863 3 H 0.132 0.868 4 C 0.502 3.498 5 O -0.543 6.543 6 N -0.585 5.585 7 C 0.070 3.930 8 C 0.160 3.840 9 N -0.590 5.590 10 C -0.258 4.258 11 H 0.066 0.934 12 C 0.007 3.993 13 N -0.905 5.905 14 Si 0.908 3.092 15 H -0.282 1.282 16 H -0.289 1.289 17 H -0.281 1.281 18 C 0.132 3.868 19 C 0.096 3.904 20 N -0.351 5.351 21 C 0.286 3.714 22 N -0.516 5.516 23 C 0.295 3.705 24 C 0.266 3.734 25 N -0.242 5.242 26 N -0.048 5.048 27 N -0.225 5.225 28 H 0.478 0.522 29 N -0.255 5.255 30 N -0.258 5.258 31 H 0.102 0.898 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.026 0.974 37 H 0.104 0.896 38 H 0.257 0.743 39 H 0.025 0.975 40 H 0.068 0.932 41 H 0.083 0.917 42 H 0.066 0.934 43 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.968 -6.034 -19.119 20.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.030 3.970 3 H 0.150 0.850 4 C 0.286 3.714 5 O -0.421 6.421 6 N -0.317 5.317 7 C -0.054 4.054 8 C 0.033 3.967 9 N -0.313 5.313 10 C -0.387 4.387 11 H 0.084 0.916 12 C -0.192 4.192 13 N -0.549 5.549 14 Si 0.737 3.263 15 H -0.208 1.208 16 H -0.215 1.215 17 H -0.208 1.208 18 C 0.005 3.995 19 C -0.028 4.028 20 N -0.142 5.142 21 C -0.010 4.010 22 N -0.244 5.244 23 C 0.012 3.988 24 C -0.017 4.017 25 N -0.117 5.117 26 N -0.044 5.044 27 N -0.072 5.072 28 H 0.333 0.667 29 N -0.109 5.109 30 N -0.089 5.089 31 H 0.121 0.879 32 H 0.102 0.898 33 H 0.095 0.905 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.044 0.956 37 H 0.122 0.878 38 H 0.067 0.933 39 H 0.043 0.957 40 H 0.087 0.913 41 H 0.101 0.899 42 H 0.084 0.916 43 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 4.918 -5.975 -19.359 20.849 hybrid contribution -0.318 0.174 0.767 0.848 sum 4.600 -5.801 -18.592 20.012 Atomic orbital electron populations 1.22224 0.89317 1.04736 1.05829 1.21445 0.97066 0.97956 0.80516 0.85039 1.20322 0.79232 0.87379 0.84436 1.90709 1.51498 1.15316 1.84618 1.48025 1.59520 1.13961 1.10210 1.23021 1.00619 0.80287 1.01434 1.21290 0.90870 1.01166 0.83371 1.43924 1.72129 1.06634 1.08615 1.19144 1.05837 1.16470 0.97248 0.91612 1.25195 0.94674 1.01085 0.98244 1.69908 1.08358 1.35259 1.41395 0.86291 0.77258 0.80363 0.82350 1.20833 1.21513 1.20760 1.21305 0.95047 0.87872 0.95253 1.22298 0.97067 0.97928 0.85516 1.50257 1.17812 1.24433 1.21655 1.25973 0.99099 0.87389 0.88572 1.70526 1.05717 1.27261 1.20878 1.19525 0.92959 0.93505 0.92803 1.21316 0.94511 0.91908 0.93960 1.76243 1.03705 1.21928 1.09808 1.78993 1.19763 1.01256 1.04354 1.47825 1.14567 1.21292 1.23560 0.66690 1.75087 1.06147 1.23254 1.06374 1.78413 1.01986 1.22350 1.06125 0.87924 0.89817 0.90475 0.91154 0.91074 0.95614 0.87777 0.93293 0.95699 0.91339 0.89889 0.91554 0.75812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.43 8.65 37.16 0.32 -1.11 16 2 C 0.14 1.64 2.89 -69.09 -0.20 1.45 16 3 H 0.13 1.45 6.69 -51.93 -0.35 1.11 16 4 C 0.50 7.87 6.90 -10.99 -0.08 7.79 16 5 O -0.54 -10.15 15.79 5.56 0.09 -10.06 16 6 N -0.59 -9.55 2.94 -172.21 -0.51 -10.05 16 7 C 0.07 1.10 6.11 -3.36 -0.02 1.08 16 8 C 0.16 3.24 5.47 -3.36 -0.02 3.22 16 9 N -0.59 -13.36 2.96 -171.77 -0.51 -13.87 16 10 C -0.26 -6.48 9.58 -15.06 -0.14 -6.63 16 11 H 0.07 1.64 7.85 -52.49 -0.41 1.23 16 12 C 0.01 0.18 5.06 -17.43 -0.09 0.09 16 13 N -0.91 -23.97 11.04 55.49 0.61 -23.35 16 14 Si 0.91 20.30 29.57 -169.99 -5.03 15.27 16 15 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 16 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 17 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 18 C 0.13 2.57 6.67 -3.59 -0.02 2.55 16 19 C 0.10 1.64 6.60 -3.60 -0.02 1.62 16 20 N -0.35 -4.72 3.25 -57.26 -0.19 -4.91 16 21 C 0.29 3.49 11.46 -90.70 -1.04 2.46 16 22 N -0.52 -7.39 11.21 -12.37 -0.14 -7.53 16 23 C 0.30 4.49 8.08 -156.63 -1.27 3.23 16 24 C 0.27 3.72 8.31 -156.31 -1.30 2.42 16 25 N -0.24 -3.36 12.54 32.16 0.40 -2.95 16 26 N -0.05 -0.52 13.47 60.35 0.81 0.30 16 27 N -0.23 -1.74 7.90 60.35 0.48 -1.27 16 28 H 0.48 1.06 8.96 -340.37 -3.05 -1.99 16 29 N -0.25 -2.90 12.40 32.17 0.40 -2.50 16 30 N -0.26 -4.04 12.74 32.11 0.41 -3.63 16 31 H 0.10 0.96 7.23 -51.93 -0.38 0.59 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.61 6.97 -51.93 -0.36 0.24 16 34 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.07 0.86 4.91 -51.93 -0.25 0.61 16 36 H 0.03 0.54 8.14 -51.94 -0.42 0.12 16 37 H 0.10 2.38 6.05 -51.93 -0.31 2.06 16 38 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 39 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 1.29 7.94 -51.93 -0.41 0.88 16 41 H 0.08 1.42 6.99 -51.93 -0.36 1.05 16 42 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.23 1.80 7.18 -52.49 -0.38 1.43 16 LS Contribution 362.67 15.07 5.47 5.47 Total: -1.00 -34.46 362.67 -9.09 -43.55 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -7.52 Total: -2.63 kcal Atomic # 6 Polarization: 22.05 SS G_CDS: -3.88 Total: 18.17 kcal Atomic # 7 Polarization: -71.54 SS G_CDS: 1.77 Total: -69.77 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.09 Total: -10.06 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.03 Total: 15.27 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.46 -9.09 -43.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001602997944.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 273.789 kcal (2) G-P(sol) polarization free energy of solvation -34.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 239.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 230.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds