Wall clock time and date at job start Wed Apr 1 2020 04:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.47043 * 2 1 4 4 C 1.50696 * 109.47246 * 119.99648 * 2 1 3 5 5 H 1.08001 * 119.99507 * 119.99745 * 4 2 1 6 6 C 1.37882 * 120.00369 * 300.00448 * 4 2 1 7 7 N 1.31509 * 119.99383 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 119.99904 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47393 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47152 * 119.99947 * 8 6 4 11 11 H 1.48502 * 109.46750 * 239.99863 * 8 6 4 12 12 N 1.46893 * 109.47036 * 240.00058 * 2 1 3 13 13 C 1.46899 * 111.00372 * 306.04511 * 12 2 1 14 14 C 1.38580 * 111.00005 * 69.99952 * 12 2 1 15 15 N 1.31222 * 126.47525 * 293.13675 * 14 12 2 16 16 N 1.28531 * 109.85893 * 179.97438 * 15 14 12 17 17 C 1.30286 * 110.05550 * 0.02562 * 16 15 14 18 18 C 1.50704 * 126.34644 * 179.97438 * 17 16 15 19 19 C 1.50701 * 109.47011 * 270.03624 * 18 17 16 20 20 C 1.33638 * 122.74977 * 124.72775 * 19 18 17 21 21 S 1.76204 * 107.92404 * 179.97438 * 20 19 18 22 22 C 1.70978 * 90.28091 * 0.27768 * 21 20 19 23 23 N 1.29024 * 110.16863 * 359.83818 * 22 21 20 24 24 N 1.36453 * 126.47437 * 113.11505 * 14 12 2 25 25 C 1.46508 * 127.13710 * 0.28321 * 24 14 12 26 26 C 1.53003 * 109.46933 * 267.34445 * 25 24 14 27 27 C 1.52995 * 117.49468 * 243.62036 * 26 25 24 28 28 C 1.52996 * 117.49654 * 174.99898 * 26 25 24 29 29 H 1.08994 * 109.47411 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47235 * 300.00176 * 1 2 3 31 31 H 1.09001 * 109.47124 * 59.99791 * 1 2 3 32 32 H 0.97007 * 119.99214 * 180.02562 * 7 6 4 33 33 H 1.08992 * 109.47408 * 191.69427 * 13 12 2 34 34 H 1.09001 * 109.46777 * 311.69640 * 13 12 2 35 35 H 1.09004 * 109.46837 * 71.68815 * 13 12 2 36 36 H 1.08994 * 109.47170 * 30.03371 * 18 17 16 37 37 H 1.08994 * 109.47455 * 150.03871 * 18 17 16 38 38 H 1.07994 * 126.03678 * 0.04571 * 20 19 18 39 39 H 1.08004 * 124.91859 * 179.84031 * 22 21 20 40 40 H 1.09003 * 109.46603 * 27.33737 * 25 24 14 41 41 H 1.08994 * 109.47370 * 147.34248 * 25 24 14 42 42 H 1.08997 * 115.55056 * 29.32844 * 26 25 24 43 43 H 1.09000 * 117.50163 * 359.97438 * 27 26 25 44 44 H 1.09007 * 117.49633 * 145.02456 * 27 26 25 45 45 H 1.08997 * 117.49960 * 214.97646 * 28 26 25 46 46 H 1.09002 * 117.50035 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1313 6 6 1.6992 -0.2393 2.4828 7 7 0.9435 0.8302 2.6033 8 14 2.3214 -1.1203 4.0079 9 1 3.1456 -2.2876 3.6037 10 1 3.1466 -0.1873 4.8165 11 1 1.1661 -1.5866 4.8160 12 7 2.0196 -0.6925 -1.1994 13 6 1.4343 -2.0354 -1.3078 14 6 1.7679 0.0526 -2.3405 15 7 0.5897 0.3275 -2.8485 16 7 0.7271 1.0404 -3.9091 17 6 1.9905 1.2603 -4.1391 18 6 2.5650 2.0525 -5.2852 19 6 2.8185 1.1346 -6.4532 20 6 2.3079 1.3533 -7.6686 21 16 2.8485 0.0518 -8.7262 22 6 3.7006 -0.6615 -7.4268 23 7 3.5565 0.0469 -6.3581 24 7 2.6985 0.6392 -3.1478 25 6 4.1546 0.6050 -2.9892 26 6 4.6091 1.8267 -2.1881 27 6 5.5184 2.8352 -2.8929 28 6 6.0897 1.9144 -1.8128 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 0.7094 1.1618 3.4844 33 1 1.9615 -2.6006 -2.0763 34 1 1.5259 -2.5499 -0.3513 35 1 0.3811 -1.9521 -1.5762 36 1 1.8593 2.8291 -5.5799 37 1 3.5030 2.5127 -4.9747 38 1 1.6764 2.1821 -7.9528 39 1 4.2763 -1.5730 -7.4912 40 1 4.4411 -0.3037 -2.4599 41 1 4.6274 0.6180 -3.9712 42 1 3.8847 2.2158 -1.4726 43 1 5.7932 2.6282 -3.9271 44 1 5.3923 3.8883 -2.6412 45 1 6.3394 2.3616 -0.8507 46 1 6.7400 1.1016 -2.1363 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650541394.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:56 Heat of formation + Delta-G solvation = 170.332769 kcal Electronic energy + Delta-G solvation = -29020.885398 eV Core-core repulsion = 25268.637329 eV Total energy + Delta-G solvation = -3752.248069 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.148 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.44086 -39.99980 -37.60337 -37.15025 -33.98095 -33.17639 -32.49262 -29.82745 -28.67425 -27.40267 -26.98215 -25.30958 -25.19236 -24.83112 -22.41953 -21.55291 -21.20929 -20.54458 -19.72941 -19.25017 -18.19081 -16.83148 -16.36240 -16.15290 -15.62481 -15.42399 -15.13592 -14.69768 -14.58977 -14.14614 -14.00285 -13.65925 -13.55616 -13.41828 -12.85641 -12.77924 -12.59095 -12.25496 -11.83626 -11.65418 -11.53392 -11.46251 -11.24088 -11.14842 -10.91745 -10.72387 -10.51726 -10.43580 -10.20811 -10.09282 -9.99401 -9.91686 -9.78841 -9.70108 -9.52992 -9.09439 -8.85773 -8.42811 -8.35589 -7.64818 -6.04246 -4.09788 0.48509 1.14852 1.46478 2.25841 2.52757 2.85832 3.28034 3.35931 3.39023 3.41995 3.79312 3.96047 4.35748 4.52213 4.61849 4.78604 4.82462 4.83297 4.95279 5.04425 5.09558 5.19649 5.27847 5.34258 5.43179 5.56306 5.60063 5.66600 5.83099 5.87847 5.89595 6.03927 6.10077 6.26063 6.32101 6.42320 6.60151 6.66317 6.87849 7.12108 7.13215 7.23417 7.48001 7.57881 7.69755 7.80978 8.00275 8.30093 8.52968 8.94075 9.34066 9.54699 11.02507 Molecular weight = 347.15amu Principal moments of inertia in cm(-1) A = 0.015397 B = 0.003142 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.123957 B = 8908.188241 C = 9695.102394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.228 3.772 3 H 0.034 0.966 4 C -0.504 4.504 5 H 0.065 0.935 6 C 0.061 3.939 7 N -0.889 5.889 8 Si 0.899 3.101 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.284 1.284 12 N -0.469 5.469 13 C 0.046 3.954 14 C 0.379 3.621 15 N -0.316 5.316 16 N -0.292 5.292 17 C 0.168 3.832 18 C 0.049 3.951 19 C 0.072 3.928 20 C -0.242 4.242 21 S 0.113 5.887 22 C 0.025 3.975 23 N -0.462 5.462 24 N -0.452 5.452 25 C 0.150 3.850 26 C -0.166 4.166 27 C -0.183 4.183 28 C -0.163 4.163 29 H 0.030 0.970 30 H 0.085 0.915 31 H 0.036 0.964 32 H 0.261 0.739 33 H 0.043 0.957 34 H 0.089 0.911 35 H 0.038 0.962 36 H 0.112 0.888 37 H 0.098 0.902 38 H 0.181 0.819 39 H 0.199 0.801 40 H 0.103 0.897 41 H 0.095 0.905 42 H 0.113 0.887 43 H 0.093 0.907 44 H 0.094 0.906 45 H 0.098 0.902 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.473 1.670 -20.904 23.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.124 3.876 3 H 0.052 0.948 4 C -0.542 4.542 5 H 0.083 0.917 6 C -0.140 4.140 7 N -0.528 5.528 8 Si 0.727 3.273 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.211 1.211 12 N -0.195 5.195 13 C -0.102 4.102 14 C 0.023 3.977 15 N -0.160 5.160 16 N -0.133 5.133 17 C -0.100 4.100 18 C 0.007 3.993 19 C -0.060 4.060 20 C -0.381 4.381 21 S 0.365 5.635 22 C -0.274 4.274 23 N -0.175 5.175 24 N -0.144 5.144 25 C 0.026 3.974 26 C -0.185 4.185 27 C -0.220 4.220 28 C -0.201 4.201 29 H 0.049 0.951 30 H 0.104 0.896 31 H 0.054 0.946 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.107 0.893 35 H 0.057 0.943 36 H 0.131 0.869 37 H 0.117 0.883 38 H 0.198 0.802 39 H 0.215 0.785 40 H 0.121 0.879 41 H 0.113 0.887 42 H 0.131 0.869 43 H 0.111 0.889 44 H 0.112 0.888 45 H 0.117 0.883 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 8.554 1.286 -21.425 23.105 hybrid contribution 0.755 0.095 1.805 1.959 sum 9.309 1.381 -19.620 21.760 Atomic orbital electron populations 1.22450 0.98980 1.00020 1.01902 1.19352 0.91228 0.93707 0.83347 0.94805 1.21043 1.31179 1.12790 0.89219 0.91655 1.24904 0.95076 0.95101 0.98962 1.69928 1.36543 1.22851 1.23438 0.86430 0.78548 0.79607 0.82754 1.19665 1.21086 1.21056 1.59370 1.59248 1.02442 0.98452 1.22230 0.97400 0.88163 1.02385 1.22877 0.83878 0.97234 0.93748 1.74716 1.20136 1.15311 1.05802 1.73916 1.13983 1.14182 1.11229 1.23893 0.89361 1.02726 0.94051 1.18401 1.01896 0.93260 0.85742 1.20068 0.96966 0.94412 0.94568 1.26846 1.09429 1.05536 0.96292 1.84019 1.44832 1.18045 1.16570 1.28371 1.03789 1.04308 0.90922 1.66060 1.17347 1.05342 1.28792 1.46167 1.08146 1.39663 1.20468 1.21321 0.76165 0.98941 1.00942 1.22617 0.94706 0.98241 1.02939 1.23090 1.04503 0.96800 0.97568 1.22889 0.95068 1.02228 0.99896 0.95084 0.89610 0.94551 0.92930 0.93819 0.89268 0.94319 0.86926 0.88333 0.80173 0.78480 0.87873 0.88660 0.86914 0.88874 0.88758 0.88316 0.88587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.52 8.18 37.16 0.30 -4.22 16 2 C 0.23 5.86 2.28 -68.87 -0.16 5.70 16 3 H 0.03 0.97 8.05 -51.93 -0.42 0.56 16 4 C -0.50 -13.51 7.80 -34.44 -0.27 -13.78 16 5 H 0.07 1.73 7.20 -52.49 -0.38 1.35 16 6 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 7 N -0.89 -25.31 11.32 55.43 0.63 -24.68 16 8 Si 0.90 21.02 29.54 -169.99 -5.02 15.99 16 9 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 N -0.47 -10.49 4.73 -176.09 -0.83 -11.33 16 13 C 0.05 0.95 8.49 60.06 0.51 1.46 16 14 C 0.38 8.15 6.26 -318.87 -2.00 6.15 16 15 N -0.32 -7.24 9.81 30.32 0.30 -6.94 16 16 N -0.29 -6.05 12.18 32.99 0.40 -5.65 16 17 C 0.17 2.86 7.20 -154.02 -1.11 1.76 16 18 C 0.05 0.59 5.96 -29.03 -0.17 0.42 16 19 C 0.07 0.83 6.07 -84.22 -0.51 0.32 16 20 C -0.24 -2.23 11.07 29.12 0.32 -1.90 16 21 S 0.11 0.88 23.22 -107.50 -2.50 -1.62 16 22 C 0.02 0.23 12.23 51.58 0.63 0.86 16 23 N -0.46 -5.56 10.08 -11.90 -0.12 -5.68 16 24 N -0.45 -8.09 2.81 -114.08 -0.32 -8.41 16 25 C 0.15 2.20 6.15 -4.04 -0.02 2.17 16 26 C -0.17 -2.33 6.01 -90.62 -0.54 -2.87 16 27 C -0.18 -1.95 10.18 -26.73 -0.27 -2.22 16 28 C -0.16 -1.89 10.25 -26.73 -0.27 -2.16 16 29 H 0.03 0.77 6.59 -51.93 -0.34 0.43 16 30 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 31 H 0.04 0.94 6.01 -51.93 -0.31 0.62 16 32 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 33 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.09 1.86 6.62 -51.93 -0.34 1.52 16 35 H 0.04 0.82 6.67 -51.93 -0.35 0.48 16 36 H 0.11 1.13 8.03 -51.93 -0.42 0.71 16 37 H 0.10 1.02 7.98 -51.93 -0.41 0.61 16 38 H 0.18 1.23 8.06 -52.49 -0.42 0.81 16 39 H 0.20 1.21 8.06 -52.48 -0.42 0.78 16 40 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 41 H 0.10 1.22 7.42 -51.93 -0.39 0.83 16 42 H 0.11 1.97 8.14 -51.93 -0.42 1.55 16 43 H 0.09 0.86 8.03 -51.93 -0.42 0.44 16 44 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 46 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 LS Contribution 390.39 15.07 5.88 5.88 Total: -1.00 -32.75 390.39 -11.85 -44.59 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -6.61 Total: 4.59 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: -3.66 Total: -6.75 kcal Atomic # 7 Polarization: -62.74 SS G_CDS: 0.05 Total: -62.69 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: 0.88 SS G_CDS: -2.50 Total: -1.62 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.75 -11.85 -44.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650541394.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 214.926 kcal (2) G-P(sol) polarization free energy of solvation -32.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 182.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 170.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds