Wall clock time and date at job start Wed Apr 1 2020 05:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 109.46943 * 2 1 4 4 C 1.45751 * 117.94519 * 89.99903 * 3 2 1 5 5 C 1.52918 * 110.32025 * 161.00781 * 4 3 2 6 6 C 1.52892 * 108.91326 * 50.80857 * 5 4 3 7 7 C 1.53075 * 108.34271 * 292.38390 * 6 5 4 8 8 H 1.08998 * 109.39980 * 288.74424 * 7 6 5 9 9 N 1.46492 * 109.33231 * 168.95317 * 7 6 5 10 10 C 1.34778 * 120.00146 * 154.61573 * 9 7 6 11 11 O 1.21586 * 119.99666 * 0.02562 * 10 9 7 12 12 N 1.34780 * 120.00133 * 179.97438 * 10 9 7 13 13 C 1.40023 * 119.99791 * 174.74099 * 12 10 9 14 14 C 1.38920 * 120.00193 * 326.16953 * 13 12 10 15 15 C 1.38010 * 119.99816 * 179.74794 * 14 13 12 16 16 C 1.38901 * 119.99798 * 0.55139 * 15 14 13 17 17 O 1.35781 * 119.99575 * 179.72327 * 16 15 14 18 18 C 1.34822 * 117.00163 * 185.89005 * 17 16 15 19 19 H 1.07995 * 119.99505 * 5.42096 * 18 17 16 20 20 C 1.38629 * 120.00068 * 185.41683 * 18 17 16 21 21 N 1.31575 * 119.99564 * 179.97438 * 20 18 17 22 22 Si 1.86793 * 120.00157 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47165 * 90.00043 * 22 20 18 24 24 H 1.48500 * 109.47454 * 209.99901 * 22 20 18 25 25 H 1.48498 * 109.47198 * 330.00241 * 22 20 18 26 26 C 1.38903 * 120.00444 * 359.70520 * 16 15 14 27 27 C 1.38004 * 120.00205 * 0.02562 * 26 16 15 28 28 C 1.33348 * 117.94306 * 269.98009 * 3 2 1 29 29 O 1.21282 * 118.24985 * 2.26541 * 28 3 2 30 30 H 1.09000 * 109.47286 * 60.00295 * 1 2 3 31 31 H 1.09002 * 109.47043 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47378 * 299.99996 * 1 2 3 33 33 H 1.09002 * 109.47378 * 240.00003 * 2 1 3 34 34 H 1.09000 * 109.47286 * 119.99705 * 2 1 3 35 35 H 1.08997 * 109.30103 * 281.21189 * 4 3 2 36 36 H 1.08993 * 109.30081 * 40.79926 * 4 3 2 37 37 H 1.08999 * 109.60982 * 170.40548 * 5 4 3 38 38 H 1.09003 * 109.60711 * 290.89423 * 5 4 3 39 39 H 1.09006 * 109.74221 * 172.66713 * 6 5 4 40 40 H 1.09000 * 109.69400 * 52.07768 * 6 5 4 41 41 H 0.97007 * 120.00367 * 334.61976 * 9 7 6 42 42 H 0.96999 * 120.00037 * 354.74479 * 12 10 9 43 43 H 1.08003 * 119.99989 * 0.02576 * 14 13 12 44 44 H 1.07992 * 119.99693 * 180.28339 * 15 14 13 45 45 H 0.97006 * 119.99488 * 179.97438 * 21 20 18 46 46 H 1.08010 * 119.99870 * 180.02562 * 26 16 15 47 47 H 1.07999 * 120.00342 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2459 2.0253 1.2876 5 6 3.1681 3.2337 1.1212 6 6 2.6269 4.1193 -0.0014 7 6 2.7712 3.3624 -1.3241 8 1 3.8246 3.3123 -1.5995 9 7 2.0276 4.0683 -2.3704 10 6 2.3867 3.9304 -3.6621 11 8 3.3275 3.2198 -3.9590 12 7 1.7022 4.5795 -4.6249 13 6 2.1409 4.5251 -5.9535 14 6 3.5001 4.4658 -6.2344 15 6 3.9322 4.4070 -7.5438 16 6 3.0085 4.4187 -8.5811 17 8 3.4339 4.3665 -9.8695 18 6 2.4972 4.5042 -10.8294 19 1 1.4774 4.7354 -10.5595 20 6 2.8432 4.3490 -12.1628 21 7 1.9290 4.4829 -13.0995 22 14 4.6070 3.9484 -12.6296 23 1 4.7861 2.4748 -12.6689 24 1 4.9070 4.5193 -13.9672 25 1 5.5301 4.5325 -11.6237 26 6 1.6496 4.4833 -8.3004 27 6 1.2172 4.5366 -6.9910 28 6 2.2269 1.9703 -1.1780 29 8 1.9628 1.3487 -2.1854 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.2919 2.3542 1.6995 36 1 2.7066 1.3118 1.9707 37 1 3.1951 3.8038 2.0498 38 1 4.1728 2.8950 0.8681 39 1 3.1971 5.0473 -0.0457 40 1 1.5757 4.3423 0.1810 41 1 1.2767 4.6350 -2.1336 42 1 0.9058 5.0842 -4.3973 43 1 4.2185 4.4612 -5.4279 44 1 4.9886 4.3563 -7.7620 45 1 2.1712 4.3746 -14.0326 46 1 0.9314 4.4920 -9.1071 47 1 0.1607 4.5864 -6.7727 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647444409.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:43:27 Heat of formation + Delta-G solvation = -49.699082 kcal Electronic energy + Delta-G solvation = -30026.264879 eV Core-core repulsion = 25789.429890 eV Total energy + Delta-G solvation = -4236.834988 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.18479 -40.00009 -38.79837 -36.87977 -36.80884 -35.63951 -33.97822 -33.25376 -32.23633 -30.43648 -30.21360 -29.37055 -27.69912 -25.29074 -24.86411 -23.77421 -22.41093 -22.27564 -21.64797 -20.42508 -19.17480 -18.38105 -17.70485 -17.57909 -17.18817 -17.02667 -16.53703 -16.10255 -15.30522 -14.94814 -14.68807 -14.52505 -14.36491 -14.17975 -14.02881 -13.84514 -13.77069 -13.61543 -13.56293 -12.89118 -12.71015 -12.55155 -12.28605 -12.24964 -12.17193 -11.94077 -11.79587 -11.72696 -11.59779 -11.47865 -11.26665 -10.88463 -10.68806 -10.28184 -10.11419 -9.94216 -9.59780 -9.24209 -9.10057 -9.04288 -8.69387 -8.19527 -6.93407 -6.34940 -4.00168 2.14828 2.19055 2.25900 2.59863 2.88172 3.27625 3.32113 3.41945 3.47578 4.07945 4.13571 4.16581 4.19513 4.30871 4.41174 4.59262 4.72485 4.78315 4.82280 4.94975 4.99189 4.99273 5.11220 5.16164 5.22546 5.23900 5.36233 5.39843 5.56281 5.58741 5.65552 5.78904 5.85902 6.11306 6.13928 6.18131 6.21241 6.26658 6.68333 6.78238 6.86886 7.14277 7.19468 7.24183 7.32534 7.67900 7.85744 7.97864 8.05925 8.10752 8.72672 9.01017 9.64855 10.72908 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.022955 B = 0.001974 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.498242 B =14177.430683 C =14447.265331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.103 3.897 3 N -0.608 5.608 4 C 0.113 3.887 5 C -0.133 4.133 6 C -0.129 4.129 7 C 0.159 3.841 8 H 0.120 0.880 9 N -0.733 5.733 10 C 0.706 3.294 11 O -0.559 6.559 12 N -0.675 5.675 13 C 0.071 3.929 14 C -0.071 4.071 15 C -0.175 4.175 16 C 0.149 3.851 17 O -0.219 6.219 18 C -0.387 4.387 19 H 0.106 0.894 20 C 0.061 3.939 21 N -0.882 5.882 22 Si 0.905 3.095 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.259 1.259 26 C -0.204 4.204 27 C -0.096 4.096 28 C 0.495 3.505 29 O -0.516 6.516 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.053 0.947 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.091 0.909 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.076 0.924 41 H 0.397 0.603 42 H 0.398 0.602 43 H 0.126 0.874 44 H 0.120 0.880 45 H 0.278 0.722 46 H 0.137 0.863 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.918 -0.788 34.553 34.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.019 4.019 3 N -0.344 5.344 4 C -0.010 4.010 5 C -0.171 4.171 6 C -0.168 4.168 7 C 0.049 3.951 8 H 0.138 0.862 9 N -0.390 5.390 10 C 0.407 3.593 11 O -0.434 6.434 12 N -0.323 5.323 13 C -0.022 4.022 14 C -0.091 4.091 15 C -0.195 4.195 16 C 0.097 3.903 17 O -0.124 6.124 18 C -0.462 4.462 19 H 0.123 0.877 20 C -0.141 4.141 21 N -0.520 5.520 22 Si 0.731 3.269 23 H -0.199 1.199 24 H -0.209 1.209 25 H -0.183 1.183 26 C -0.223 4.223 27 C -0.116 4.116 28 C 0.280 3.720 29 O -0.389 6.389 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.104 0.896 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.110 0.890 38 H 0.097 0.903 39 H 0.105 0.895 40 H 0.095 0.905 41 H 0.231 0.769 42 H 0.231 0.769 43 H 0.144 0.856 44 H 0.138 0.862 45 H 0.088 0.912 46 H 0.155 0.845 47 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -0.974 -1.785 33.381 33.443 hybrid contribution -0.442 0.232 0.019 0.500 sum -1.416 -1.553 33.400 33.466 Atomic orbital electron populations 1.22074 0.95823 1.02254 1.02133 1.21485 0.94639 0.82568 1.03236 1.47482 1.66382 1.14758 1.05762 1.21423 0.99498 0.95144 0.84939 1.21775 0.99863 0.95906 0.99601 1.21889 1.02994 0.99422 0.92462 1.20585 0.98458 0.88325 0.87721 0.86239 1.44791 1.37255 1.52293 1.04642 1.15809 0.83149 0.80036 0.80301 1.90955 1.30459 1.41121 1.80830 1.42287 1.30558 1.53801 1.05639 1.17069 0.92930 1.11036 0.81206 1.20608 0.93865 0.98919 0.95699 1.20107 0.98726 1.10198 0.90441 1.19137 0.92111 0.94122 0.84928 1.83600 1.37100 1.80451 1.11254 1.20744 0.91825 1.48829 0.84834 0.87718 1.24460 0.99524 0.95974 0.94167 1.69662 1.33524 1.48036 1.00822 0.86177 0.83713 0.79159 0.77850 1.19938 1.20880 1.18309 1.21077 0.95911 1.09065 0.96276 1.20492 0.97634 1.01819 0.91683 1.20763 0.78719 0.89514 0.82983 1.90802 1.49297 1.63369 1.35439 0.92161 0.91633 0.92839 0.89573 0.90732 0.91718 0.90508 0.89045 0.90346 0.89491 0.90501 0.76910 0.76862 0.85592 0.86178 0.91165 0.84525 0.86966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.22 10.23 37.16 0.38 -0.84 16 2 C 0.10 0.82 5.92 -4.04 -0.02 0.80 16 3 N -0.61 -4.94 2.81 -174.96 -0.49 -5.43 16 4 C 0.11 0.45 6.40 -4.49 -0.03 0.43 16 5 C -0.13 -0.41 5.98 -26.83 -0.16 -0.57 16 6 C -0.13 -0.58 5.50 -26.75 -0.15 -0.72 16 7 C 0.16 1.49 2.69 -69.30 -0.19 1.31 16 8 H 0.12 1.32 7.57 -51.93 -0.39 0.93 16 9 N -0.73 -7.65 4.96 -60.03 -0.30 -7.94 16 10 C 0.71 10.89 7.73 -86.91 -0.67 10.21 16 11 O -0.56 -11.18 13.29 4.33 0.06 -11.12 16 12 N -0.68 -9.82 5.35 -14.18 -0.08 -9.90 16 13 C 0.07 1.30 6.27 -83.61 -0.52 0.78 16 14 C -0.07 -1.41 8.65 -39.41 -0.34 -1.75 16 15 C -0.17 -3.80 9.99 -39.42 -0.39 -4.19 16 16 C 0.15 3.61 6.65 -39.09 -0.26 3.35 16 17 O -0.22 -5.97 8.58 -0.02 0.00 -5.97 16 18 C -0.39 -11.14 9.90 30.88 0.31 -10.84 16 19 H 0.11 3.06 5.52 -52.49 -0.29 2.77 16 20 C 0.06 1.77 5.49 -17.52 -0.10 1.67 16 21 N -0.88 -25.95 13.96 55.48 0.77 -25.18 16 22 Si 0.91 22.35 28.62 -169.99 -4.86 17.48 16 23 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 25 H -0.26 -6.42 7.11 56.52 0.40 -6.01 16 26 C -0.20 -4.53 9.12 -39.42 -0.36 -4.89 16 27 C -0.10 -1.80 9.96 -39.42 -0.39 -2.20 16 28 C 0.50 5.81 7.19 -11.87 -0.09 5.72 16 29 O -0.52 -8.85 15.01 4.60 0.07 -8.78 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.09 0.92 7.20 -51.93 -0.37 0.54 16 34 H 0.07 0.39 7.86 -51.93 -0.41 -0.02 16 35 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 36 H 0.08 0.20 7.92 -51.93 -0.41 -0.21 16 37 H 0.09 0.09 8.14 -51.93 -0.42 -0.33 16 38 H 0.08 0.29 8.12 -51.93 -0.42 -0.13 16 39 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 40 H 0.08 0.27 8.10 -51.93 -0.42 -0.15 16 41 H 0.40 2.74 8.60 -40.82 -0.35 2.39 16 42 H 0.40 4.19 8.83 -40.82 -0.36 3.83 16 43 H 0.13 2.45 6.45 -52.48 -0.34 2.11 16 44 H 0.12 2.44 8.06 -52.49 -0.42 2.02 16 45 H 0.28 7.57 8.31 -40.82 -0.34 7.24 16 46 H 0.14 3.14 5.71 -52.48 -0.30 2.84 16 47 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 LS Contribution 386.73 15.07 5.83 5.83 Total: -1.00 -37.88 386.73 -8.57 -46.45 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -6.59 Total: 6.30 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: -2.99 Total: -1.74 kcal Atomic # 7 Polarization: -48.36 SS G_CDS: -0.09 Total: -48.45 kcal Atomic # 8 Polarization: -26.00 SS G_CDS: 0.13 Total: -25.87 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.86 Total: 17.48 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -37.88 -8.57 -46.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647444409.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.244 kcal (2) G-P(sol) polarization free energy of solvation -37.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds