Wall clock time and date at job start Wed Apr 1 2020 04:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.47444 * 2 1 4 4 C 1.53005 * 109.46942 * 240.00062 * 2 1 3 5 5 N 1.46507 * 109.47119 * 185.00021 * 4 2 1 6 6 C 1.34769 * 119.99974 * 180.02562 * 5 4 2 7 7 O 1.21584 * 120.00078 * 359.97438 * 6 5 4 8 8 C 1.47601 * 119.99819 * 179.97438 * 6 5 4 9 9 C 1.39760 * 120.26818 * 0.02562 * 8 6 5 10 10 C 1.37471 * 120.20229 * 180.21981 * 9 8 6 11 11 C 1.39594 * 120.43062 * 0.02562 * 10 9 8 12 12 C 1.39276 * 119.08881 * 359.59735 * 11 10 9 13 13 C 1.37228 * 120.92602 * 0.61086 * 12 11 10 14 14 C 1.51677 * 106.93983 * 180.59116 * 12 11 10 15 15 C 1.54704 * 101.91226 * 15.73608 * 14 12 11 16 16 O 1.35991 * 129.70845 * 179.57750 * 11 10 9 17 17 N 1.46905 * 109.47290 * 120.00324 * 2 1 3 18 18 C 1.46897 * 110.99664 * 274.99966 * 17 2 1 19 19 C 1.50705 * 109.46992 * 179.97438 * 18 17 2 20 20 O 1.21291 * 119.99738 * 0.02562 * 19 18 17 21 21 N 1.34774 * 119.99988 * 179.97438 * 19 18 17 22 22 C 1.37091 * 119.99989 * 180.02562 * 21 19 18 23 23 H 1.07997 * 120.00390 * 359.97438 * 22 21 19 24 24 C 1.38950 * 120.00109 * 180.02562 * 22 21 19 25 25 N 1.31410 * 120.00173 * 359.97438 * 24 22 21 26 26 Si 1.86806 * 119.99991 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.47092 * 359.97438 * 26 24 22 28 28 H 1.48496 * 109.47160 * 120.00176 * 26 24 22 29 29 H 1.48503 * 109.46656 * 239.99701 * 26 24 22 30 30 H 1.08997 * 109.46984 * 59.99779 * 1 2 3 31 31 H 1.09000 * 109.46916 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47156 * 299.99825 * 1 2 3 33 33 H 1.09000 * 109.46874 * 65.00375 * 4 2 1 34 34 H 1.09001 * 109.47133 * 304.99505 * 4 2 1 35 35 H 0.97006 * 119.99607 * 0.02562 * 5 4 2 36 36 H 1.08000 * 119.89800 * 0.19342 * 9 8 6 37 37 H 1.07997 * 119.78035 * 179.97438 * 10 9 8 38 38 H 1.07998 * 120.04924 * 179.56938 * 13 12 11 39 39 H 1.09002 * 110.94940 * 257.56903 * 14 12 11 40 40 H 1.09001 * 110.94488 * 133.89904 * 14 12 11 41 41 H 1.08995 * 110.74237 * 92.89801 * 15 14 12 42 42 H 1.09005 * 110.74064 * 216.04562 * 15 14 12 43 43 H 1.00902 * 110.99884 * 38.95085 * 17 2 1 44 44 H 1.09001 * 109.47541 * 299.99670 * 18 17 2 45 45 H 1.08998 * 109.47143 * 60.00138 * 18 17 2 46 46 H 0.97004 * 120.00204 * 359.97438 * 21 19 18 47 47 H 0.96995 * 120.00476 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 3.5001 -0.8264 -1.1907 6 6 4.1730 -1.4283 -2.1912 7 8 3.5684 -1.8844 -3.1424 8 6 5.6441 -1.5337 -2.1324 9 6 6.3447 -1.0118 -1.0415 10 6 7.7152 -1.1068 -0.9902 11 6 8.4204 -1.7235 -2.0251 12 6 7.7158 -2.2486 -3.1056 13 6 6.3481 -2.1552 -3.1682 14 6 8.7382 -2.8577 -4.0460 15 6 9.9898 -2.9489 -3.1412 16 8 9.7590 -1.9129 -2.1720 17 7 2.0197 -0.6926 1.1994 18 6 2.0825 0.2225 2.3468 19 6 2.5874 -0.5220 3.5560 20 8 2.8678 -1.6989 3.4701 21 7 2.7283 0.1203 4.7325 22 6 3.1881 -0.5568 5.8323 23 1 3.4371 -1.6049 5.7561 24 6 3.3329 0.1052 7.0453 25 7 3.0296 1.3805 7.1383 26 14 3.9588 -0.8176 8.5441 27 1 4.2264 -2.2318 8.1786 28 1 5.2124 -0.1849 9.0271 29 1 2.9344 -0.7697 9.6182 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.7516 -0.1582 -2.1370 34 1 1.6054 -1.7198 -1.2952 35 1 3.9824 -0.4628 -0.4316 36 1 5.8078 -0.5321 -0.2365 37 1 8.2497 -0.7008 -0.1442 38 1 5.8166 -2.5613 -4.0162 39 1 8.9209 -2.2043 -4.8992 40 1 8.4230 -3.8475 -4.3761 41 1 10.0464 -3.9242 -2.6579 42 1 10.8956 -2.7505 -3.7142 43 1 1.4496 -1.4980 1.4100 44 1 2.7589 1.0461 2.1183 45 1 1.0871 0.6162 2.5525 46 1 2.5051 1.0618 4.8009 47 1 3.1303 1.8425 7.9851 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690625591.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:18 Heat of formation + Delta-G solvation = -78.042813 kcal Electronic energy + Delta-G solvation = -29390.455023 eV Core-core repulsion = 25152.390958 eV Total energy + Delta-G solvation = -4238.064065 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.40777 -39.79530 -38.48617 -37.35339 -36.76281 -34.21110 -33.80512 -32.98236 -31.37272 -30.98578 -30.30767 -29.49389 -26.65396 -26.23236 -24.11683 -23.71814 -23.18748 -22.07933 -21.04017 -20.24394 -19.34178 -17.98914 -17.79187 -17.64246 -16.90482 -16.49121 -16.03823 -15.84321 -15.61526 -15.13405 -14.70713 -14.54336 -14.46330 -14.29758 -13.91462 -13.76877 -13.52667 -13.36372 -13.27349 -13.05934 -12.93061 -12.70949 -12.55041 -12.44626 -12.21494 -12.09705 -11.72800 -11.61231 -11.44136 -11.15534 -11.09115 -11.02987 -10.99206 -10.36906 -10.25746 -9.95966 -9.55529 -9.19087 -9.01441 -8.54065 -8.39065 -8.15246 -7.99988 -6.45408 -3.86232 0.67739 1.09129 2.71308 2.95908 3.13909 3.20179 3.25051 3.32131 3.68542 3.86118 4.02390 4.07048 4.24108 4.27945 4.54922 4.63020 4.71866 4.75925 4.92055 4.97568 5.00416 5.05628 5.09607 5.18234 5.24159 5.30798 5.36615 5.41274 5.47552 5.59196 5.67265 5.70688 5.77047 5.85717 5.93877 5.98482 6.02452 6.06940 6.12473 6.21911 6.23980 6.49343 6.84468 7.10346 7.52174 7.55223 7.61460 8.02682 8.26896 8.57042 9.14511 9.50315 10.01371 10.72284 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008937 B = 0.002453 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3132.216972 B =11412.226032 C =14096.646540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.067 3.933 3 H 0.084 0.916 4 C 0.135 3.865 5 N -0.707 5.707 6 C 0.562 3.438 7 O -0.552 6.552 8 C -0.163 4.163 9 C -0.042 4.042 10 C -0.143 4.143 11 C 0.130 3.870 12 C -0.190 4.190 13 C -0.010 4.010 14 C -0.108 4.108 15 C 0.050 3.950 16 O -0.302 6.302 17 N -0.664 5.664 18 C 0.049 3.951 19 C 0.439 3.561 20 O -0.582 6.582 21 N -0.563 5.563 22 C -0.299 4.299 23 H 0.103 0.897 24 C 0.022 3.978 25 N -0.901 5.901 26 Si 0.929 3.071 27 H -0.268 1.268 28 H -0.281 1.281 29 H -0.282 1.282 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.409 0.591 36 H 0.141 0.859 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.091 0.909 40 H 0.094 0.906 41 H 0.080 0.920 42 H 0.108 0.892 43 H 0.354 0.646 44 H 0.085 0.915 45 H 0.045 0.955 46 H 0.392 0.608 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.280 -1.287 -20.942 21.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.044 4.044 3 H 0.103 0.897 4 C 0.010 3.990 5 N -0.358 5.358 6 C 0.350 3.650 7 O -0.432 6.432 8 C -0.166 4.166 9 C -0.061 4.061 10 C -0.162 4.162 11 C 0.084 3.916 12 C -0.191 4.191 13 C -0.029 4.029 14 C -0.145 4.145 15 C -0.024 4.024 16 O -0.215 6.215 17 N -0.297 5.297 18 C -0.083 4.083 19 C 0.224 3.776 20 O -0.466 6.466 21 N -0.200 5.200 22 C -0.428 4.428 23 H 0.121 0.879 24 C -0.179 4.179 25 N -0.543 5.543 26 Si 0.756 3.244 27 H -0.192 1.192 28 H -0.207 1.207 29 H -0.208 1.208 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.246 0.754 36 H 0.158 0.842 37 H 0.155 0.845 38 H 0.155 0.845 39 H 0.110 0.890 40 H 0.112 0.888 41 H 0.098 0.902 42 H 0.126 0.874 43 H 0.174 0.826 44 H 0.104 0.896 45 H 0.063 0.937 46 H 0.225 0.775 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.891 -2.095 -21.532 22.704 hybrid contribution -0.613 0.440 1.457 1.641 sum 6.277 -1.654 -20.075 21.099 Atomic orbital electron populations 1.22429 0.96181 1.02762 1.02634 1.21867 0.93452 0.98331 0.90731 0.89738 1.21347 0.79899 1.01043 0.96699 1.45703 1.07821 1.59063 1.23216 1.18027 0.86723 0.77857 0.82403 1.90747 1.69903 1.48753 1.33800 1.19768 0.93250 1.06081 0.97488 1.21137 0.93118 0.95324 0.96518 1.20228 0.93271 1.04737 0.97966 1.19890 0.83092 0.94851 0.93772 1.20668 0.94509 1.06790 0.97097 1.20272 0.91332 0.93907 0.97398 1.21788 0.92404 1.02431 0.97895 1.23876 0.99004 0.90869 0.88694 1.86799 1.20010 1.54141 1.60567 1.60188 1.57750 1.09222 1.02554 1.21726 1.00096 0.95621 0.90906 1.19805 0.85302 0.88262 0.84197 1.90540 1.55265 1.16219 1.84594 1.41874 1.57717 1.12433 1.07972 1.19742 1.39895 0.96445 0.86733 0.87874 1.25262 0.97631 0.95771 0.99268 1.69612 1.48682 1.08863 1.27119 0.85812 0.78266 0.79670 0.80688 1.19195 1.20712 1.20774 0.91826 0.91946 0.91909 0.91252 0.91398 0.75401 0.84181 0.84498 0.84509 0.89028 0.88801 0.90229 0.87420 0.82581 0.89632 0.93676 0.77489 0.91901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.69 9.16 37.16 0.34 -1.35 16 2 C 0.07 0.72 2.75 -67.71 -0.19 0.53 16 3 H 0.08 0.84 7.80 -51.93 -0.40 0.43 16 4 C 0.13 1.54 5.37 -4.04 -0.02 1.52 16 5 N -0.71 -8.77 5.34 -61.32 -0.33 -9.10 16 6 C 0.56 7.90 7.77 -12.44 -0.10 7.80 16 7 O -0.55 -9.26 16.36 5.29 0.09 -9.17 16 8 C -0.16 -2.05 5.88 -104.92 -0.62 -2.67 16 9 C -0.04 -0.48 9.52 -39.29 -0.37 -0.86 16 10 C -0.14 -1.62 10.05 -39.36 -0.40 -2.02 16 11 C 0.13 1.49 7.05 -38.69 -0.27 1.22 16 12 C -0.19 -2.00 6.26 -104.12 -0.65 -2.66 16 13 C -0.01 -0.12 9.58 -39.36 -0.38 -0.50 16 14 C -0.11 -0.76 7.12 -26.50 -0.19 -0.95 16 15 C 0.05 0.34 8.00 38.05 0.30 0.65 16 16 O -0.30 -3.24 11.09 -19.71 -0.22 -3.46 16 17 N -0.66 -9.40 5.31 -107.99 -0.57 -9.97 16 18 C 0.05 0.78 5.97 -4.98 -0.03 0.75 16 19 C 0.44 9.77 7.82 -10.98 -0.09 9.69 16 20 O -0.58 -15.13 15.78 5.55 0.09 -15.05 16 21 N -0.56 -13.72 5.29 -10.96 -0.06 -13.78 16 22 C -0.30 -8.13 9.68 -14.94 -0.14 -8.27 16 23 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 24 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 25 N -0.90 -24.05 13.05 55.50 0.72 -23.32 16 26 Si 0.93 20.73 29.55 -169.99 -5.02 15.71 16 27 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 28 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 29 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 32 H 0.06 0.61 7.45 -51.93 -0.39 0.22 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.41 4.83 6.17 -40.82 -0.25 4.58 16 36 H 0.14 1.43 6.40 -52.49 -0.34 1.09 16 37 H 0.14 1.37 8.06 -52.49 -0.42 0.94 16 38 H 0.14 1.54 7.66 -52.49 -0.40 1.14 16 39 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.35 5.46 8.17 -39.29 -0.32 5.13 16 44 H 0.09 1.21 8.06 -51.93 -0.42 0.79 16 45 H 0.05 0.65 7.44 -51.93 -0.39 0.26 16 46 H 0.39 9.12 7.90 -40.82 -0.32 8.80 16 47 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 LS Contribution 396.25 15.07 5.97 5.97 Total: -1.00 -33.41 396.25 -8.77 -42.18 By element: Atomic # 1 Polarization: 23.15 SS G_CDS: -6.54 Total: 16.61 kcal Atomic # 6 Polarization: 6.26 SS G_CDS: -2.89 Total: 3.37 kcal Atomic # 7 Polarization: -55.93 SS G_CDS: -0.24 Total: -56.16 kcal Atomic # 8 Polarization: -27.63 SS G_CDS: -0.04 Total: -27.68 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.41 -8.77 -42.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690625591.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.866 kcal (2) G-P(sol) polarization free energy of solvation -33.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds