Wall clock time and date at job start Wed Apr 1 2020 04:12:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.08995 * 109.47028 * 2 1
4 4 C 1.52994 * 109.47253 * 239.99545 * 2 1 3
5 5 C 1.53003 * 109.47343 * 175.00035 * 4 2 1
6 6 C 1.52994 * 109.47343 * 179.97438 * 5 4 2
7 7 N 1.46501 * 109.46894 * 179.97438 * 6 5 4
8 8 C 1.36938 * 119.99914 * 180.02562 * 7 6 5
9 9 H 1.08000 * 119.99910 * 0.02562 * 8 7 6
10 10 C 1.38810 * 120.00141 * 180.02562 * 8 7 6
11 11 N 1.31615 * 119.99899 * 0.02562 * 10 8 7
12 12 Si 1.86804 * 119.99991 * 180.02562 * 10 8 7
13 13 H 1.48497 * 109.47318 * 59.99920 * 12 10 8
14 14 H 1.48502 * 109.47028 * 179.97438 * 12 10 8
15 15 H 1.48495 * 109.47120 * 299.99799 * 12 10 8
16 16 N 1.46502 * 109.47033 * 119.99563 * 2 1 3
17 17 C 1.34774 * 120.00190 * 275.00506 * 16 2 1
18 18 O 1.21588 * 119.99903 * 359.97438 * 17 16 2
19 19 C 1.47612 * 120.00101 * 179.97438 * 17 16 2
20 20 C 1.39722 * 120.05695 * 0.02562 * 19 17 16
21 21 C 1.37838 * 120.11384 * 180.21724 * 20 19 17
22 22 C 1.38703 * 120.07561 * 359.48636 * 21 20 19
23 23 C 1.39680 * 120.09098 * 0.54030 * 22 21 20
24 24 C 1.38089 * 120.12599 * 359.70389 * 23 22 21
25 25 N 1.40277 * 119.24244 * 179.63064 * 23 22 21
26 26 C 1.35085 * 118.95956 * 15.58502 * 25 23 22
27 27 O 1.21302 * 120.13717 * 181.61935 * 26 25 23
28 28 C 1.50748 * 119.71899 * 1.63397 * 26 25 23
29 29 O 1.35845 * 120.51949 * 180.33130 * 22 21 20
30 30 H 1.08997 * 109.47367 * 60.00435 * 1 2 3
31 31 H 1.09007 * 109.47148 * 180.02562 * 1 2 3
32 32 H 1.08999 * 109.47773 * 300.00135 * 1 2 3
33 33 H 1.09000 * 109.47327 * 294.99967 * 4 2 1
34 34 H 1.08997 * 109.47038 * 55.00065 * 4 2 1
35 35 H 1.09000 * 109.46853 * 300.00222 * 5 4 2
36 36 H 1.09002 * 109.46981 * 59.99550 * 5 4 2
37 37 H 1.09000 * 109.47327 * 299.99932 * 6 5 4
38 38 H 1.09005 * 109.46811 * 60.00196 * 6 5 4
39 39 H 0.96994 * 120.00376 * 0.02562 * 7 6 5
40 40 H 0.96999 * 119.99991 * 179.97438 * 11 10 8
41 41 H 0.97005 * 119.99918 * 95.00212 * 16 2 1
42 42 H 1.08002 * 119.93961 * 359.93181 * 20 19 17
43 43 H 1.07998 * 119.96671 * 179.71591 * 21 20 19
44 44 H 1.08003 * 120.14655 * 180.02562 * 24 23 22
45 45 H 0.96998 * 120.51642 * 195.55222 * 25 23 22
46 46 H 1.08994 * 109.44317 * 208.54431 * 28 26 25
47 47 H 1.09004 * 109.41481 * 88.63333 * 28 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0400 -0.7213 -1.2491
5 6 3.5648 -0.6134 -1.3136
6 6 4.0749 -1.3352 -2.5624
7 7 5.5349 -1.2313 -2.6243
8 6 6.2188 -1.8055 -3.6625
9 1 5.6817 -2.3346 -4.4359
10 6 7.6022 -1.7075 -3.7210
11 7 8.2567 -1.0631 -2.7783
12 14 8.5349 -2.4902 -5.1377
13 1 8.0787 -1.8953 -6.4195
14 1 9.9896 -2.2442 -4.9684
15 1 8.2780 -3.9527 -5.1515
16 7 2.0183 -0.6905 1.1962
17 6 2.1469 -0.0182 2.3572
18 8 1.8581 1.1617 2.4116
19 6 2.6384 -0.7141 3.5626
20 6 2.9711 -2.0697 3.5013
21 6 3.4259 -2.7218 4.6273
22 6 3.5647 -2.0312 5.8221
23 6 3.2332 -0.6760 5.8902
24 6 2.7722 -0.0179 4.7672
25 7 3.3730 0.0032 7.1096
26 6 4.1097 -0.5606 8.0916
27 8 4.2206 -0.0059 9.1647
28 6 4.7936 -1.8817 7.8481
29 8 4.0185 -2.6633 6.9356
30 1 -0.3634 0.5137 -0.8900
31 1 -0.3634 -1.0277 0.0005
32 1 -0.3634 0.5138 0.8899
33 1 1.7517 -1.7716 -1.2054
34 1 1.6054 -0.2619 -2.1369
35 1 3.8532 0.4369 -1.3573
36 1 3.9994 -1.0728 -0.4258
37 1 3.7866 -2.3855 -2.5182
38 1 3.6403 -0.8761 -3.4504
39 1 6.0172 -0.7558 -1.9300
40 1 9.2234 -0.9950 -2.8190
41 1 2.2490 -1.6317 1.1527
42 1 2.8674 -2.6087 2.5711
43 1 3.6781 -3.7708 4.5783
44 1 2.5163 1.0300 4.8194
45 1 2.9478 0.8644 7.2453
46 1 4.8929 -2.4182 8.7917
47 1 5.7827 -1.7053 7.4253
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001675915867.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:12:26
Heat of formation + Delta-G solvation = -101.765392 kcal
Electronic energy + Delta-G solvation = -29339.756355 eV
Core-core repulsion = 25100.663602 eV
Total energy + Delta-G solvation = -4239.092753 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.168 amu
Computer time = 0.91 seconds
Orbital eigenvalues (eV)
-42.59924 -41.13051 -39.86554 -38.53566 -37.81384 -36.49540 -36.33432 -34.18833
-32.83049 -31.81051 -31.09728 -30.52618 -28.90214 -27.20286 -25.61923 -24.75092
-24.06247 -22.93450 -22.27461 -21.68941 -20.69078 -20.09702 -19.30412 -19.08963
-18.29552 -17.71804 -17.48684 -17.16179 -16.63847 -16.23467 -16.06566 -15.98532
-15.74592 -15.48098 -15.33568 -15.31030 -15.04476 -14.98219 -14.44039 -14.28679
-14.13476 -13.81645 -13.77393 -13.39230 -13.14996 -12.98324 -12.72066 -12.49558
-12.38446 -12.34403 -12.25645 -12.06137 -11.97032 -11.82331 -11.68131 -11.46313
-11.35799 -11.03325 -10.89683 -10.13349 -9.83963 -9.16245 -8.97784 -7.93607
-5.22540 -0.42608 0.00274 1.03838 1.48633 1.51798 1.56878 1.57954
1.76891 2.07947 2.22872 2.57737 2.69325 2.82922 3.40086 3.44672
3.60297 3.71848 3.94316 3.99592 4.02179 4.05723 4.07523 4.15655
4.31925 4.33129 4.45238 4.61709 4.64112 4.72207 4.78820 4.86926
4.91321 4.92431 4.96717 5.05138 5.13426 5.17501 5.31350 5.35768
5.36797 5.41435 5.46996 5.53816 5.59947 5.62234 6.08709 6.28986
6.53887 6.58082 7.19965 7.34648 8.12813 8.34176 9.29927
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.009844 B = 0.002195 C = 0.001893
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2843.591880 B =12755.301147 C =14787.764752
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.155 4.155
2 C 0.143 3.857
3 H 0.065 0.935
4 C -0.110 4.110
5 C -0.114 4.114
6 C 0.149 3.851
7 N -0.751 5.751
8 C -0.246 4.246
9 H 0.077 0.923
10 C -0.079 4.079
11 N -0.971 5.971
12 Si 0.974 3.026
13 H -0.279 1.279
14 H -0.297 1.297
15 H -0.275 1.275
16 N -0.704 5.704
17 C 0.559 3.441
18 O -0.581 6.581
19 C -0.140 4.140
20 C -0.060 4.060
21 C -0.108 4.108
22 C 0.098 3.902
23 C 0.075 3.925
24 C -0.069 4.069
25 N -0.657 5.657
26 C 0.489 3.511
27 O -0.548 6.548
28 C 0.051 3.949
29 O -0.301 6.301
30 H 0.077 0.923
31 H 0.075 0.925
32 H 0.043 0.957
33 H 0.092 0.908
34 H 0.090 0.910
35 H 0.043 0.957
36 H 0.061 0.939
37 H 0.029 0.971
38 H 0.018 0.982
39 H 0.372 0.628
40 H 0.251 0.749
41 H 0.413 0.587
42 H 0.166 0.834
43 H 0.174 0.826
44 H 0.140 0.860
45 H 0.421 0.579
46 H 0.172 0.828
47 H 0.124 0.876
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.157 -5.138 18.444 25.053
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.213 4.213
2 C 0.039 3.961
3 H 0.083 0.917
4 C -0.148 4.148
5 C -0.152 4.152
6 C 0.023 3.977
7 N -0.393 5.393
8 C -0.378 4.378
9 H 0.095 0.905
10 C -0.271 4.271
11 N -0.622 5.622
12 Si 0.803 3.197
13 H -0.205 1.205
14 H -0.223 1.223
15 H -0.200 1.200
16 N -0.356 5.356
17 C 0.348 3.652
18 O -0.462 6.462
19 C -0.144 4.144
20 C -0.080 4.080
21 C -0.127 4.127
22 C 0.051 3.949
23 C -0.020 4.020
24 C -0.090 4.090
25 N -0.304 5.304
26 C 0.277 3.723
27 O -0.425 6.425
28 C -0.026 4.026
29 O -0.215 6.215
30 H 0.096 0.904
31 H 0.094 0.906
32 H 0.062 0.938
33 H 0.111 0.889
34 H 0.108 0.892
35 H 0.062 0.938
36 H 0.080 0.920
37 H 0.047 0.953
38 H 0.036 0.964
39 H 0.203 0.797
40 H 0.060 0.940
41 H 0.252 0.748
42 H 0.184 0.816
43 H 0.191 0.809
44 H 0.158 0.842
45 H 0.261 0.739
46 H 0.189 0.811
47 H 0.142 0.858
Dipole moment (debyes) X Y Z Total
from point charges -16.234 -4.465 18.965 25.361
hybrid contribution 0.961 0.656 -0.298 1.201
sum -15.273 -3.809 18.667 24.418
Atomic orbital electron populations
1.22102 0.93710 1.03196 1.02309 1.21002 0.94821 0.96602 0.83656
0.91704 1.21761 0.93524 1.02448 0.97041 1.21604 0.96496 0.99654
0.97418 1.20873 0.83055 0.97551 0.96212 1.42652 1.02618 1.65873
1.28156 1.19638 0.89977 1.26353 1.01825 0.90492 1.25605 0.97574
1.02501 1.01386 1.69815 1.07065 1.48875 1.36470 0.85200 0.77029
0.78495 0.78982 1.20483 1.22291 1.20044 1.45945 1.66104 1.14713
1.08882 1.18342 0.77029 0.86016 0.83855 1.90763 1.52448 1.17252
1.85725 1.19687 1.06244 0.95255 0.93171 1.21459 0.94760 0.92080
0.99661 1.20777 1.01429 1.02545 0.87913 1.19096 0.98490 0.88867
0.88425 1.17884 1.05607 0.91762 0.86727 1.20654 0.98153 1.00485
0.89711 1.43777 1.50527 1.23944 1.12150 1.22066 0.78543 0.88627
0.83040 1.90816 1.61347 1.65373 1.24996 1.23495 0.94922 0.87608
0.96618 1.86223 1.67675 1.37600 1.30000 0.90373 0.90617 0.93813
0.88943 0.89170 0.93777 0.92023 0.95341 0.96446 0.79704 0.94046
0.74845 0.81630 0.80880 0.84210 0.73886 0.81062 0.85840
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.49 9.48 71.98 0.68 -1.81 16
2 C 0.14 2.80 2.57 44.99 0.12 2.92 16
3 H 0.06 1.64 7.58 -2.39 -0.02 1.62 16
4 C -0.11 -2.08 4.75 30.59 0.15 -1.94 16
5 C -0.11 -3.24 5.22 30.59 0.16 -3.08 16
6 C 0.15 5.54 6.26 86.38 0.54 6.08 16
7 N -0.75 -37.74 5.60 -343.45 -1.92 -39.66 16
8 C -0.25 -13.63 9.99 84.03 0.84 -12.79 16
9 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16
10 C -0.08 -4.50 5.50 84.86 0.47 -4.03 16
11 N -0.97 -59.48 13.06 21.65 0.28 -59.20 16
12 Si 0.97 45.58 29.55 68.60 2.03 47.61 16
13 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16
14 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16
15 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16
16 N -0.70 -12.82 4.48 -445.64 -2.00 -14.82 16
17 C 0.56 12.87 7.73 86.72 0.67 13.54 16
18 O -0.58 -17.96 16.00 -3.99 -0.06 -18.03 16
19 C -0.14 -2.57 5.88 -20.07 -0.12 -2.69 16
20 C -0.06 -0.76 9.53 22.53 0.21 -0.55 16
21 C -0.11 -1.28 9.98 22.29 0.22 -1.06 16
22 C 0.10 1.48 6.45 22.73 0.15 1.63 16
23 C 0.08 1.26 6.54 38.10 0.25 1.51 16
24 C -0.07 -1.28 9.49 22.60 0.21 -1.06 16
25 N -0.66 -10.70 5.48 -302.74 -1.66 -12.36 16
26 C 0.49 8.52 7.94 87.62 0.70 9.21 16
27 O -0.55 -13.24 17.95 -3.10 -0.06 -13.30 16
28 C 0.05 0.55 7.16 71.25 0.51 1.06 16
29 O -0.30 -4.13 10.44 -91.81 -0.96 -5.09 16
30 H 0.08 1.09 8.14 -2.39 -0.02 1.08 16
31 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16
32 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16
33 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16
34 H 0.09 1.60 8.14 -2.39 -0.02 1.59 16
35 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16
36 H 0.06 1.75 7.75 -2.39 -0.02 1.73 16
37 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16
38 H 0.02 0.66 8.14 -2.38 -0.02 0.64 16
39 H 0.37 20.08 7.67 -92.71 -0.71 19.37 16
40 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16
41 H 0.41 5.22 6.62 -92.70 -0.61 4.60 16
42 H 0.17 1.18 6.38 -2.91 -0.02 1.16 16
43 H 0.17 1.21 8.06 -2.91 -0.02 1.18 16
44 H 0.14 2.72 7.65 -2.91 -0.02 2.69 16
45 H 0.42 6.00 8.89 -92.71 -0.82 5.18 16
46 H 0.17 1.03 8.14 -2.39 -0.02 1.01 16
47 H 0.12 0.90 8.14 -2.38 -0.02 0.88 16
Total: -1.00 -78.50 396.50 0.29 -78.20
By element:
Atomic # 1 Polarization: 30.82 SS G_CDS: -1.12 Total: 29.70 kcal
Atomic # 6 Polarization: 1.18 SS G_CDS: 5.76 Total: 6.93 kcal
Atomic # 7 Polarization: -120.75 SS G_CDS: -5.30 Total: -126.04 kcal
Atomic # 8 Polarization: -35.33 SS G_CDS: -1.08 Total: -36.41 kcal
Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal
Total: -78.50 0.29 -78.20 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001675915867.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -23.563 kcal
(2) G-P(sol) polarization free energy of solvation -78.497 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.060 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.294 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.203 kcal
(6) G-S(sol) free energy of system = (1) + (5) -101.765 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.91 seconds