Wall clock time and date at job start Wed Apr 1 2020 04:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.47043 * 2 1 4 4 C 1.50696 * 109.47246 * 119.99648 * 2 1 3 5 5 H 1.08001 * 119.99507 * 119.99745 * 4 2 1 6 6 C 1.37882 * 120.00369 * 300.00448 * 4 2 1 7 7 N 1.31509 * 119.99383 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 119.99904 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47393 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47152 * 119.99947 * 8 6 4 11 11 H 1.48502 * 109.46750 * 239.99863 * 8 6 4 12 12 N 1.46893 * 109.47036 * 240.00058 * 2 1 3 13 13 C 1.46899 * 111.00372 * 306.04511 * 12 2 1 14 14 C 1.38580 * 111.00005 * 69.99952 * 12 2 1 15 15 N 1.31222 * 126.47525 * 293.13675 * 14 12 2 16 16 N 1.28531 * 109.85893 * 179.97438 * 15 14 12 17 17 C 1.30286 * 110.05550 * 0.02562 * 16 15 14 18 18 C 1.50704 * 126.34644 * 179.97438 * 17 16 15 19 19 C 1.50701 * 109.47011 * 270.03624 * 18 17 16 20 20 C 1.33638 * 122.74977 * 124.72775 * 19 18 17 21 21 S 1.76204 * 107.92404 * 179.97438 * 20 19 18 22 22 C 1.70978 * 90.28091 * 0.27768 * 21 20 19 23 23 N 1.29024 * 110.16863 * 359.83818 * 22 21 20 24 24 N 1.36453 * 126.47437 * 113.11505 * 14 12 2 25 25 C 1.46508 * 127.13710 * 0.28321 * 24 14 12 26 26 C 1.53003 * 109.46933 * 267.34445 * 25 24 14 27 27 C 1.52995 * 117.49468 * 243.62036 * 26 25 24 28 28 C 1.52996 * 117.49654 * 174.99898 * 26 25 24 29 29 H 1.08994 * 109.47411 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47235 * 300.00176 * 1 2 3 31 31 H 1.09001 * 109.47124 * 59.99791 * 1 2 3 32 32 H 0.97007 * 119.99214 * 180.02562 * 7 6 4 33 33 H 1.08992 * 109.47408 * 191.69427 * 13 12 2 34 34 H 1.09001 * 109.46777 * 311.69640 * 13 12 2 35 35 H 1.09004 * 109.46837 * 71.68815 * 13 12 2 36 36 H 1.08994 * 109.47170 * 30.03371 * 18 17 16 37 37 H 1.08994 * 109.47455 * 150.03871 * 18 17 16 38 38 H 1.07994 * 126.03678 * 0.04571 * 20 19 18 39 39 H 1.08004 * 124.91859 * 179.84031 * 22 21 20 40 40 H 1.09003 * 109.46603 * 27.33737 * 25 24 14 41 41 H 1.08994 * 109.47370 * 147.34248 * 25 24 14 42 42 H 1.08997 * 115.55056 * 29.32844 * 26 25 24 43 43 H 1.09000 * 117.50163 * 359.97438 * 27 26 25 44 44 H 1.09007 * 117.49633 * 145.02456 * 27 26 25 45 45 H 1.08997 * 117.49960 * 214.97646 * 28 26 25 46 46 H 1.09002 * 117.50035 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1313 6 6 1.6992 -0.2393 2.4828 7 7 0.9435 0.8302 2.6033 8 14 2.3214 -1.1203 4.0079 9 1 3.1456 -2.2876 3.6037 10 1 3.1466 -0.1873 4.8165 11 1 1.1661 -1.5866 4.8160 12 7 2.0196 -0.6925 -1.1994 13 6 1.4343 -2.0354 -1.3078 14 6 1.7679 0.0526 -2.3405 15 7 0.5897 0.3275 -2.8485 16 7 0.7271 1.0404 -3.9091 17 6 1.9905 1.2603 -4.1391 18 6 2.5650 2.0525 -5.2852 19 6 2.8185 1.1346 -6.4532 20 6 2.3079 1.3533 -7.6686 21 16 2.8485 0.0518 -8.7262 22 6 3.7006 -0.6615 -7.4268 23 7 3.5565 0.0469 -6.3581 24 7 2.6985 0.6392 -3.1478 25 6 4.1546 0.6050 -2.9892 26 6 4.6091 1.8267 -2.1881 27 6 5.5184 2.8352 -2.8929 28 6 6.0897 1.9144 -1.8128 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 0.7094 1.1618 3.4844 33 1 1.9615 -2.6006 -2.0763 34 1 1.5259 -2.5499 -0.3513 35 1 0.3811 -1.9521 -1.5762 36 1 1.8593 2.8291 -5.5799 37 1 3.5030 2.5127 -4.9747 38 1 1.6764 2.1821 -7.9528 39 1 4.2763 -1.5730 -7.4912 40 1 4.4411 -0.3037 -2.4599 41 1 4.6274 0.6180 -3.9712 42 1 3.8847 2.2158 -1.4726 43 1 5.7932 2.6282 -3.9271 44 1 5.3923 3.8883 -2.6412 45 1 6.3394 2.3616 -0.8507 46 1 6.7400 1.1016 -2.1363 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650541394.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:55 Heat of formation + Delta-G solvation = 152.535792 kcal Electronic energy + Delta-G solvation = -29021.657133 eV Core-core repulsion = 25268.637329 eV Total energy + Delta-G solvation = -3753.019804 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.148 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.94319 -40.75585 -38.98526 -38.66855 -35.31861 -34.94618 -33.78997 -31.20049 -30.40009 -28.72371 -28.15465 -27.28183 -26.89520 -25.74902 -23.43538 -23.14975 -22.54120 -21.83698 -20.88749 -20.50981 -18.99769 -18.44015 -18.01396 -17.55256 -17.01872 -16.73119 -16.37687 -16.08331 -15.90328 -15.48948 -15.15502 -14.91549 -14.81808 -14.39519 -14.28514 -14.11348 -13.82327 -13.54028 -13.38179 -13.09175 -13.01694 -12.90093 -12.75006 -12.62984 -12.42290 -12.38323 -12.33889 -12.14028 -12.01705 -11.59797 -11.52542 -11.00975 -10.96439 -10.83086 -10.59643 -10.54021 -10.37619 -9.97715 -9.74467 -9.46523 -8.14381 -6.27806 -0.18740 0.50703 0.73128 0.89470 1.36330 1.43110 1.44912 1.57132 1.78160 1.90580 2.41468 2.80202 3.05957 3.15761 3.20252 3.46304 3.67498 3.77879 3.91684 4.02968 4.10014 4.13789 4.17188 4.36802 4.45719 4.48059 4.54511 4.59137 4.61594 4.65376 4.71837 4.75081 4.92363 4.97887 4.98989 5.06002 5.09011 5.11128 5.16948 5.18381 5.24337 5.40780 5.60954 5.66041 5.86979 6.05983 6.20800 6.65421 6.78068 6.81956 7.41075 7.78869 8.92770 Molecular weight = 347.15amu Principal moments of inertia in cm(-1) A = 0.015397 B = 0.003142 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.123957 B = 8908.188241 C = 9695.102394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.243 3.757 3 H -0.008 1.008 4 C -0.514 4.514 5 H 0.069 0.931 6 C 0.013 3.987 7 N -0.921 5.921 8 Si 0.968 3.032 9 H -0.261 1.261 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.465 5.465 13 C 0.052 3.948 14 C 0.353 3.647 15 N -0.349 5.349 16 N -0.330 5.330 17 C 0.194 3.806 18 C 0.050 3.950 19 C 0.047 3.953 20 C -0.244 4.244 21 S 0.165 5.835 22 C 0.013 3.987 23 N -0.498 5.498 24 N -0.449 5.449 25 C 0.155 3.845 26 C -0.195 4.195 27 C -0.153 4.153 28 C -0.157 4.157 29 H 0.033 0.967 30 H 0.060 0.940 31 H 0.030 0.970 32 H 0.262 0.738 33 H 0.067 0.933 34 H 0.085 0.915 35 H 0.026 0.974 36 H 0.132 0.868 37 H 0.117 0.883 38 H 0.202 0.798 39 H 0.221 0.779 40 H 0.090 0.910 41 H 0.121 0.879 42 H 0.067 0.933 43 H 0.119 0.881 44 H 0.101 0.899 45 H 0.094 0.906 46 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.667 1.291 -23.068 25.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.137 3.863 3 H 0.010 0.990 4 C -0.553 4.553 5 H 0.087 0.913 6 C -0.186 4.186 7 N -0.561 5.561 8 Si 0.793 3.207 9 H -0.185 1.185 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.191 5.191 13 C -0.096 4.096 14 C -0.005 4.005 15 N -0.192 5.192 16 N -0.170 5.170 17 C -0.075 4.075 18 C 0.008 3.992 19 C -0.085 4.085 20 C -0.383 4.383 21 S 0.418 5.582 22 C -0.285 4.285 23 N -0.213 5.213 24 N -0.140 5.140 25 C 0.034 3.966 26 C -0.214 4.214 27 C -0.189 4.189 28 C -0.194 4.194 29 H 0.052 0.948 30 H 0.079 0.921 31 H 0.049 0.951 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.104 0.896 35 H 0.045 0.955 36 H 0.150 0.850 37 H 0.135 0.865 38 H 0.219 0.781 39 H 0.238 0.762 40 H 0.108 0.892 41 H 0.139 0.861 42 H 0.086 0.914 43 H 0.137 0.863 44 H 0.119 0.881 45 H 0.113 0.887 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 10.768 0.897 -23.621 25.975 hybrid contribution 0.085 0.263 2.288 2.304 sum 10.852 1.161 -21.333 23.963 Atomic orbital electron populations 1.22243 0.99458 0.99574 1.00269 1.18966 0.90550 0.91829 0.84979 0.98993 1.21266 1.31264 1.12886 0.89846 0.91328 1.25754 0.95085 0.95690 1.02053 1.70072 1.37569 1.24256 1.24176 0.85355 0.78035 0.78662 0.78670 1.18479 1.20750 1.20769 1.59241 1.59013 1.02855 0.97984 1.22210 0.96928 0.87547 1.02887 1.22797 0.84717 0.98725 0.94224 1.74563 1.21404 1.16343 1.06928 1.73826 1.16123 1.15685 1.11396 1.24888 0.88388 1.00347 0.93907 1.18682 1.02954 0.93280 0.84322 1.19942 0.98677 0.94989 0.94891 1.27193 1.08542 1.06442 0.96130 1.83876 1.43247 1.16286 1.14797 1.28809 1.03861 1.04811 0.90986 1.66039 1.18633 1.06144 1.30435 1.46343 1.09086 1.38703 1.19828 1.21458 0.74354 0.98719 1.02117 1.22377 0.95298 0.99750 1.03979 1.23196 1.00857 0.96377 0.98502 1.23006 0.92988 1.03025 1.00413 0.94761 0.92079 0.95129 0.92862 0.91432 0.89617 0.95544 0.84957 0.86536 0.78110 0.76236 0.89202 0.86131 0.91438 0.86325 0.88093 0.88726 0.86724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -8.52 8.18 71.98 0.59 -7.93 16 2 C 0.24 13.08 2.28 44.17 0.10 13.18 16 3 H -0.01 -0.48 8.05 -2.38 -0.02 -0.50 16 4 C -0.51 -28.29 7.80 25.60 0.20 -28.09 16 5 H 0.07 3.66 7.20 -2.91 -0.02 3.64 16 6 C 0.01 0.73 5.30 84.66 0.45 1.17 16 7 N -0.92 -54.13 11.32 21.45 0.24 -53.88 16 8 Si 0.97 43.42 29.54 68.60 2.03 45.45 16 9 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 10 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 11 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 12 N -0.47 -21.62 4.73 -711.02 -3.37 -24.98 16 13 C 0.05 2.18 8.49 127.69 1.08 3.26 16 14 C 0.35 15.77 6.26 260.11 1.63 17.40 16 15 N -0.35 -16.62 9.81 -58.00 -0.57 -17.19 16 16 N -0.33 -13.98 12.18 -49.54 -0.60 -14.59 16 17 C 0.19 6.61 7.20 137.64 0.99 7.60 16 18 C 0.05 1.10 5.96 29.10 0.17 1.28 16 19 C 0.05 0.99 6.07 41.52 0.25 1.24 16 20 C -0.24 -3.81 11.07 66.78 0.74 -3.07 16 21 S 0.17 2.05 23.22 -56.49 -1.31 0.74 16 22 C 0.01 0.20 12.23 130.66 1.60 1.80 16 23 N -0.50 -10.95 10.08 -191.55 -1.93 -12.88 16 24 N -0.45 -16.31 2.81 -514.83 -1.45 -17.76 16 25 C 0.16 4.52 6.15 86.38 0.53 5.05 16 26 C -0.19 -5.48 6.01 -10.80 -0.06 -5.55 16 27 C -0.15 -2.92 10.18 30.59 0.31 -2.60 16 28 C -0.16 -3.42 10.25 30.59 0.31 -3.10 16 29 H 0.03 1.78 6.59 -2.39 -0.02 1.76 16 30 H 0.06 3.62 6.07 -2.39 -0.01 3.60 16 31 H 0.03 1.66 6.01 -2.39 -0.01 1.65 16 32 H 0.26 14.59 8.31 -92.70 -0.77 13.82 16 33 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 34 H 0.09 3.62 6.62 -2.39 -0.02 3.60 16 35 H 0.03 1.15 6.67 -2.39 -0.02 1.14 16 36 H 0.13 2.38 8.03 -2.39 -0.02 2.36 16 37 H 0.12 2.12 7.98 -2.39 -0.02 2.10 16 38 H 0.20 2.09 8.06 -2.91 -0.02 2.07 16 39 H 0.22 2.09 8.06 -2.91 -0.02 2.07 16 40 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16 41 H 0.12 2.87 7.42 -2.39 -0.02 2.85 16 42 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 43 H 0.12 1.71 8.03 -2.39 -0.02 1.69 16 44 H 0.10 1.83 8.14 -2.38 -0.02 1.81 16 45 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 46 H 0.11 2.07 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -74.71 390.39 2.93 -71.78 By element: Atomic # 1 Polarization: 20.68 SS G_CDS: 1.00 Total: 21.68 kcal Atomic # 6 Polarization: -7.26 SS G_CDS: 8.90 Total: 1.64 kcal Atomic # 7 Polarization: -133.61 SS G_CDS: -7.67 Total: -141.28 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Atomic # 16 Polarization: 2.05 SS G_CDS: -1.31 Total: 0.74 kcal Total: -74.71 2.93 -71.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650541394.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 224.318 kcal (2) G-P(sol) polarization free energy of solvation -74.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 152.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds