Wall clock time and date at job start Wed Apr 1 2020 04:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47028 * 2 1 4 4 C 1.52994 * 109.47253 * 239.99545 * 2 1 3 5 5 C 1.53003 * 109.47343 * 175.00035 * 4 2 1 6 6 C 1.52994 * 109.47343 * 179.97438 * 5 4 2 7 7 N 1.46501 * 109.46894 * 179.97438 * 6 5 4 8 8 C 1.36938 * 119.99914 * 180.02562 * 7 6 5 9 9 H 1.08000 * 119.99910 * 0.02562 * 8 7 6 10 10 C 1.38810 * 120.00141 * 180.02562 * 8 7 6 11 11 N 1.31615 * 119.99899 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 119.99991 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47318 * 59.99920 * 12 10 8 14 14 H 1.48502 * 109.47028 * 179.97438 * 12 10 8 15 15 H 1.48495 * 109.47120 * 299.99799 * 12 10 8 16 16 N 1.46502 * 109.47033 * 119.99563 * 2 1 3 17 17 C 1.34774 * 120.00190 * 275.00506 * 16 2 1 18 18 O 1.21588 * 119.99903 * 359.97438 * 17 16 2 19 19 C 1.47612 * 120.00101 * 179.97438 * 17 16 2 20 20 C 1.39722 * 120.05695 * 0.02562 * 19 17 16 21 21 C 1.37838 * 120.11384 * 180.21724 * 20 19 17 22 22 C 1.38703 * 120.07561 * 359.48636 * 21 20 19 23 23 C 1.39680 * 120.09098 * 0.54030 * 22 21 20 24 24 C 1.38089 * 120.12599 * 359.70389 * 23 22 21 25 25 N 1.40277 * 119.24244 * 179.63064 * 23 22 21 26 26 C 1.35085 * 118.95956 * 15.58502 * 25 23 22 27 27 O 1.21302 * 120.13717 * 181.61935 * 26 25 23 28 28 C 1.50748 * 119.71899 * 1.63397 * 26 25 23 29 29 O 1.35845 * 120.51949 * 180.33130 * 22 21 20 30 30 H 1.08997 * 109.47367 * 60.00435 * 1 2 3 31 31 H 1.09007 * 109.47148 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47773 * 300.00135 * 1 2 3 33 33 H 1.09000 * 109.47327 * 294.99967 * 4 2 1 34 34 H 1.08997 * 109.47038 * 55.00065 * 4 2 1 35 35 H 1.09000 * 109.46853 * 300.00222 * 5 4 2 36 36 H 1.09002 * 109.46981 * 59.99550 * 5 4 2 37 37 H 1.09000 * 109.47327 * 299.99932 * 6 5 4 38 38 H 1.09005 * 109.46811 * 60.00196 * 6 5 4 39 39 H 0.96994 * 120.00376 * 0.02562 * 7 6 5 40 40 H 0.96999 * 119.99991 * 179.97438 * 11 10 8 41 41 H 0.97005 * 119.99918 * 95.00212 * 16 2 1 42 42 H 1.08002 * 119.93961 * 359.93181 * 20 19 17 43 43 H 1.07998 * 119.96671 * 179.71591 * 21 20 19 44 44 H 1.08003 * 120.14655 * 180.02562 * 24 23 22 45 45 H 0.96998 * 120.51642 * 195.55222 * 25 23 22 46 46 H 1.08994 * 109.44317 * 208.54431 * 28 26 25 47 47 H 1.09004 * 109.41481 * 88.63333 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5648 -0.6134 -1.3136 6 6 4.0749 -1.3352 -2.5624 7 7 5.5349 -1.2313 -2.6243 8 6 6.2188 -1.8055 -3.6625 9 1 5.6817 -2.3346 -4.4359 10 6 7.6022 -1.7075 -3.7210 11 7 8.2567 -1.0631 -2.7783 12 14 8.5349 -2.4902 -5.1377 13 1 8.0787 -1.8953 -6.4195 14 1 9.9896 -2.2442 -4.9684 15 1 8.2780 -3.9527 -5.1515 16 7 2.0183 -0.6905 1.1962 17 6 2.1469 -0.0182 2.3572 18 8 1.8581 1.1617 2.4116 19 6 2.6384 -0.7141 3.5626 20 6 2.9711 -2.0697 3.5013 21 6 3.4259 -2.7218 4.6273 22 6 3.5647 -2.0312 5.8221 23 6 3.2332 -0.6760 5.8902 24 6 2.7722 -0.0179 4.7672 25 7 3.3730 0.0032 7.1096 26 6 4.1097 -0.5606 8.0916 27 8 4.2206 -0.0059 9.1647 28 6 4.7936 -1.8817 7.8481 29 8 4.0185 -2.6633 6.9356 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.7517 -1.7716 -1.2054 34 1 1.6054 -0.2619 -2.1369 35 1 3.8532 0.4369 -1.3573 36 1 3.9994 -1.0728 -0.4258 37 1 3.7866 -2.3855 -2.5182 38 1 3.6403 -0.8761 -3.4504 39 1 6.0172 -0.7558 -1.9300 40 1 9.2234 -0.9950 -2.8190 41 1 2.2490 -1.6317 1.1527 42 1 2.8674 -2.6087 2.5711 43 1 3.6781 -3.7708 4.5783 44 1 2.5163 1.0300 4.8194 45 1 2.9478 0.8644 7.2453 46 1 4.8929 -2.4182 8.7917 47 1 5.7827 -1.7053 7.4253 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675915867.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:27 Heat of formation + Delta-G solvation = -75.513543 kcal Electronic energy + Delta-G solvation = -29338.617990 eV Core-core repulsion = 25100.663602 eV Total energy + Delta-G solvation = -4237.954387 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.95861 -40.29072 -39.12645 -37.84865 -36.74109 -35.65641 -34.87869 -32.73257 -31.64372 -30.97235 -30.16335 -29.39077 -28.29854 -25.73678 -24.84118 -23.51243 -23.01751 -22.05588 -20.91410 -20.77685 -19.96343 -19.45949 -18.60880 -17.64252 -17.05702 -16.96991 -16.71314 -16.40239 -15.60578 -15.23354 -15.11657 -14.90263 -14.71821 -14.63399 -14.39914 -14.21043 -13.82872 -13.70807 -13.47873 -13.40592 -13.20703 -12.99744 -12.73504 -12.23850 -12.13219 -11.89350 -11.74650 -11.35720 -11.29217 -11.18464 -10.85959 -10.82644 -10.64150 -10.50843 -10.43644 -10.12227 -10.03825 -9.69654 -9.28986 -9.15251 -8.87140 -8.50801 -6.92493 -5.76724 -3.05550 0.25303 0.64950 1.69255 2.19646 2.51982 2.72982 2.96941 3.39155 3.43257 3.44722 3.47502 3.48783 4.07177 4.34832 4.39228 4.51020 4.56334 4.63098 4.68101 4.72990 4.84327 5.00085 5.11054 5.22518 5.38574 5.38892 5.51758 5.56221 5.56599 5.59476 5.74618 5.76510 5.88387 5.95150 6.00303 6.03305 6.07877 6.17635 6.25053 6.33362 6.38845 6.40519 6.69900 6.84614 6.87940 7.23937 7.33127 7.68608 8.02861 8.42389 9.53084 10.12062 10.46223 11.46157 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009844 B = 0.002195 C = 0.001893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2843.591880 B =12755.301147 C =14787.764752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.141 3.859 3 H 0.091 0.909 4 C -0.123 4.123 5 C -0.126 4.126 6 C 0.153 3.847 7 N -0.735 5.735 8 C -0.240 4.240 9 H 0.069 0.931 10 C -0.015 4.015 11 N -0.934 5.934 12 Si 0.908 3.092 13 H -0.286 1.286 14 H -0.291 1.291 15 H -0.286 1.286 16 N -0.714 5.714 17 C 0.562 3.438 18 O -0.538 6.538 19 C -0.123 4.123 20 C -0.070 4.070 21 C -0.111 4.111 22 C 0.102 3.898 23 C 0.082 3.918 24 C -0.062 4.062 25 N -0.658 5.658 26 C 0.492 3.508 27 O -0.511 6.511 28 C 0.050 3.950 29 O -0.299 6.299 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.017 0.983 38 H 0.017 0.983 39 H 0.383 0.617 40 H 0.256 0.744 41 H 0.401 0.599 42 H 0.141 0.859 43 H 0.149 0.851 44 H 0.148 0.852 45 H 0.419 0.581 46 H 0.149 0.851 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.370 -2.677 19.208 24.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.037 3.963 3 H 0.109 0.891 4 C -0.162 4.162 5 C -0.164 4.164 6 C 0.025 3.975 7 N -0.379 5.379 8 C -0.372 4.372 9 H 0.087 0.913 10 C -0.211 4.211 11 N -0.583 5.583 12 Si 0.738 3.262 13 H -0.213 1.213 14 H -0.217 1.217 15 H -0.213 1.213 16 N -0.365 5.365 17 C 0.349 3.651 18 O -0.416 6.416 19 C -0.127 4.127 20 C -0.090 4.090 21 C -0.130 4.130 22 C 0.055 3.945 23 C -0.013 4.013 24 C -0.083 4.083 25 N -0.306 5.306 26 C 0.278 3.722 27 O -0.385 6.385 28 C -0.028 4.028 29 O -0.213 6.213 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.099 0.901 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.034 0.966 38 H 0.035 0.965 39 H 0.217 0.783 40 H 0.065 0.935 41 H 0.236 0.764 42 H 0.159 0.841 43 H 0.167 0.833 44 H 0.165 0.835 45 H 0.258 0.742 46 H 0.166 0.834 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -15.392 -1.956 19.770 25.131 hybrid contribution 0.778 -0.106 -0.533 0.949 sum -14.614 -2.062 19.237 24.246 Atomic orbital electron populations 1.22175 0.95287 1.02092 1.02515 1.21092 0.93693 0.97885 0.83617 0.89116 1.21862 0.96935 1.00803 0.96580 1.21740 0.93581 1.01529 0.99547 1.20648 0.86207 0.96422 0.94212 1.42372 1.00196 1.66230 1.29054 1.19194 0.89435 1.27208 1.01331 0.91269 1.24753 0.96466 1.01221 0.98643 1.69650 1.07268 1.46950 1.34406 0.86261 0.78986 0.78958 0.81946 1.21272 1.21676 1.21265 1.46008 1.66818 1.14193 1.09520 1.18011 0.77647 0.86429 0.83001 1.90788 1.50400 1.15380 1.85018 1.19754 1.04751 0.94239 0.93996 1.21206 0.96211 0.93094 0.98484 1.20480 1.02355 1.01513 0.88663 1.18853 0.98844 0.89032 0.87776 1.17876 1.05129 0.91393 0.86951 1.20666 0.97767 1.00596 0.89281 1.43736 1.50810 1.23786 1.12249 1.21548 0.78983 0.87961 0.83659 1.90836 1.59896 1.64135 1.23633 1.23262 0.94885 0.88943 0.95728 1.86222 1.67471 1.37483 1.30090 0.91430 0.92449 0.92283 0.91345 0.90132 0.91908 0.92049 0.96564 0.96514 0.78336 0.93464 0.76350 0.84085 0.83320 0.83471 0.74177 0.83388 0.87745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 9.48 37.16 0.35 -1.10 16 2 C 0.14 1.47 2.57 -67.93 -0.17 1.29 16 3 H 0.09 1.13 7.58 -51.93 -0.39 0.74 16 4 C -0.12 -1.33 4.75 -26.73 -0.13 -1.45 16 5 C -0.13 -1.88 5.22 -26.73 -0.14 -2.01 16 6 C 0.15 2.95 6.26 -4.04 -0.03 2.93 16 7 N -0.73 -18.59 5.60 -59.91 -0.34 -18.92 16 8 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 9 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 10 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 11 N -0.93 -28.32 13.06 55.49 0.72 -27.59 16 12 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 16 13 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 14 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 15 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 16 N -0.71 -6.98 4.48 -54.83 -0.25 -7.22 16 17 C 0.56 6.49 7.73 -12.44 -0.10 6.39 16 18 O -0.54 -8.00 16.00 5.29 0.08 -7.91 16 19 C -0.12 -1.17 5.88 -104.95 -0.62 -1.79 16 20 C -0.07 -0.52 9.53 -39.17 -0.37 -0.89 16 21 C -0.11 -0.80 9.98 -39.56 -0.39 -1.20 16 22 C 0.10 0.85 6.45 -38.87 -0.25 0.60 16 23 C 0.08 0.70 6.54 -83.51 -0.55 0.15 16 24 C -0.06 -0.56 9.49 -39.06 -0.37 -0.93 16 25 N -0.66 -5.29 5.48 -9.68 -0.05 -5.34 16 26 C 0.49 4.35 7.94 -10.82 -0.09 4.26 16 27 O -0.51 -6.08 17.95 5.54 0.10 -5.98 16 28 C 0.05 0.31 7.16 36.03 0.26 0.57 16 29 O -0.30 -2.35 10.44 -19.25 -0.20 -2.55 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.06 0.91 7.75 -51.93 -0.40 0.51 16 37 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.38 10.23 7.67 -40.82 -0.31 9.92 16 40 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 41 H 0.40 3.05 6.62 -40.82 -0.27 2.78 16 42 H 0.14 0.74 6.38 -52.49 -0.34 0.40 16 43 H 0.15 0.79 8.06 -52.49 -0.42 0.37 16 44 H 0.15 1.31 7.65 -52.48 -0.40 0.91 16 45 H 0.42 2.79 8.89 -40.82 -0.36 2.42 16 46 H 0.15 0.60 8.14 -51.93 -0.42 0.17 16 47 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 LS Contribution 396.50 15.07 5.98 5.98 Total: -1.00 -35.92 396.50 -8.49 -44.41 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -6.67 Total: 8.46 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: -2.84 Total: -0.61 kcal Atomic # 7 Polarization: -59.17 SS G_CDS: 0.09 Total: -59.08 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: -0.02 Total: -16.44 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -35.92 -8.49 -44.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675915867.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.106 kcal (2) G-P(sol) polarization free energy of solvation -35.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds