Wall clock time and date at job start Wed Apr 1 2020 05:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 109.46943 * 2 1 4 4 C 1.45751 * 117.94519 * 89.99903 * 3 2 1 5 5 C 1.52918 * 110.32025 * 161.00781 * 4 3 2 6 6 C 1.52892 * 108.91326 * 50.80857 * 5 4 3 7 7 C 1.53075 * 108.34271 * 292.38390 * 6 5 4 8 8 H 1.08998 * 109.39980 * 288.74424 * 7 6 5 9 9 N 1.46492 * 109.33231 * 168.95317 * 7 6 5 10 10 C 1.34778 * 120.00146 * 154.61573 * 9 7 6 11 11 O 1.21586 * 119.99666 * 0.02562 * 10 9 7 12 12 N 1.34780 * 120.00133 * 179.97438 * 10 9 7 13 13 C 1.40023 * 119.99791 * 174.74099 * 12 10 9 14 14 C 1.38920 * 120.00193 * 326.16953 * 13 12 10 15 15 C 1.38010 * 119.99816 * 179.74794 * 14 13 12 16 16 C 1.38901 * 119.99798 * 0.55139 * 15 14 13 17 17 O 1.35781 * 119.99575 * 179.72327 * 16 15 14 18 18 C 1.34822 * 117.00163 * 185.89005 * 17 16 15 19 19 H 1.07995 * 119.99505 * 5.42096 * 18 17 16 20 20 C 1.38629 * 120.00068 * 185.41683 * 18 17 16 21 21 N 1.31575 * 119.99564 * 179.97438 * 20 18 17 22 22 Si 1.86793 * 120.00157 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47165 * 90.00043 * 22 20 18 24 24 H 1.48500 * 109.47454 * 209.99901 * 22 20 18 25 25 H 1.48498 * 109.47198 * 330.00241 * 22 20 18 26 26 C 1.38903 * 120.00444 * 359.70520 * 16 15 14 27 27 C 1.38004 * 120.00205 * 0.02562 * 26 16 15 28 28 C 1.33348 * 117.94306 * 269.98009 * 3 2 1 29 29 O 1.21282 * 118.24985 * 2.26541 * 28 3 2 30 30 H 1.09000 * 109.47286 * 60.00295 * 1 2 3 31 31 H 1.09002 * 109.47043 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47378 * 299.99996 * 1 2 3 33 33 H 1.09002 * 109.47378 * 240.00003 * 2 1 3 34 34 H 1.09000 * 109.47286 * 119.99705 * 2 1 3 35 35 H 1.08997 * 109.30103 * 281.21189 * 4 3 2 36 36 H 1.08993 * 109.30081 * 40.79926 * 4 3 2 37 37 H 1.08999 * 109.60982 * 170.40548 * 5 4 3 38 38 H 1.09003 * 109.60711 * 290.89423 * 5 4 3 39 39 H 1.09006 * 109.74221 * 172.66713 * 6 5 4 40 40 H 1.09000 * 109.69400 * 52.07768 * 6 5 4 41 41 H 0.97007 * 120.00367 * 334.61976 * 9 7 6 42 42 H 0.96999 * 120.00037 * 354.74479 * 12 10 9 43 43 H 1.08003 * 119.99989 * 0.02576 * 14 13 12 44 44 H 1.07992 * 119.99693 * 180.28339 * 15 14 13 45 45 H 0.97006 * 119.99488 * 179.97438 * 21 20 18 46 46 H 1.08010 * 119.99870 * 180.02562 * 26 16 15 47 47 H 1.07999 * 120.00342 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2459 2.0253 1.2876 5 6 3.1681 3.2337 1.1212 6 6 2.6269 4.1193 -0.0014 7 6 2.7712 3.3624 -1.3241 8 1 3.8246 3.3123 -1.5995 9 7 2.0276 4.0683 -2.3704 10 6 2.3867 3.9304 -3.6621 11 8 3.3275 3.2198 -3.9590 12 7 1.7022 4.5795 -4.6249 13 6 2.1409 4.5251 -5.9535 14 6 3.5001 4.4658 -6.2344 15 6 3.9322 4.4070 -7.5438 16 6 3.0085 4.4187 -8.5811 17 8 3.4339 4.3665 -9.8695 18 6 2.4972 4.5042 -10.8294 19 1 1.4774 4.7354 -10.5595 20 6 2.8432 4.3490 -12.1628 21 7 1.9290 4.4829 -13.0995 22 14 4.6070 3.9484 -12.6296 23 1 4.7861 2.4748 -12.6689 24 1 4.9070 4.5193 -13.9672 25 1 5.5301 4.5325 -11.6237 26 6 1.6496 4.4833 -8.3004 27 6 1.2172 4.5366 -6.9910 28 6 2.2269 1.9703 -1.1780 29 8 1.9628 1.3487 -2.1854 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.2919 2.3542 1.6995 36 1 2.7066 1.3118 1.9707 37 1 3.1951 3.8038 2.0498 38 1 4.1728 2.8950 0.8681 39 1 3.1971 5.0473 -0.0457 40 1 1.5757 4.3423 0.1810 41 1 1.2767 4.6350 -2.1336 42 1 0.9058 5.0842 -4.3973 43 1 4.2185 4.4612 -5.4279 44 1 4.9886 4.3563 -7.7620 45 1 2.1712 4.3746 -14.0326 46 1 0.9314 4.4920 -9.1071 47 1 0.1607 4.5864 -6.7727 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647444409.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:43:26 Heat of formation + Delta-G solvation = -77.799457 kcal Electronic energy + Delta-G solvation = -30027.483402 eV Core-core repulsion = 25789.429890 eV Total energy + Delta-G solvation = -4238.053512 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.08691 -41.28329 -40.44860 -38.43236 -37.57008 -36.59350 -35.43755 -34.40584 -34.00081 -31.91033 -31.07005 -30.29524 -29.08787 -27.14454 -25.58239 -24.54683 -23.95508 -23.07352 -22.92971 -21.83139 -20.20873 -19.67021 -19.23912 -19.11471 -18.46884 -17.79610 -17.55832 -17.05488 -16.62071 -16.27687 -15.99599 -15.73736 -15.64490 -15.42976 -15.22199 -15.06198 -14.81125 -14.64677 -14.45431 -14.31046 -14.18071 -14.04195 -13.51289 -13.43124 -13.31081 -13.07570 -12.87924 -12.77194 -12.51871 -12.40119 -12.25716 -11.99838 -11.97937 -11.76466 -11.47436 -11.37673 -11.18400 -11.02913 -10.66374 -10.04710 -9.87239 -9.71121 -8.63286 -8.48641 -6.19196 0.48629 0.53390 1.26650 1.31624 1.35807 1.52689 1.79961 1.94280 2.23433 2.29511 2.78173 3.09666 3.11343 3.18211 3.53097 3.64017 3.83309 4.00634 4.02644 4.10345 4.13724 4.24090 4.36085 4.44687 4.46692 4.54004 4.56855 4.67345 4.72163 4.80135 4.83039 4.99662 5.05910 5.06852 5.10166 5.13611 5.22132 5.24564 5.35583 5.37793 5.49768 5.54262 5.56011 5.75445 5.88714 5.96674 6.21136 6.45736 6.86086 6.98559 7.19018 7.53146 7.60933 8.62793 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.022955 B = 0.001974 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.498242 B =14177.430683 C =14447.265331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.098 3.902 3 N -0.599 5.599 4 C 0.103 3.897 5 C -0.130 4.130 6 C -0.118 4.118 7 C 0.156 3.844 8 H 0.099 0.901 9 N -0.712 5.712 10 C 0.703 3.297 11 O -0.607 6.607 12 N -0.665 5.665 13 C 0.095 3.905 14 C -0.076 4.076 15 C -0.173 4.173 16 C 0.111 3.889 17 O -0.245 6.245 18 C -0.396 4.396 19 H 0.085 0.915 20 C 0.010 3.990 21 N -0.922 5.922 22 Si 0.967 3.033 23 H -0.270 1.270 24 H -0.265 1.265 25 H -0.264 1.264 26 C -0.211 4.211 27 C -0.090 4.090 28 C 0.487 3.513 29 O -0.584 6.584 30 H 0.026 0.974 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.049 0.951 34 H 0.109 0.891 35 H 0.086 0.914 36 H 0.098 0.902 37 H 0.126 0.874 38 H 0.070 0.930 39 H 0.103 0.897 40 H 0.095 0.905 41 H 0.417 0.583 42 H 0.421 0.579 43 H 0.134 0.866 44 H 0.129 0.871 45 H 0.284 0.716 46 H 0.122 0.878 47 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.071 -0.002 39.382 39.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.024 4.024 3 N -0.332 5.332 4 C -0.018 4.018 5 C -0.168 4.168 6 C -0.156 4.156 7 C 0.046 3.954 8 H 0.117 0.883 9 N -0.369 5.369 10 C 0.403 3.597 11 O -0.485 6.485 12 N -0.314 5.314 13 C 0.000 4.000 14 C -0.096 4.096 15 C -0.193 4.193 16 C 0.062 3.938 17 O -0.153 6.153 18 C -0.473 4.473 19 H 0.103 0.897 20 C -0.188 4.188 21 N -0.563 5.563 22 Si 0.790 3.210 23 H -0.195 1.195 24 H -0.189 1.189 25 H -0.188 1.188 26 C -0.230 4.230 27 C -0.110 4.110 28 C 0.273 3.727 29 O -0.463 6.463 30 H 0.045 0.955 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.067 0.933 34 H 0.127 0.873 35 H 0.104 0.896 36 H 0.116 0.884 37 H 0.144 0.856 38 H 0.089 0.911 39 H 0.121 0.879 40 H 0.113 0.887 41 H 0.255 0.745 42 H 0.259 0.741 43 H 0.152 0.848 44 H 0.146 0.854 45 H 0.094 0.906 46 H 0.140 0.860 47 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -1.184 -0.955 38.368 38.399 hybrid contribution -0.489 -0.050 -1.026 1.137 sum -1.673 -1.005 37.343 37.394 Atomic orbital electron populations 1.22001 0.95245 1.02749 1.01475 1.21572 0.95119 0.82646 1.03087 1.47616 1.64460 1.14717 1.06413 1.21833 1.01170 0.95955 0.82886 1.21835 0.98981 0.95527 1.00416 1.21927 1.04644 0.99490 0.89542 1.20810 0.96878 0.88038 0.89648 0.88315 1.44614 1.37538 1.51693 1.03051 1.16052 0.82541 0.79428 0.81659 1.90931 1.32627 1.43129 1.81858 1.42114 1.31296 1.53988 1.04001 1.17184 0.92390 1.07351 0.83041 1.20771 0.94988 0.98816 0.95050 1.20291 0.98984 1.09456 0.90571 1.19560 0.93556 0.96297 0.84431 1.83541 1.36760 1.82865 1.12097 1.20723 0.91520 1.49199 0.85820 0.89722 1.25235 1.03505 0.96084 0.94023 1.69734 1.35332 1.49856 1.01329 0.85264 0.78751 0.79007 0.78001 1.19515 1.18935 1.18800 1.21125 0.95035 1.09332 0.97557 1.20750 0.99687 1.00468 0.90132 1.21208 0.78175 0.90138 0.83151 1.90774 1.52623 1.65056 1.37891 0.95466 0.90719 0.90567 0.93257 0.87263 0.89550 0.88380 0.85598 0.91141 0.87854 0.88674 0.74501 0.74112 0.84822 0.85354 0.90621 0.86004 0.83145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.12 10.23 71.98 0.74 -1.38 16 2 C 0.10 1.45 5.92 86.38 0.51 1.97 16 3 N -0.60 -8.61 2.81 -826.65 -2.32 -10.93 16 4 C 0.10 0.39 6.40 86.49 0.55 0.95 16 5 C -0.13 -0.24 5.98 30.53 0.18 -0.05 16 6 C -0.12 -0.58 5.50 30.58 0.17 -0.41 16 7 C 0.16 2.68 2.69 44.11 0.12 2.80 16 8 H 0.10 2.15 7.57 -2.39 -0.02 2.13 16 9 N -0.71 -13.44 4.96 -462.09 -2.29 -15.73 16 10 C 0.70 20.79 7.73 179.05 1.38 22.18 16 11 O -0.61 -24.36 13.29 -3.07 -0.04 -24.40 16 12 N -0.66 -17.87 5.35 -317.04 -1.70 -19.57 16 13 C 0.09 3.38 6.27 38.16 0.24 3.62 16 14 C -0.08 -3.00 8.65 22.38 0.19 -2.81 16 15 C -0.17 -7.63 9.99 22.37 0.22 -7.41 16 16 C 0.11 5.54 6.65 22.59 0.15 5.69 16 17 O -0.24 -13.93 8.58 -23.00 -0.20 -14.12 16 18 C -0.40 -23.94 9.90 67.91 0.67 -23.26 16 19 H 0.09 5.27 5.52 -2.91 -0.02 5.25 16 20 C 0.01 0.59 5.49 84.82 0.47 1.05 16 21 N -0.92 -56.01 13.96 21.61 0.30 -55.71 16 22 Si 0.97 47.19 28.62 68.60 1.96 49.15 16 23 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 24 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 25 H -0.26 -12.91 7.11 99.48 0.71 -12.20 16 26 C -0.21 -9.61 9.12 22.37 0.20 -9.41 16 27 C -0.09 -3.29 9.96 22.38 0.22 -3.06 16 28 C 0.49 11.17 7.19 87.72 0.63 11.80 16 29 O -0.58 -20.84 15.01 -2.12 -0.03 -20.87 16 30 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.07 0.85 8.14 -2.39 -0.02 0.84 16 32 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.05 1.11 7.20 -2.39 -0.02 1.09 16 34 H 0.11 0.83 7.86 -2.39 -0.02 0.82 16 35 H 0.09 0.06 8.14 -2.39 -0.02 0.04 16 36 H 0.10 0.04 7.92 -2.39 -0.02 0.02 16 37 H 0.13 -0.50 8.14 -2.39 -0.02 -0.52 16 38 H 0.07 0.29 8.12 -2.39 -0.02 0.27 16 39 H 0.10 0.26 8.14 -2.38 -0.02 0.24 16 40 H 0.09 0.18 8.10 -2.39 -0.02 0.17 16 41 H 0.42 4.40 8.60 -92.70 -0.80 3.60 16 42 H 0.42 7.47 8.83 -92.71 -0.82 6.65 16 43 H 0.13 5.14 6.45 -2.91 -0.02 5.12 16 44 H 0.13 5.31 8.06 -2.91 -0.02 5.29 16 45 H 0.28 15.86 8.31 -92.70 -0.77 15.09 16 46 H 0.12 5.90 5.71 -2.91 -0.02 5.89 16 47 H 0.15 4.31 8.06 -2.91 -0.02 4.29 16 Total: -1.00 -89.84 386.73 1.75 -88.09 By element: Atomic # 1 Polarization: 22.44 SS G_CDS: -0.59 Total: 21.84 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: 6.66 Total: 2.25 kcal Atomic # 7 Polarization: -95.94 SS G_CDS: -6.01 Total: -101.95 kcal Atomic # 8 Polarization: -59.12 SS G_CDS: -0.27 Total: -59.39 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 1.96 Total: 49.15 kcal Total: -89.84 1.75 -88.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647444409.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.294 kcal (2) G-P(sol) polarization free energy of solvation -89.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds