Wall clock time and date at job start Wed Apr 1 2020 04:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08997 * 109.47110 * 2 1 4 4 C 1.50700 * 109.46954 * 239.99705 * 2 1 3 5 5 H 1.08005 * 119.99861 * 239.99710 * 4 2 1 6 6 C 1.37869 * 120.00088 * 59.99963 * 4 2 1 7 7 N 1.31519 * 120.00197 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00032 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47150 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47401 * 120.00119 * 8 6 4 11 11 H 1.48504 * 109.47463 * 240.00453 * 8 6 4 12 12 N 1.46896 * 109.47099 * 119.99603 * 2 1 3 13 13 C 1.46893 * 111.00157 * 176.04502 * 12 2 1 14 14 C 1.38583 * 111.00040 * 300.00184 * 12 2 1 15 15 N 1.31215 * 126.47287 * 345.36248 * 14 12 2 16 16 N 1.28532 * 109.86267 * 179.97438 * 15 14 12 17 17 C 1.30294 * 110.05019 * 359.97438 * 16 15 14 18 18 C 1.50703 * 126.34649 * 180.02562 * 17 16 15 19 19 C 1.50701 * 109.47156 * 89.97289 * 18 17 16 20 20 C 1.33639 * 122.74407 * 124.73543 * 19 18 17 21 21 S 1.76201 * 107.92236 * 179.97438 * 20 19 18 22 22 C 1.70978 * 90.28195 * 0.27017 * 21 20 19 23 23 N 1.29026 * 110.16689 * 359.84320 * 22 21 20 24 24 N 1.36458 * 126.47247 * 165.04420 * 14 12 2 25 25 C 1.46496 * 127.13881 * 0.04193 * 24 14 12 26 26 C 1.52993 * 109.47070 * 275.29776 * 25 24 14 27 27 C 1.53005 * 117.49865 * 242.33760 * 26 25 24 28 28 C 1.53000 * 117.50012 * 173.71634 * 26 25 24 29 29 H 1.08997 * 109.47110 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47007 * 300.00124 * 1 2 3 31 31 H 1.09002 * 109.46757 * 60.00307 * 1 2 3 32 32 H 0.97002 * 119.99769 * 179.97438 * 7 6 4 33 33 H 1.08996 * 109.46970 * 56.88504 * 13 12 2 34 34 H 1.09006 * 109.47086 * 176.88241 * 13 12 2 35 35 H 1.08994 * 109.47536 * 296.88233 * 13 12 2 36 36 H 1.09003 * 109.47218 * 209.97602 * 18 17 16 37 37 H 1.09002 * 109.47209 * 329.97293 * 18 17 16 38 38 H 1.07998 * 126.04388 * 0.03529 * 20 19 18 39 39 H 1.08000 * 124.91641 * 179.83969 * 22 21 20 40 40 H 1.09003 * 109.46855 * 35.29550 * 25 24 14 41 41 H 1.08999 * 109.47443 * 155.29193 * 25 24 14 42 42 H 1.09007 * 115.55263 * 28.04571 * 26 25 24 43 43 H 1.08994 * 117.49552 * 359.97438 * 27 26 25 44 44 H 1.09004 * 117.49709 * 145.02179 * 27 26 25 45 45 H 1.09001 * 117.50127 * 214.97798 * 28 26 25 46 46 H 1.08994 * 117.49945 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6534 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3225 -1.1198 -4.0078 9 1 3.1484 -2.2859 -3.6036 10 1 1.1679 -1.5869 -4.8164 11 1 3.1474 -0.1861 -4.8160 12 7 2.0197 -0.6924 1.1994 13 6 3.4851 -0.7945 1.1871 14 6 1.5754 -0.0639 2.3519 15 7 1.0528 1.1369 2.4335 16 7 0.7522 1.4003 3.6551 17 6 1.0622 0.3912 4.4189 18 6 0.8666 0.3071 5.9108 19 6 -0.4936 -0.2699 6.2074 20 6 -0.6692 -1.3483 6.9770 21 16 -2.3979 -1.6786 7.0613 22 6 -2.7120 -0.3385 6.0469 23 7 -1.6068 0.2438 5.7242 24 7 1.5931 -0.5794 3.6152 25 6 2.0822 -1.8979 4.0258 26 6 0.9735 -2.9349 3.8361 27 6 0.4616 -3.6581 5.0835 28 6 1.3323 -4.4037 4.0702 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 0.7096 1.1616 -3.4845 33 1 3.9180 0.2023 1.1033 34 1 3.8246 -1.2615 2.1116 35 1 3.8000 -1.4000 0.3373 36 1 1.6352 -0.3339 6.3425 37 1 0.9403 1.3048 6.3437 38 1 0.1106 -1.9164 7.4624 39 1 -3.6935 -0.0249 5.7231 40 1 2.9438 -2.1715 3.4167 41 1 2.3746 -1.8663 5.0753 42 1 0.2508 -2.7123 3.0509 43 1 0.9151 -3.3953 6.0391 44 1 -0.5980 -3.9113 5.1192 45 1 0.8456 -5.1474 3.4393 46 1 2.3584 -4.6312 4.3589 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650541381.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:52 Heat of formation + Delta-G solvation = 176.874198 kcal Electronic energy + Delta-G solvation = -29274.022570 eV Core-core repulsion = 25522.058158 eV Total energy + Delta-G solvation = -3751.964412 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.44901 -39.90626 -37.77859 -37.04840 -34.15530 -33.17021 -32.41388 -29.76689 -29.20887 -27.72862 -27.06813 -25.31839 -24.89416 -24.26581 -22.60764 -21.85651 -21.30047 -20.58119 -19.57312 -19.34756 -18.22109 -16.94187 -16.31909 -16.09746 -15.65344 -15.49487 -15.08478 -14.71967 -14.65381 -14.25271 -14.15886 -13.81654 -13.50903 -13.37847 -13.06176 -12.98963 -12.62267 -12.30842 -11.94003 -11.88865 -11.70995 -11.60667 -11.11018 -11.01070 -10.88745 -10.67404 -10.56146 -10.30534 -10.17229 -10.12892 -10.03880 -9.81312 -9.70003 -9.59960 -9.52877 -9.20353 -9.00982 -8.57140 -8.41492 -7.35147 -6.01520 -4.09015 0.56254 1.23158 1.54450 2.27305 2.64643 2.75814 3.28844 3.36506 3.39265 3.50789 3.62587 4.06284 4.33586 4.44927 4.60171 4.61707 4.64169 4.83739 4.85171 4.86076 4.93515 5.06153 5.21684 5.29953 5.33564 5.37276 5.43688 5.51123 5.66888 5.71193 5.89925 5.93090 5.98733 6.12230 6.12720 6.28085 6.42327 6.53810 6.97329 7.02945 7.22196 7.31697 7.49983 7.65008 7.75656 7.78460 8.01482 8.29552 8.50325 8.93440 9.46127 9.55773 11.04823 Molecular weight = 347.15amu Principal moments of inertia in cm(-1) A = 0.015078 B = 0.003249 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.622743 B = 8616.595126 C = 9069.188919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.230 3.770 3 H 0.024 0.976 4 C -0.515 4.515 5 H 0.064 0.936 6 C 0.064 3.936 7 N -0.883 5.883 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 N -0.458 5.458 13 C 0.043 3.957 14 C 0.387 3.613 15 N -0.316 5.316 16 N -0.266 5.266 17 C 0.154 3.846 18 C 0.053 3.947 19 C 0.078 3.922 20 C -0.249 4.249 21 S 0.102 5.898 22 C 0.029 3.971 23 N -0.444 5.444 24 N -0.480 5.480 25 C 0.147 3.853 26 C -0.161 4.161 27 C -0.175 4.175 28 C -0.167 4.167 29 H 0.022 0.978 30 H 0.027 0.973 31 H 0.088 0.912 32 H 0.262 0.738 33 H 0.032 0.968 34 H 0.043 0.957 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.112 0.888 38 H 0.175 0.825 39 H 0.198 0.802 40 H 0.098 0.902 41 H 0.086 0.914 42 H 0.113 0.887 43 H 0.092 0.908 44 H 0.092 0.908 45 H 0.097 0.903 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.001 -9.649 22.503 24.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.126 3.874 3 H 0.042 0.958 4 C -0.554 4.554 5 H 0.082 0.918 6 C -0.139 4.139 7 N -0.521 5.521 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.210 1.210 12 N -0.183 5.183 13 C -0.105 4.105 14 C 0.031 3.969 15 N -0.160 5.160 16 N -0.105 5.105 17 C -0.113 4.113 18 C 0.010 3.990 19 C -0.055 4.055 20 C -0.388 4.388 21 S 0.354 5.646 22 C -0.270 4.270 23 N -0.156 5.156 24 N -0.177 5.177 25 C 0.024 3.976 26 C -0.180 4.180 27 C -0.212 4.212 28 C -0.205 4.205 29 H 0.041 0.959 30 H 0.046 0.954 31 H 0.106 0.894 32 H 0.072 0.928 33 H 0.051 0.949 34 H 0.062 0.938 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.130 0.870 38 H 0.193 0.807 39 H 0.215 0.785 40 H 0.116 0.884 41 H 0.104 0.896 42 H 0.131 0.869 43 H 0.110 0.890 44 H 0.111 0.889 45 H 0.116 0.884 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.440 -8.899 22.012 23.867 hybrid contribution 1.592 -0.870 -0.826 1.994 sum -0.848 -9.769 21.185 23.344 Atomic orbital electron populations 1.21826 0.96960 0.98899 1.01525 1.19336 0.93085 0.92715 0.82242 0.95846 1.21099 1.32026 1.12675 0.89558 0.91755 1.24901 0.95052 0.95016 0.98936 1.69942 1.36110 1.22563 1.23476 0.86441 0.78577 0.79503 0.82847 1.19771 1.20990 1.21028 1.59158 1.10333 1.49403 0.99421 1.22294 0.85531 1.01138 1.01499 1.23108 1.00115 0.89038 0.84605 1.74855 1.20038 1.10339 1.10773 1.73984 1.17068 1.22422 0.97043 1.23870 1.04461 0.87947 0.95057 1.18325 0.90634 1.03263 0.86747 1.20026 0.94631 0.94069 0.96811 1.26755 0.99176 1.03517 1.09339 1.83984 1.01434 1.31816 1.47368 1.28482 1.01546 0.96501 1.00497 1.66111 0.97393 1.30500 1.21626 1.46130 1.49580 1.14490 1.07474 1.21308 0.96345 0.79143 1.00838 1.22548 1.01419 0.92978 1.01086 1.23069 1.00044 1.04503 0.93600 1.22928 1.00740 0.94056 1.02754 0.95861 0.95383 0.89393 0.92831 0.94931 0.93837 0.88882 0.88987 0.86988 0.80740 0.78539 0.88379 0.89598 0.86905 0.89002 0.88936 0.88415 0.88610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.60 8.79 37.16 0.33 -3.28 16 2 C 0.23 6.05 1.72 -68.86 -0.12 5.93 16 3 H 0.02 0.70 7.96 -51.93 -0.41 0.29 16 4 C -0.51 -13.94 7.96 -34.44 -0.27 -14.22 16 5 H 0.06 1.68 6.40 -52.48 -0.34 1.35 16 6 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.88 -25.60 11.32 55.43 0.63 -24.98 16 8 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 9 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 N -0.46 -10.10 4.66 -176.09 -0.82 -10.92 16 13 C 0.04 0.81 9.04 60.06 0.54 1.35 16 14 C 0.39 8.21 6.22 -318.87 -1.98 6.23 16 15 N -0.32 -7.54 9.67 30.32 0.29 -7.25 16 16 N -0.27 -5.69 12.18 32.99 0.40 -5.29 16 17 C 0.15 2.59 7.20 -154.01 -1.11 1.48 16 18 C 0.05 0.61 6.07 -29.03 -0.18 0.44 16 19 C 0.08 0.92 6.07 -84.23 -0.51 0.41 16 20 C -0.25 -2.15 9.80 29.12 0.29 -1.87 16 21 S 0.10 0.83 23.22 -107.50 -2.50 -1.67 16 22 C 0.03 0.31 12.23 51.58 0.63 0.94 16 23 N -0.44 -6.24 10.39 -11.90 -0.12 -6.36 16 24 N -0.48 -8.00 2.81 -114.09 -0.32 -8.32 16 25 C 0.15 1.78 6.25 -4.05 -0.03 1.76 16 26 C -0.16 -1.95 6.01 -90.62 -0.54 -2.49 16 27 C -0.18 -1.56 9.21 -26.73 -0.25 -1.81 16 28 C -0.17 -1.56 10.25 -26.73 -0.27 -1.83 16 29 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.03 0.75 5.99 -51.93 -0.31 0.43 16 31 H 0.09 2.55 6.07 -51.93 -0.32 2.24 16 32 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 33 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.04 0.66 5.91 -51.93 -0.31 0.36 16 35 H 0.09 1.77 6.35 -51.93 -0.33 1.44 16 36 H 0.09 0.73 7.07 -51.93 -0.37 0.36 16 37 H 0.11 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.18 1.01 7.45 -52.49 -0.39 0.62 16 39 H 0.20 1.60 8.06 -52.49 -0.42 1.18 16 40 H 0.10 1.18 5.98 -51.93 -0.31 0.87 16 41 H 0.09 0.76 6.84 -51.93 -0.36 0.40 16 42 H 0.11 1.82 8.14 -51.93 -0.42 1.40 16 43 H 0.09 0.64 7.11 -51.93 -0.37 0.27 16 44 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 46 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 383.70 15.07 5.78 5.78 Total: -1.00 -34.49 383.70 -11.57 -46.06 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -6.32 Total: 2.17 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: -3.57 Total: -5.31 kcal Atomic # 7 Polarization: -63.17 SS G_CDS: 0.06 Total: -63.11 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 0.83 SS G_CDS: -2.50 Total: -1.67 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.49 -11.57 -46.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650541381.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 222.933 kcal (2) G-P(sol) polarization free energy of solvation -34.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 188.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 176.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds