Wall clock time and date at job start Wed Apr 1 2020 04:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.47097 * 2 1 4 4 C 1.52995 * 109.46855 * 119.99682 * 2 1 3 5 5 N 1.46504 * 109.47227 * 175.00524 * 4 2 1 6 6 C 1.46770 * 124.34743 * 270.00149 * 5 4 2 7 7 C 1.54480 * 105.47103 * 197.03506 * 6 5 4 8 8 C 1.54782 * 101.69489 * 334.38894 * 7 6 5 9 9 C 1.34413 * 124.35149 * 90.02462 * 5 4 2 10 10 O 1.21283 * 124.94573 * 359.53045 * 9 5 4 11 11 N 1.46501 * 109.47369 * 239.99680 * 2 1 3 12 12 C 1.34780 * 119.99641 * 85.00065 * 11 2 1 13 13 O 1.21591 * 120.00319 * 0.02562 * 12 11 2 14 14 N 1.34777 * 119.99692 * 179.97438 * 12 11 2 15 15 C 1.40025 * 119.99766 * 175.49456 * 14 12 11 16 16 C 1.38916 * 120.00023 * 214.85060 * 15 14 12 17 17 C 1.38003 * 119.99796 * 179.79332 * 16 15 14 18 18 C 1.38900 * 120.00138 * 0.46049 * 17 16 15 19 19 O 1.35784 * 119.99931 * 179.76582 * 18 17 16 20 20 C 1.34815 * 117.00342 * 185.36535 * 19 18 17 21 21 H 1.08004 * 119.99557 * 354.96782 * 20 19 18 22 22 C 1.38623 * 120.00049 * 174.96765 * 20 19 18 23 23 N 1.31576 * 120.00303 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99905 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47340 * 89.99710 * 24 22 20 26 26 H 1.48501 * 109.47319 * 209.99830 * 24 22 20 27 27 H 1.48504 * 109.47017 * 329.99889 * 24 22 20 28 28 C 1.38901 * 120.00295 * 359.79518 * 18 17 16 29 29 C 1.38005 * 120.00120 * 359.97296 * 28 18 17 30 30 H 1.09005 * 109.47097 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47834 * 300.00281 * 1 2 3 32 32 H 1.09004 * 109.46774 * 60.00598 * 1 2 3 33 33 H 1.09000 * 109.47281 * 55.00436 * 4 2 1 34 34 H 1.09005 * 109.47240 * 295.00018 * 4 2 1 35 35 H 1.08997 * 110.24253 * 316.03951 * 6 5 4 36 36 H 1.08997 * 110.24482 * 77.94659 * 6 5 4 37 37 H 1.09002 * 110.96797 * 92.70640 * 7 6 5 38 38 H 1.09001 * 110.96762 * 216.46318 * 7 6 5 39 39 H 1.08998 * 110.61772 * 266.40535 * 8 7 6 40 40 H 1.09000 * 110.42428 * 143.70721 * 8 7 6 41 41 H 0.96993 * 120.00179 * 264.99792 * 11 2 1 42 42 H 0.97001 * 119.99912 * 355.49000 * 14 12 11 43 43 H 1.07998 * 119.99483 * 0.02562 * 16 15 14 44 44 H 1.08002 * 119.99964 * 180.23411 * 17 16 15 45 45 H 0.97004 * 120.00059 * 180.02562 * 23 22 20 46 46 H 1.08002 * 119.99773 * 179.97438 * 28 18 17 47 47 H 1.07998 * 119.99965 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.8262 1.1907 6 6 4.2258 -1.9487 0.5845 7 6 5.6673 -1.8505 1.1311 8 6 5.7779 -0.3411 1.4553 9 6 4.3470 0.0926 1.6857 10 8 4.0128 1.1223 2.2326 11 7 2.0184 -0.6907 -1.1961 12 6 2.1471 -0.0183 -2.3571 13 8 1.8583 1.1616 -2.4117 14 7 2.5969 -0.6536 -3.4574 15 6 2.6415 0.0188 -4.6849 16 6 2.3868 -0.6703 -5.8639 17 6 2.4266 -0.0067 -7.0732 18 6 2.7307 1.3480 -7.1124 19 8 2.7745 1.9998 -8.3028 20 6 3.1834 3.2843 -8.2827 21 1 3.3799 3.7736 -7.3401 22 6 3.3517 3.9768 -9.4716 23 7 3.1127 3.3805 -10.6199 24 14 3.9190 5.7564 -9.4437 25 1 5.4024 5.8040 -9.4946 26 1 3.3602 6.4726 -10.6185 27 1 3.4454 6.4074 -8.1958 28 6 2.9906 2.0359 -5.9341 29 6 2.9461 1.3735 -4.7242 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.6053 -1.7197 1.2952 34 1 1.7515 -0.1582 2.1370 35 1 3.7733 -2.8948 0.8815 36 1 4.2256 -1.8555 -0.5014 37 1 5.7858 -2.4559 2.0298 38 1 6.3933 -2.1380 0.3706 39 1 6.2103 0.2013 0.6145 40 1 6.3726 -0.1880 2.3558 41 1 2.2491 -1.6317 -1.1525 42 1 2.8898 -1.5764 -3.3989 43 1 2.1540 -1.7245 -5.8336 44 1 2.2248 -0.5416 -7.9896 45 1 3.2309 3.8650 -11.4519 46 1 3.2274 3.0892 -5.9647 47 1 3.1486 1.9083 -3.8080 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645533255.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:24 Heat of formation + Delta-G solvation = -53.542473 kcal Electronic energy + Delta-G solvation = -30076.437178 eV Core-core repulsion = 25839.435528 eV Total energy + Delta-G solvation = -4237.001650 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.93497 -40.19338 -38.78726 -37.18973 -36.60406 -35.74956 -33.97801 -32.76516 -32.12466 -30.77228 -30.15187 -27.99937 -27.64487 -26.63080 -25.23869 -22.95125 -22.37719 -22.05917 -21.20486 -20.46046 -19.80762 -18.59947 -17.88795 -17.46315 -17.18699 -16.92054 -16.41071 -15.84499 -15.43279 -15.16543 -14.65948 -14.47390 -14.23885 -14.14147 -13.94154 -13.76716 -13.58023 -13.52849 -13.32060 -13.14159 -12.82873 -12.72317 -12.61653 -12.45812 -12.13415 -11.94801 -11.72268 -11.56962 -11.49462 -11.48016 -11.33132 -10.98458 -10.73016 -10.40375 -10.11651 -9.93763 -9.65461 -9.37606 -9.16167 -8.97571 -8.65274 -8.16326 -6.88628 -6.40977 -3.98488 2.17546 2.27289 2.28548 2.51947 2.72332 3.16009 3.18077 3.22926 3.35451 3.93331 3.99202 4.01288 4.20360 4.31162 4.44338 4.55664 4.61827 4.66640 4.92136 4.99375 5.06986 5.13237 5.14530 5.21571 5.25415 5.29398 5.37649 5.45168 5.50313 5.69210 5.72544 5.80577 5.94486 6.14845 6.17125 6.21729 6.30622 6.40863 6.68660 6.71652 6.77370 6.99557 7.14459 7.21997 7.37989 7.48675 7.83010 7.83676 8.03697 8.06304 8.70023 9.05160 9.74829 10.77093 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015026 B = 0.002178 C = 0.002107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.952809 B =12855.149937 C =13288.849260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.144 3.856 3 H 0.094 0.906 4 C 0.119 3.881 5 N -0.617 5.617 6 C 0.099 3.901 7 C -0.131 4.131 8 C -0.156 4.156 9 C 0.517 3.483 10 O -0.529 6.529 11 N -0.741 5.741 12 C 0.699 3.301 13 O -0.571 6.571 14 N -0.675 5.675 15 C 0.053 3.947 16 C -0.095 4.095 17 C -0.178 4.178 18 C 0.145 3.855 19 O -0.178 6.178 20 C -0.389 4.389 21 H 0.092 0.908 22 C 0.039 3.961 23 N -0.864 5.864 24 Si 0.940 3.060 25 H -0.273 1.273 26 H -0.278 1.278 27 H -0.267 1.267 28 C -0.219 4.219 29 C -0.064 4.064 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.084 0.916 34 H 0.098 0.902 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.106 0.894 40 H 0.101 0.899 41 H 0.389 0.611 42 H 0.395 0.605 43 H 0.113 0.887 44 H 0.121 0.879 45 H 0.269 0.731 46 H 0.130 0.870 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.099 -16.429 24.304 29.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.037 3.963 3 H 0.112 0.888 4 C -0.003 4.003 5 N -0.352 5.352 6 C -0.024 4.024 7 C -0.169 4.169 8 C -0.197 4.197 9 C 0.305 3.695 10 O -0.405 6.405 11 N -0.398 5.398 12 C 0.400 3.600 13 O -0.447 6.447 14 N -0.322 5.322 15 C -0.040 4.040 16 C -0.116 4.116 17 C -0.198 4.198 18 C 0.091 3.909 19 O -0.082 6.082 20 C -0.466 4.466 21 H 0.109 0.891 22 C -0.165 4.165 23 N -0.500 5.500 24 Si 0.765 3.235 25 H -0.199 1.199 26 H -0.203 1.203 27 H -0.191 1.191 28 C -0.239 4.239 29 C -0.084 4.084 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.103 0.897 34 H 0.116 0.884 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.101 0.899 38 H 0.110 0.890 39 H 0.124 0.876 40 H 0.119 0.881 41 H 0.223 0.777 42 H 0.229 0.771 43 H 0.131 0.869 44 H 0.139 0.861 45 H 0.079 0.921 46 H 0.147 0.853 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 1.503 -14.773 24.101 28.308 hybrid contribution 0.447 -0.120 -0.018 0.463 sum 1.950 -14.893 24.083 28.383 Atomic orbital electron populations 1.22148 0.94543 1.02154 1.03299 1.21248 0.94173 0.98129 0.82754 0.88838 1.21782 0.78420 1.01783 0.98333 1.48194 1.05819 1.22682 1.58481 1.22161 0.92394 0.89620 0.98189 1.22612 0.96058 0.95676 1.02543 1.22374 0.95160 0.97115 1.05007 1.20945 0.88679 0.82780 0.77080 1.90749 1.82126 1.24450 1.43145 1.45153 1.72531 1.13073 1.09027 1.15965 0.78478 0.85358 0.80210 1.90949 1.56120 1.13932 1.83742 1.42284 1.67569 1.15615 1.06781 1.17022 1.11251 0.92816 0.82923 1.20308 1.01692 0.98667 0.90919 1.19962 1.10219 0.92261 0.97374 1.19404 0.93381 0.91562 0.86522 1.83972 1.73594 1.25850 1.24739 1.21332 1.45874 0.84780 0.94593 0.89052 1.25268 0.96907 1.00204 0.94138 1.70048 1.45304 1.37167 0.97438 0.85724 0.78927 0.80463 0.78426 1.19897 1.20289 1.19136 1.21114 1.10085 1.01145 0.91590 1.20880 0.96805 0.92970 0.97722 0.92448 0.91465 0.91196 0.89732 0.88365 0.90214 0.91047 0.89894 0.88988 0.87600 0.88053 0.77725 0.77114 0.86885 0.86116 0.92090 0.85279 0.85646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.40 9.48 37.16 0.35 -1.04 16 2 C 0.14 1.35 2.88 -67.93 -0.20 1.15 16 3 H 0.09 1.26 7.58 -51.93 -0.39 0.87 16 4 C 0.12 0.80 5.50 -4.04 -0.02 0.77 16 5 N -0.62 -4.49 2.75 -172.41 -0.47 -4.97 16 6 C 0.10 0.40 6.51 -3.12 -0.02 0.38 16 7 C -0.13 -0.46 7.19 -25.02 -0.18 -0.64 16 8 C -0.16 -1.01 6.87 -26.66 -0.18 -1.19 16 9 C 0.52 5.28 8.02 -10.86 -0.09 5.20 16 10 O -0.53 -7.83 17.60 5.56 0.10 -7.73 16 11 N -0.74 -6.89 4.38 -58.68 -0.26 -7.15 16 12 C 0.70 9.96 8.37 -86.91 -0.73 9.23 16 13 O -0.57 -10.99 13.44 5.29 0.07 -10.92 16 14 N -0.68 -8.95 5.35 -14.18 -0.08 -9.03 16 15 C 0.05 0.94 6.30 -83.61 -0.53 0.41 16 16 C -0.10 -1.65 9.96 -39.42 -0.39 -2.04 16 17 C -0.18 -3.72 9.98 -39.42 -0.39 -4.12 16 18 C 0.15 3.57 6.65 -39.09 -0.26 3.31 16 19 O -0.18 -5.14 9.76 -0.01 0.00 -5.14 16 20 C -0.39 -11.11 9.48 30.87 0.29 -10.81 16 21 H 0.09 2.44 5.20 -52.48 -0.27 2.17 16 22 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 23 N -0.86 -25.62 13.67 55.48 0.76 -24.86 16 24 Si 0.94 21.03 29.55 -169.99 -5.02 16.00 16 25 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 26 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 27 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 28 C -0.22 -5.07 9.16 -39.42 -0.36 -5.43 16 29 C -0.06 -1.32 8.69 -39.42 -0.34 -1.66 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.10 0.72 7.93 -51.93 -0.41 0.31 16 35 H 0.08 0.16 8.14 -51.93 -0.42 -0.27 16 36 H 0.07 0.29 7.08 -51.93 -0.37 -0.08 16 37 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 38 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 39 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.39 2.29 7.18 -40.82 -0.29 1.99 16 42 H 0.40 3.57 8.84 -40.82 -0.36 3.21 16 43 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 44 H 0.12 2.39 8.06 -52.49 -0.42 1.97 16 45 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 46 H 0.13 3.02 5.63 -52.49 -0.30 2.73 16 47 H 0.13 2.64 6.22 -52.49 -0.33 2.31 16 LS Contribution 391.71 15.07 5.90 5.90 Total: -1.00 -37.70 391.71 -8.65 -46.35 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -6.51 Total: 7.03 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: -3.14 Total: -5.50 kcal Atomic # 7 Polarization: -45.95 SS G_CDS: -0.05 Total: -46.00 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: 0.17 Total: -23.79 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -37.70 -8.65 -46.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645533255.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.196 kcal (2) G-P(sol) polarization free energy of solvation -37.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds