Wall clock time and date at job start Wed Apr 1 2020 04:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08997 * 109.47110 * 2 1 4 4 C 1.50700 * 109.46954 * 239.99705 * 2 1 3 5 5 H 1.08005 * 119.99861 * 239.99710 * 4 2 1 6 6 C 1.37869 * 120.00088 * 59.99963 * 4 2 1 7 7 N 1.31519 * 120.00197 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00032 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47150 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47401 * 120.00119 * 8 6 4 11 11 H 1.48504 * 109.47463 * 240.00453 * 8 6 4 12 12 N 1.46896 * 109.47099 * 119.99603 * 2 1 3 13 13 C 1.46893 * 111.00157 * 176.04502 * 12 2 1 14 14 C 1.38583 * 111.00040 * 300.00184 * 12 2 1 15 15 N 1.31215 * 126.47287 * 345.36248 * 14 12 2 16 16 N 1.28532 * 109.86267 * 179.97438 * 15 14 12 17 17 C 1.30294 * 110.05019 * 359.97438 * 16 15 14 18 18 C 1.50703 * 126.34649 * 180.02562 * 17 16 15 19 19 C 1.50701 * 109.47156 * 89.97289 * 18 17 16 20 20 C 1.33639 * 122.74407 * 124.73543 * 19 18 17 21 21 S 1.76201 * 107.92236 * 179.97438 * 20 19 18 22 22 C 1.70978 * 90.28195 * 0.27017 * 21 20 19 23 23 N 1.29026 * 110.16689 * 359.84320 * 22 21 20 24 24 N 1.36458 * 126.47247 * 165.04420 * 14 12 2 25 25 C 1.46496 * 127.13881 * 0.04193 * 24 14 12 26 26 C 1.52993 * 109.47070 * 275.29776 * 25 24 14 27 27 C 1.53005 * 117.49865 * 242.33760 * 26 25 24 28 28 C 1.53000 * 117.50012 * 173.71634 * 26 25 24 29 29 H 1.08997 * 109.47110 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47007 * 300.00124 * 1 2 3 31 31 H 1.09002 * 109.46757 * 60.00307 * 1 2 3 32 32 H 0.97002 * 119.99769 * 179.97438 * 7 6 4 33 33 H 1.08996 * 109.46970 * 56.88504 * 13 12 2 34 34 H 1.09006 * 109.47086 * 176.88241 * 13 12 2 35 35 H 1.08994 * 109.47536 * 296.88233 * 13 12 2 36 36 H 1.09003 * 109.47218 * 209.97602 * 18 17 16 37 37 H 1.09002 * 109.47209 * 329.97293 * 18 17 16 38 38 H 1.07998 * 126.04388 * 0.03529 * 20 19 18 39 39 H 1.08000 * 124.91641 * 179.83969 * 22 21 20 40 40 H 1.09003 * 109.46855 * 35.29550 * 25 24 14 41 41 H 1.08999 * 109.47443 * 155.29193 * 25 24 14 42 42 H 1.09007 * 115.55263 * 28.04571 * 26 25 24 43 43 H 1.08994 * 117.49552 * 359.97438 * 27 26 25 44 44 H 1.09004 * 117.49709 * 145.02179 * 27 26 25 45 45 H 1.09001 * 117.50127 * 214.97798 * 28 26 25 46 46 H 1.08994 * 117.49945 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6534 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3225 -1.1198 -4.0078 9 1 3.1484 -2.2859 -3.6036 10 1 1.1679 -1.5869 -4.8164 11 1 3.1474 -0.1861 -4.8160 12 7 2.0197 -0.6924 1.1994 13 6 3.4851 -0.7945 1.1871 14 6 1.5754 -0.0639 2.3519 15 7 1.0528 1.1369 2.4335 16 7 0.7522 1.4003 3.6551 17 6 1.0622 0.3912 4.4189 18 6 0.8666 0.3071 5.9108 19 6 -0.4936 -0.2699 6.2074 20 6 -0.6692 -1.3483 6.9770 21 16 -2.3979 -1.6786 7.0613 22 6 -2.7120 -0.3385 6.0469 23 7 -1.6068 0.2438 5.7242 24 7 1.5931 -0.5794 3.6152 25 6 2.0822 -1.8979 4.0258 26 6 0.9735 -2.9349 3.8361 27 6 0.4616 -3.6581 5.0835 28 6 1.3323 -4.4037 4.0702 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 0.7096 1.1616 -3.4845 33 1 3.9180 0.2023 1.1033 34 1 3.8246 -1.2615 2.1116 35 1 3.8000 -1.4000 0.3373 36 1 1.6352 -0.3339 6.3425 37 1 0.9403 1.3048 6.3437 38 1 0.1106 -1.9164 7.4624 39 1 -3.6935 -0.0249 5.7231 40 1 2.9438 -2.1715 3.4167 41 1 2.3746 -1.8663 5.0753 42 1 0.2508 -2.7123 3.0509 43 1 0.9151 -3.3953 6.0391 44 1 -0.5980 -3.9113 5.1192 45 1 0.8456 -5.1474 3.4393 46 1 2.3584 -4.6312 4.3589 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650541381.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:51 Heat of formation + Delta-G solvation = 155.901108 kcal Electronic energy + Delta-G solvation = -29274.932031 eV Core-core repulsion = 25522.058158 eV Total energy + Delta-G solvation = -3752.873873 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.148 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.90124 -40.71700 -38.84878 -38.63052 -35.44211 -34.93194 -33.67087 -31.27456 -30.87981 -28.92599 -28.18531 -27.17019 -26.05316 -25.74847 -23.70077 -23.20562 -22.44203 -21.75404 -20.99695 -20.38007 -19.04157 -18.53161 -17.89468 -17.46115 -17.04003 -16.66689 -16.38562 -16.06306 -15.88308 -15.51497 -15.22560 -15.10386 -14.77687 -14.45227 -14.28347 -14.10980 -13.88398 -13.71764 -13.42626 -13.06190 -12.89839 -12.74285 -12.72582 -12.43834 -12.38402 -12.31039 -12.21385 -12.14171 -12.04172 -11.53370 -11.40916 -11.09737 -10.94642 -10.79961 -10.59247 -10.47214 -10.33325 -10.30458 -9.72819 -9.06970 -8.13865 -6.29691 -0.15665 0.56336 0.76031 0.97298 1.36886 1.43619 1.44647 1.56847 1.85000 2.03344 2.40574 2.84739 3.02801 3.17575 3.31359 3.51166 3.67326 3.77251 3.94276 3.98625 4.07546 4.13313 4.17281 4.27408 4.43207 4.45007 4.51944 4.55165 4.64734 4.75339 4.78954 4.79216 4.80487 4.95113 5.02239 5.06731 5.08815 5.13416 5.20178 5.23124 5.28311 5.40701 5.58380 5.64495 5.93507 6.03505 6.15218 6.62858 6.81072 6.92361 7.39398 7.95830 8.93511 Molecular weight = 347.15amu Principal moments of inertia in cm(-1) A = 0.015078 B = 0.003249 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.622743 B = 8616.595126 C = 9069.188919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.244 3.756 3 H -0.025 1.025 4 C -0.525 4.525 5 H 0.075 0.925 6 C 0.010 3.990 7 N -0.921 5.921 8 Si 0.972 3.028 9 H -0.257 1.257 10 H -0.283 1.283 11 H -0.281 1.281 12 N -0.456 5.456 13 C 0.044 3.956 14 C 0.366 3.634 15 N -0.371 5.371 16 N -0.322 5.322 17 C 0.187 3.813 18 C 0.052 3.948 19 C 0.046 3.954 20 C -0.229 4.229 21 S 0.166 5.834 22 C -0.001 4.001 23 N -0.501 5.501 24 N -0.469 5.469 25 C 0.140 3.860 26 C -0.190 4.190 27 C -0.153 4.153 28 C -0.154 4.154 29 H 0.019 0.981 30 H 0.018 0.982 31 H 0.062 0.938 32 H 0.263 0.737 33 H 0.014 0.986 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.142 0.858 37 H 0.113 0.887 38 H 0.216 0.784 39 H 0.205 0.795 40 H 0.100 0.900 41 H 0.134 0.866 42 H 0.059 0.941 43 H 0.127 0.873 44 H 0.087 0.913 45 H 0.090 0.910 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.651 -13.495 25.797 29.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.138 3.862 3 H -0.007 1.007 4 C -0.563 4.563 5 H 0.093 0.907 6 C -0.189 4.189 7 N -0.560 5.560 8 Si 0.796 3.204 9 H -0.180 1.180 10 H -0.209 1.209 11 H -0.207 1.207 12 N -0.181 5.181 13 C -0.102 4.102 14 C 0.009 3.991 15 N -0.215 5.215 16 N -0.160 5.160 17 C -0.083 4.083 18 C 0.010 3.990 19 C -0.086 4.086 20 C -0.368 4.368 21 S 0.418 5.582 22 C -0.299 4.299 23 N -0.215 5.215 24 N -0.164 5.164 25 C 0.019 3.981 26 C -0.209 4.209 27 C -0.190 4.190 28 C -0.191 4.191 29 H 0.039 0.961 30 H 0.037 0.963 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.033 0.967 34 H 0.104 0.896 35 H 0.110 0.890 36 H 0.160 0.840 37 H 0.131 0.869 38 H 0.233 0.767 39 H 0.222 0.778 40 H 0.118 0.882 41 H 0.152 0.848 42 H 0.078 0.922 43 H 0.145 0.855 44 H 0.105 0.895 45 H 0.108 0.892 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.788 -12.773 25.345 28.393 hybrid contribution 0.975 0.272 -1.654 1.939 sum 0.187 -12.501 23.691 26.787 Atomic orbital electron populations 1.21580 0.98050 0.97883 0.99718 1.18892 0.92117 0.90643 0.84512 1.00696 1.21391 1.32052 1.12865 0.89985 0.90687 1.25848 0.95075 0.95633 1.02354 1.70109 1.37398 1.24239 1.24230 0.85301 0.78033 0.78629 0.78410 1.18050 1.20864 1.20711 1.59065 1.12005 1.48493 0.98496 1.22370 0.83702 1.00476 1.03697 1.22943 1.01048 0.89204 0.85918 1.74687 1.21512 1.12555 1.12751 1.73870 1.20074 1.25184 0.96847 1.24894 1.00283 0.86178 0.96924 1.18701 0.92570 1.04953 0.82786 1.19985 0.93834 0.95774 0.99043 1.27210 1.00645 1.01848 1.07122 1.83762 1.00560 1.29039 1.44811 1.28685 1.01427 0.98098 1.01653 1.66087 0.98957 1.32849 1.23648 1.46304 1.48706 1.15900 1.05476 1.21769 0.96191 0.76583 1.03540 1.22282 1.01473 0.94952 1.02187 1.23210 1.00103 1.01917 0.93767 1.23037 1.02242 0.91599 1.02257 0.96150 0.96325 0.91937 0.92828 0.96704 0.89613 0.88977 0.83987 0.86873 0.76746 0.77830 0.88180 0.84773 0.92221 0.85517 0.89457 0.89179 0.86029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -6.58 8.79 71.99 0.63 -5.95 16 2 C 0.24 13.61 1.72 44.17 0.08 13.69 16 3 H -0.02 -1.59 7.96 -2.39 -0.02 -1.61 16 4 C -0.52 -29.24 7.96 25.60 0.20 -29.04 16 5 H 0.08 3.94 6.40 -2.91 -0.02 3.92 16 6 C 0.01 0.57 5.30 84.65 0.45 1.02 16 7 N -0.92 -55.83 11.32 21.45 0.24 -55.59 16 8 Si 0.97 43.81 29.54 68.60 2.03 45.84 16 9 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 10 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 11 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 12 N -0.46 -20.85 4.66 -711.01 -3.31 -24.16 16 13 C 0.04 1.68 9.04 127.69 1.15 2.84 16 14 C 0.37 16.18 6.22 260.11 1.62 17.79 16 15 N -0.37 -18.96 9.67 -58.00 -0.56 -19.52 16 16 N -0.32 -14.48 12.18 -49.53 -0.60 -15.08 16 17 C 0.19 6.19 7.20 137.64 0.99 7.18 16 18 C 0.05 1.06 6.07 29.10 0.18 1.24 16 19 C 0.05 0.98 6.07 41.52 0.25 1.23 16 20 C -0.23 -2.90 9.80 66.78 0.65 -2.24 16 21 S 0.17 2.15 23.22 -56.49 -1.31 0.84 16 22 C 0.00 -0.02 12.23 130.65 1.60 1.58 16 23 N -0.50 -14.02 10.39 -191.55 -1.99 -16.01 16 24 N -0.47 -15.27 2.81 -514.86 -1.45 -16.72 16 25 C 0.14 2.94 6.25 86.38 0.54 3.47 16 26 C -0.19 -4.14 6.01 -10.79 -0.06 -4.20 16 27 C -0.15 -2.02 9.21 30.60 0.28 -1.74 16 28 C -0.15 -2.28 10.25 30.59 0.31 -1.96 16 29 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.02 1.06 5.99 -2.39 -0.01 1.05 16 31 H 0.06 3.89 6.07 -2.39 -0.01 3.88 16 32 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 33 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.09 2.47 5.91 -2.38 -0.01 2.46 16 35 H 0.09 3.47 6.35 -2.39 -0.02 3.45 16 36 H 0.14 1.41 7.07 -2.39 -0.02 1.39 16 37 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 38 H 0.22 0.83 7.45 -2.91 -0.02 0.81 16 39 H 0.21 3.46 8.06 -2.91 -0.02 3.43 16 40 H 0.10 2.05 5.98 -2.39 -0.01 2.03 16 41 H 0.13 1.50 6.84 -2.39 -0.02 1.48 16 42 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 43 H 0.13 0.80 7.11 -2.39 -0.02 0.78 16 44 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 46 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -85.09 383.70 2.93 -82.16 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: 1.01 Total: 13.35 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: 8.87 Total: 4.89 kcal Atomic # 7 Polarization: -139.41 SS G_CDS: -7.67 Total: -147.08 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Atomic # 16 Polarization: 2.15 SS G_CDS: -1.31 Total: 0.84 kcal Total: -85.09 2.93 -82.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650541381.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 238.057 kcal (2) G-P(sol) polarization free energy of solvation -85.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 152.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 155.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds