Wall clock time and date at job start Wed Apr 1 2020 04:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47028 * 2 1 4 4 C 1.52994 * 109.47253 * 239.99545 * 2 1 3 5 5 C 1.53003 * 109.47343 * 175.00035 * 4 2 1 6 6 C 1.52994 * 109.47343 * 179.97438 * 5 4 2 7 7 N 1.46501 * 109.46894 * 179.97438 * 6 5 4 8 8 C 1.36938 * 119.99914 * 180.02562 * 7 6 5 9 9 H 1.08000 * 119.99910 * 0.02562 * 8 7 6 10 10 C 1.38810 * 120.00141 * 180.02562 * 8 7 6 11 11 N 1.31615 * 119.99899 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 119.99991 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47318 * 59.99920 * 12 10 8 14 14 H 1.48502 * 109.47028 * 179.97438 * 12 10 8 15 15 H 1.48495 * 109.47120 * 299.99799 * 12 10 8 16 16 N 1.46502 * 109.47033 * 119.99563 * 2 1 3 17 17 C 1.34774 * 120.00190 * 275.00506 * 16 2 1 18 18 O 1.21588 * 119.99903 * 359.97438 * 17 16 2 19 19 C 1.47612 * 120.00101 * 179.97438 * 17 16 2 20 20 C 1.39722 * 120.05695 * 0.02562 * 19 17 16 21 21 C 1.37838 * 120.11384 * 180.21724 * 20 19 17 22 22 C 1.38703 * 120.07561 * 359.48636 * 21 20 19 23 23 C 1.39680 * 120.09098 * 0.54030 * 22 21 20 24 24 C 1.38089 * 120.12599 * 359.70389 * 23 22 21 25 25 N 1.40277 * 119.24244 * 179.63064 * 23 22 21 26 26 C 1.35085 * 118.95956 * 15.58502 * 25 23 22 27 27 O 1.21302 * 120.13717 * 181.61935 * 26 25 23 28 28 C 1.50748 * 119.71899 * 1.63397 * 26 25 23 29 29 O 1.35845 * 120.51949 * 180.33130 * 22 21 20 30 30 H 1.08997 * 109.47367 * 60.00435 * 1 2 3 31 31 H 1.09007 * 109.47148 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47773 * 300.00135 * 1 2 3 33 33 H 1.09000 * 109.47327 * 294.99967 * 4 2 1 34 34 H 1.08997 * 109.47038 * 55.00065 * 4 2 1 35 35 H 1.09000 * 109.46853 * 300.00222 * 5 4 2 36 36 H 1.09002 * 109.46981 * 59.99550 * 5 4 2 37 37 H 1.09000 * 109.47327 * 299.99932 * 6 5 4 38 38 H 1.09005 * 109.46811 * 60.00196 * 6 5 4 39 39 H 0.96994 * 120.00376 * 0.02562 * 7 6 5 40 40 H 0.96999 * 119.99991 * 179.97438 * 11 10 8 41 41 H 0.97005 * 119.99918 * 95.00212 * 16 2 1 42 42 H 1.08002 * 119.93961 * 359.93181 * 20 19 17 43 43 H 1.07998 * 119.96671 * 179.71591 * 21 20 19 44 44 H 1.08003 * 120.14655 * 180.02562 * 24 23 22 45 45 H 0.96998 * 120.51642 * 195.55222 * 25 23 22 46 46 H 1.08994 * 109.44317 * 208.54431 * 28 26 25 47 47 H 1.09004 * 109.41481 * 88.63333 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5648 -0.6134 -1.3136 6 6 4.0749 -1.3352 -2.5624 7 7 5.5349 -1.2313 -2.6243 8 6 6.2188 -1.8055 -3.6625 9 1 5.6817 -2.3346 -4.4359 10 6 7.6022 -1.7075 -3.7210 11 7 8.2567 -1.0631 -2.7783 12 14 8.5349 -2.4902 -5.1377 13 1 8.0787 -1.8953 -6.4195 14 1 9.9896 -2.2442 -4.9684 15 1 8.2780 -3.9527 -5.1515 16 7 2.0183 -0.6905 1.1962 17 6 2.1469 -0.0182 2.3572 18 8 1.8581 1.1617 2.4116 19 6 2.6384 -0.7141 3.5626 20 6 2.9711 -2.0697 3.5013 21 6 3.4259 -2.7218 4.6273 22 6 3.5647 -2.0312 5.8221 23 6 3.2332 -0.6760 5.8902 24 6 2.7722 -0.0179 4.7672 25 7 3.3730 0.0032 7.1096 26 6 4.1097 -0.5606 8.0916 27 8 4.2206 -0.0059 9.1647 28 6 4.7936 -1.8817 7.8481 29 8 4.0185 -2.6633 6.9356 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.7517 -1.7716 -1.2054 34 1 1.6054 -0.2619 -2.1369 35 1 3.8532 0.4369 -1.3573 36 1 3.9994 -1.0728 -0.4258 37 1 3.7866 -2.3855 -2.5182 38 1 3.6403 -0.8761 -3.4504 39 1 6.0172 -0.7558 -1.9300 40 1 9.2234 -0.9950 -2.8190 41 1 2.2490 -1.6317 1.1527 42 1 2.8674 -2.6087 2.5711 43 1 3.6781 -3.7708 4.5783 44 1 2.5163 1.0300 4.8194 45 1 2.9478 0.8644 7.2453 46 1 4.8929 -2.4182 8.7917 47 1 5.7827 -1.7053 7.4253 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675915867.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:26 Heat of formation + Delta-G solvation = -101.765392 kcal Electronic energy + Delta-G solvation = -29339.756355 eV Core-core repulsion = 25100.663602 eV Total energy + Delta-G solvation = -4239.092753 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.59924 -41.13051 -39.86554 -38.53566 -37.81384 -36.49540 -36.33432 -34.18833 -32.83049 -31.81051 -31.09728 -30.52618 -28.90214 -27.20286 -25.61923 -24.75092 -24.06247 -22.93450 -22.27461 -21.68941 -20.69078 -20.09702 -19.30412 -19.08963 -18.29552 -17.71804 -17.48684 -17.16179 -16.63847 -16.23467 -16.06566 -15.98532 -15.74592 -15.48098 -15.33568 -15.31030 -15.04476 -14.98219 -14.44039 -14.28679 -14.13476 -13.81645 -13.77393 -13.39230 -13.14996 -12.98324 -12.72066 -12.49558 -12.38446 -12.34403 -12.25645 -12.06137 -11.97032 -11.82331 -11.68131 -11.46313 -11.35799 -11.03325 -10.89683 -10.13349 -9.83963 -9.16245 -8.97784 -7.93607 -5.22540 -0.42608 0.00274 1.03838 1.48633 1.51798 1.56878 1.57954 1.76891 2.07947 2.22872 2.57737 2.69325 2.82922 3.40086 3.44672 3.60297 3.71848 3.94316 3.99592 4.02179 4.05723 4.07523 4.15655 4.31925 4.33129 4.45238 4.61709 4.64112 4.72207 4.78820 4.86926 4.91321 4.92431 4.96717 5.05138 5.13426 5.17501 5.31350 5.35768 5.36797 5.41435 5.46996 5.53816 5.59947 5.62234 6.08709 6.28986 6.53887 6.58082 7.19965 7.34648 8.12813 8.34176 9.29927 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009844 B = 0.002195 C = 0.001893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2843.591880 B =12755.301147 C =14787.764752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.143 3.857 3 H 0.065 0.935 4 C -0.110 4.110 5 C -0.114 4.114 6 C 0.149 3.851 7 N -0.751 5.751 8 C -0.246 4.246 9 H 0.077 0.923 10 C -0.079 4.079 11 N -0.971 5.971 12 Si 0.974 3.026 13 H -0.279 1.279 14 H -0.297 1.297 15 H -0.275 1.275 16 N -0.704 5.704 17 C 0.559 3.441 18 O -0.581 6.581 19 C -0.140 4.140 20 C -0.060 4.060 21 C -0.108 4.108 22 C 0.098 3.902 23 C 0.075 3.925 24 C -0.069 4.069 25 N -0.657 5.657 26 C 0.489 3.511 27 O -0.548 6.548 28 C 0.051 3.949 29 O -0.301 6.301 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.043 0.957 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.043 0.957 36 H 0.061 0.939 37 H 0.029 0.971 38 H 0.018 0.982 39 H 0.372 0.628 40 H 0.251 0.749 41 H 0.413 0.587 42 H 0.166 0.834 43 H 0.174 0.826 44 H 0.140 0.860 45 H 0.421 0.579 46 H 0.172 0.828 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.157 -5.138 18.444 25.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.039 3.961 3 H 0.083 0.917 4 C -0.148 4.148 5 C -0.152 4.152 6 C 0.023 3.977 7 N -0.393 5.393 8 C -0.378 4.378 9 H 0.095 0.905 10 C -0.271 4.271 11 N -0.622 5.622 12 Si 0.803 3.197 13 H -0.205 1.205 14 H -0.223 1.223 15 H -0.200 1.200 16 N -0.356 5.356 17 C 0.348 3.652 18 O -0.462 6.462 19 C -0.144 4.144 20 C -0.080 4.080 21 C -0.127 4.127 22 C 0.051 3.949 23 C -0.020 4.020 24 C -0.090 4.090 25 N -0.304 5.304 26 C 0.277 3.723 27 O -0.425 6.425 28 C -0.026 4.026 29 O -0.215 6.215 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.062 0.938 33 H 0.111 0.889 34 H 0.108 0.892 35 H 0.062 0.938 36 H 0.080 0.920 37 H 0.047 0.953 38 H 0.036 0.964 39 H 0.203 0.797 40 H 0.060 0.940 41 H 0.252 0.748 42 H 0.184 0.816 43 H 0.191 0.809 44 H 0.158 0.842 45 H 0.261 0.739 46 H 0.189 0.811 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -16.234 -4.465 18.965 25.361 hybrid contribution 0.961 0.656 -0.298 1.201 sum -15.273 -3.809 18.667 24.418 Atomic orbital electron populations 1.22102 0.93710 1.03196 1.02309 1.21002 0.94821 0.96602 0.83656 0.91704 1.21761 0.93524 1.02448 0.97041 1.21604 0.96496 0.99654 0.97418 1.20873 0.83055 0.97551 0.96212 1.42652 1.02618 1.65873 1.28156 1.19638 0.89977 1.26353 1.01825 0.90492 1.25605 0.97574 1.02501 1.01386 1.69815 1.07065 1.48875 1.36470 0.85200 0.77029 0.78495 0.78982 1.20483 1.22291 1.20044 1.45945 1.66104 1.14713 1.08882 1.18342 0.77029 0.86016 0.83855 1.90763 1.52448 1.17252 1.85725 1.19687 1.06244 0.95255 0.93171 1.21459 0.94760 0.92080 0.99661 1.20777 1.01429 1.02545 0.87913 1.19096 0.98490 0.88867 0.88425 1.17884 1.05607 0.91762 0.86727 1.20654 0.98153 1.00485 0.89711 1.43777 1.50527 1.23944 1.12150 1.22066 0.78543 0.88627 0.83040 1.90816 1.61347 1.65373 1.24996 1.23495 0.94922 0.87608 0.96618 1.86223 1.67675 1.37600 1.30000 0.90373 0.90617 0.93813 0.88943 0.89170 0.93777 0.92023 0.95341 0.96446 0.79704 0.94046 0.74845 0.81630 0.80880 0.84210 0.73886 0.81062 0.85840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.49 9.48 71.98 0.68 -1.81 16 2 C 0.14 2.80 2.57 44.99 0.12 2.92 16 3 H 0.06 1.64 7.58 -2.39 -0.02 1.62 16 4 C -0.11 -2.08 4.75 30.59 0.15 -1.94 16 5 C -0.11 -3.24 5.22 30.59 0.16 -3.08 16 6 C 0.15 5.54 6.26 86.38 0.54 6.08 16 7 N -0.75 -37.74 5.60 -343.45 -1.92 -39.66 16 8 C -0.25 -13.63 9.99 84.03 0.84 -12.79 16 9 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 10 C -0.08 -4.50 5.50 84.86 0.47 -4.03 16 11 N -0.97 -59.48 13.06 21.65 0.28 -59.20 16 12 Si 0.97 45.58 29.55 68.60 2.03 47.61 16 13 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 14 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 15 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 16 N -0.70 -12.82 4.48 -445.64 -2.00 -14.82 16 17 C 0.56 12.87 7.73 86.72 0.67 13.54 16 18 O -0.58 -17.96 16.00 -3.99 -0.06 -18.03 16 19 C -0.14 -2.57 5.88 -20.07 -0.12 -2.69 16 20 C -0.06 -0.76 9.53 22.53 0.21 -0.55 16 21 C -0.11 -1.28 9.98 22.29 0.22 -1.06 16 22 C 0.10 1.48 6.45 22.73 0.15 1.63 16 23 C 0.08 1.26 6.54 38.10 0.25 1.51 16 24 C -0.07 -1.28 9.49 22.60 0.21 -1.06 16 25 N -0.66 -10.70 5.48 -302.74 -1.66 -12.36 16 26 C 0.49 8.52 7.94 87.62 0.70 9.21 16 27 O -0.55 -13.24 17.95 -3.10 -0.06 -13.30 16 28 C 0.05 0.55 7.16 71.25 0.51 1.06 16 29 O -0.30 -4.13 10.44 -91.81 -0.96 -5.09 16 30 H 0.08 1.09 8.14 -2.39 -0.02 1.08 16 31 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 32 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.09 1.60 8.14 -2.39 -0.02 1.59 16 35 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.06 1.75 7.75 -2.39 -0.02 1.73 16 37 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.02 0.66 8.14 -2.38 -0.02 0.64 16 39 H 0.37 20.08 7.67 -92.71 -0.71 19.37 16 40 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 41 H 0.41 5.22 6.62 -92.70 -0.61 4.60 16 42 H 0.17 1.18 6.38 -2.91 -0.02 1.16 16 43 H 0.17 1.21 8.06 -2.91 -0.02 1.18 16 44 H 0.14 2.72 7.65 -2.91 -0.02 2.69 16 45 H 0.42 6.00 8.89 -92.71 -0.82 5.18 16 46 H 0.17 1.03 8.14 -2.39 -0.02 1.01 16 47 H 0.12 0.90 8.14 -2.38 -0.02 0.88 16 Total: -1.00 -78.50 396.50 0.29 -78.20 By element: Atomic # 1 Polarization: 30.82 SS G_CDS: -1.12 Total: 29.70 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: 5.76 Total: 6.93 kcal Atomic # 7 Polarization: -120.75 SS G_CDS: -5.30 Total: -126.04 kcal Atomic # 8 Polarization: -35.33 SS G_CDS: -1.08 Total: -36.41 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -78.50 0.29 -78.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675915867.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.563 kcal (2) G-P(sol) polarization free energy of solvation -78.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds