Wall clock time and date at job start Wed Apr 1 2020 04:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.47444 * 2 1 4 4 C 1.53005 * 109.46942 * 240.00062 * 2 1 3 5 5 N 1.46507 * 109.47119 * 185.00021 * 4 2 1 6 6 C 1.34769 * 119.99974 * 180.02562 * 5 4 2 7 7 O 1.21584 * 120.00078 * 359.97438 * 6 5 4 8 8 C 1.47601 * 119.99819 * 179.97438 * 6 5 4 9 9 C 1.39760 * 120.26818 * 0.02562 * 8 6 5 10 10 C 1.37471 * 120.20229 * 180.21981 * 9 8 6 11 11 C 1.39594 * 120.43062 * 0.02562 * 10 9 8 12 12 C 1.39276 * 119.08881 * 359.59735 * 11 10 9 13 13 C 1.37228 * 120.92602 * 0.61086 * 12 11 10 14 14 C 1.51677 * 106.93983 * 180.59116 * 12 11 10 15 15 C 1.54704 * 101.91226 * 15.73608 * 14 12 11 16 16 O 1.35991 * 129.70845 * 179.57750 * 11 10 9 17 17 N 1.46905 * 109.47290 * 120.00324 * 2 1 3 18 18 C 1.46897 * 110.99664 * 274.99966 * 17 2 1 19 19 C 1.50705 * 109.46992 * 179.97438 * 18 17 2 20 20 O 1.21291 * 119.99738 * 0.02562 * 19 18 17 21 21 N 1.34774 * 119.99988 * 179.97438 * 19 18 17 22 22 C 1.37091 * 119.99989 * 180.02562 * 21 19 18 23 23 H 1.07997 * 120.00390 * 359.97438 * 22 21 19 24 24 C 1.38950 * 120.00109 * 180.02562 * 22 21 19 25 25 N 1.31410 * 120.00173 * 359.97438 * 24 22 21 26 26 Si 1.86806 * 119.99991 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.47092 * 359.97438 * 26 24 22 28 28 H 1.48496 * 109.47160 * 120.00176 * 26 24 22 29 29 H 1.48503 * 109.46656 * 239.99701 * 26 24 22 30 30 H 1.08997 * 109.46984 * 59.99779 * 1 2 3 31 31 H 1.09000 * 109.46916 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47156 * 299.99825 * 1 2 3 33 33 H 1.09000 * 109.46874 * 65.00375 * 4 2 1 34 34 H 1.09001 * 109.47133 * 304.99505 * 4 2 1 35 35 H 0.97006 * 119.99607 * 0.02562 * 5 4 2 36 36 H 1.08000 * 119.89800 * 0.19342 * 9 8 6 37 37 H 1.07997 * 119.78035 * 179.97438 * 10 9 8 38 38 H 1.07998 * 120.04924 * 179.56938 * 13 12 11 39 39 H 1.09002 * 110.94940 * 257.56903 * 14 12 11 40 40 H 1.09001 * 110.94488 * 133.89904 * 14 12 11 41 41 H 1.08995 * 110.74237 * 92.89801 * 15 14 12 42 42 H 1.09005 * 110.74064 * 216.04562 * 15 14 12 43 43 H 1.00902 * 110.99884 * 38.95085 * 17 2 1 44 44 H 1.09001 * 109.47541 * 299.99670 * 18 17 2 45 45 H 1.08998 * 109.47143 * 60.00138 * 18 17 2 46 46 H 0.97004 * 120.00204 * 359.97438 * 21 19 18 47 47 H 0.96995 * 120.00476 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 3.5001 -0.8264 -1.1907 6 6 4.1730 -1.4283 -2.1912 7 8 3.5684 -1.8844 -3.1424 8 6 5.6441 -1.5337 -2.1324 9 6 6.3447 -1.0118 -1.0415 10 6 7.7152 -1.1068 -0.9902 11 6 8.4204 -1.7235 -2.0251 12 6 7.7158 -2.2486 -3.1056 13 6 6.3481 -2.1552 -3.1682 14 6 8.7382 -2.8577 -4.0460 15 6 9.9898 -2.9489 -3.1412 16 8 9.7590 -1.9129 -2.1720 17 7 2.0197 -0.6926 1.1994 18 6 2.0825 0.2225 2.3468 19 6 2.5874 -0.5220 3.5560 20 8 2.8678 -1.6989 3.4701 21 7 2.7283 0.1203 4.7325 22 6 3.1881 -0.5568 5.8323 23 1 3.4371 -1.6049 5.7561 24 6 3.3329 0.1052 7.0453 25 7 3.0296 1.3805 7.1383 26 14 3.9588 -0.8176 8.5441 27 1 4.2264 -2.2318 8.1786 28 1 5.2124 -0.1849 9.0271 29 1 2.9344 -0.7697 9.6182 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.7516 -0.1582 -2.1370 34 1 1.6054 -1.7198 -1.2952 35 1 3.9824 -0.4628 -0.4316 36 1 5.8078 -0.5321 -0.2365 37 1 8.2497 -0.7008 -0.1442 38 1 5.8166 -2.5613 -4.0162 39 1 8.9209 -2.2043 -4.8992 40 1 8.4230 -3.8475 -4.3761 41 1 10.0464 -3.9242 -2.6579 42 1 10.8956 -2.7505 -3.7142 43 1 1.4496 -1.4980 1.4100 44 1 2.7589 1.0461 2.1183 45 1 1.0871 0.6162 2.5525 46 1 2.5051 1.0618 4.8009 47 1 3.1303 1.8425 7.9851 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690625591.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:17 Heat of formation + Delta-G solvation = -102.794669 kcal Electronic energy + Delta-G solvation = -29391.528344 eV Core-core repulsion = 25152.390958 eV Total energy + Delta-G solvation = -4239.137386 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.18862 -40.82490 -40.14180 -38.36999 -37.84583 -35.95791 -35.10669 -33.73354 -33.25362 -32.12746 -31.23785 -30.22815 -27.94637 -27.41009 -25.68700 -24.58060 -24.02142 -22.85680 -21.99292 -21.21664 -21.07683 -19.90080 -18.78255 -18.43734 -17.91992 -17.51119 -17.15434 -16.89375 -16.70197 -16.55249 -16.28872 -15.87101 -15.60846 -15.43941 -15.16441 -14.87374 -14.62973 -14.40705 -14.17456 -13.99340 -13.81990 -13.66930 -13.57356 -13.48383 -13.40494 -13.27989 -13.05953 -12.76895 -12.66681 -12.51931 -12.37684 -12.11343 -11.92275 -11.85482 -11.79473 -11.49275 -11.07555 -10.31457 -10.07980 -10.02256 -9.98679 -9.33428 -9.23149 -8.45305 -5.93129 -0.24021 0.23158 1.37076 1.42835 1.56255 1.75388 2.09109 2.16498 2.27550 2.30371 2.75298 2.91890 3.22812 3.39724 3.54228 3.60918 3.74289 3.84363 3.87341 4.10848 4.12881 4.15789 4.17831 4.34271 4.37145 4.45955 4.51656 4.62264 4.63655 4.67485 4.77113 4.79951 4.85972 4.90714 4.97677 5.01543 5.09163 5.21059 5.24155 5.27444 5.39950 5.43251 5.50609 5.90901 6.05275 6.11834 6.37521 6.58351 6.62765 7.15616 7.21776 7.60065 8.15568 8.72191 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008937 B = 0.002453 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3132.216972 B =11412.226032 C =14096.646540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.076 3.924 3 H 0.102 0.898 4 C 0.135 3.865 5 N -0.701 5.701 6 C 0.559 3.441 7 O -0.586 6.586 8 C -0.180 4.180 9 C -0.043 4.043 10 C -0.155 4.155 11 C 0.121 3.879 12 C -0.192 4.192 13 C -0.019 4.019 14 C -0.105 4.105 15 C 0.044 3.956 16 O -0.318 6.318 17 N -0.675 5.675 18 C 0.066 3.934 19 C 0.438 3.562 20 O -0.623 6.623 21 N -0.574 5.574 22 C -0.329 4.329 23 H 0.077 0.923 24 C -0.012 4.012 25 N -0.920 5.920 26 Si 0.989 3.011 27 H -0.274 1.274 28 H -0.271 1.271 29 H -0.272 1.272 30 H 0.082 0.918 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.081 0.919 34 H 0.054 0.946 35 H 0.412 0.588 36 H 0.149 0.851 37 H 0.146 0.854 38 H 0.137 0.863 39 H 0.106 0.894 40 H 0.111 0.889 41 H 0.089 0.911 42 H 0.137 0.863 43 H 0.345 0.655 44 H 0.110 0.890 45 H 0.068 0.932 46 H 0.397 0.603 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.850 -0.598 -21.588 22.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.034 4.034 3 H 0.120 0.880 4 C 0.010 3.990 5 N -0.352 5.352 6 C 0.348 3.652 7 O -0.469 6.469 8 C -0.183 4.183 9 C -0.062 4.062 10 C -0.173 4.173 11 C 0.075 3.925 12 C -0.193 4.193 13 C -0.038 4.038 14 C -0.142 4.142 15 C -0.029 4.029 16 O -0.232 6.232 17 N -0.307 5.307 18 C -0.067 4.067 19 C 0.226 3.774 20 O -0.509 6.509 21 N -0.212 5.212 22 C -0.459 4.459 23 H 0.095 0.905 24 C -0.212 4.212 25 N -0.561 5.561 26 Si 0.813 3.187 27 H -0.199 1.199 28 H -0.197 1.197 29 H -0.198 1.198 30 H 0.101 0.899 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.099 0.901 34 H 0.073 0.927 35 H 0.250 0.750 36 H 0.166 0.834 37 H 0.164 0.836 38 H 0.155 0.845 39 H 0.124 0.876 40 H 0.129 0.871 41 H 0.107 0.893 42 H 0.155 0.845 43 H 0.164 0.836 44 H 0.128 0.872 45 H 0.086 0.914 46 H 0.230 0.770 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.454 -1.368 -22.178 23.437 hybrid contribution -0.747 0.190 1.578 1.756 sum 6.706 -1.178 -20.600 21.696 Atomic orbital electron populations 1.22379 0.94758 1.02843 1.03561 1.21878 0.94478 0.98497 0.88536 0.88011 1.21421 0.79242 1.00679 0.97618 1.45729 1.08305 1.58311 1.22805 1.18278 0.87347 0.77426 0.82150 1.90717 1.70647 1.50406 1.35094 1.19784 0.92609 1.07397 0.98494 1.21202 0.93306 0.95287 0.96412 1.20420 0.93358 1.04971 0.98565 1.20104 0.83727 0.94704 0.93996 1.21017 0.94416 1.06101 0.97740 1.20361 0.92007 0.94161 0.97317 1.21918 0.91213 1.03410 0.97647 1.24216 1.00034 0.90461 0.88226 1.86780 1.19411 1.55302 1.61663 1.60160 1.58506 1.09118 1.02942 1.21585 1.01386 0.95283 0.88412 1.20940 0.83283 0.87997 0.85181 1.90514 1.56535 1.18394 1.85464 1.41936 1.58422 1.12600 1.08212 1.19651 1.41864 0.95832 0.88557 0.90491 1.25974 0.97376 0.96586 1.01282 1.69664 1.48845 1.09605 1.28010 0.84930 0.78176 0.78086 0.77530 1.19904 1.19667 1.19754 0.89914 0.92374 0.91893 0.90053 0.92716 0.75018 0.83387 0.83578 0.84538 0.87570 0.87082 0.89319 0.84547 0.83554 0.87183 0.91434 0.76955 0.91382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.89 9.16 71.98 0.66 -2.23 16 2 C 0.08 1.47 2.75 44.92 0.12 1.59 16 3 H 0.10 1.68 7.80 -2.39 -0.02 1.66 16 4 C 0.13 2.94 5.37 86.38 0.46 3.40 16 5 N -0.70 -17.12 5.34 -466.19 -2.49 -19.61 16 6 C 0.56 15.90 7.77 86.72 0.67 16.58 16 7 O -0.59 -20.01 16.36 -3.98 -0.07 -20.08 16 8 C -0.18 -4.59 5.88 -20.06 -0.12 -4.71 16 9 C -0.04 -1.00 9.52 22.46 0.21 -0.79 16 10 C -0.15 -3.48 10.05 22.42 0.23 -3.26 16 11 C 0.12 2.70 7.05 22.85 0.16 2.86 16 12 C -0.19 -3.91 6.26 -19.54 -0.12 -4.04 16 13 C -0.02 -0.46 9.58 22.41 0.21 -0.24 16 14 C -0.11 -1.28 7.12 30.74 0.22 -1.06 16 15 C 0.04 0.51 8.00 72.56 0.58 1.09 16 16 O -0.32 -6.44 11.09 -93.45 -1.04 -7.47 16 17 N -0.67 -18.28 5.31 -495.57 -2.63 -20.91 16 18 C 0.07 1.95 5.97 85.56 0.51 2.47 16 19 C 0.44 19.53 7.82 87.66 0.69 20.21 16 20 O -0.62 -33.02 15.78 -3.06 -0.05 -33.06 16 21 N -0.57 -28.17 5.29 -306.99 -1.62 -29.79 16 22 C -0.33 -18.26 9.68 84.04 0.81 -17.44 16 23 H 0.08 4.60 7.16 -2.91 -0.02 4.58 16 24 C -0.01 -0.65 5.50 84.93 0.47 -0.19 16 25 N -0.92 -48.63 13.05 21.66 0.28 -48.35 16 26 Si 0.99 42.40 29.55 68.60 2.03 44.43 16 27 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 28 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 29 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 30 H 0.08 1.06 8.14 -2.39 -0.02 1.05 16 31 H 0.06 1.01 8.13 -2.39 -0.02 0.99 16 32 H 0.06 1.06 7.45 -2.39 -0.02 1.04 16 33 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.41 9.48 6.17 -92.70 -0.57 8.91 16 36 H 0.15 3.02 6.40 -2.91 -0.02 3.00 16 37 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 38 H 0.14 3.14 7.66 -2.91 -0.02 3.11 16 39 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.14 0.75 8.14 -2.38 -0.02 0.73 16 43 H 0.35 10.49 8.17 -89.69 -0.73 9.76 16 44 H 0.11 2.81 8.06 -2.39 -0.02 2.79 16 45 H 0.07 1.77 7.44 -2.39 -0.02 1.75 16 46 H 0.40 18.40 7.90 -92.71 -0.73 17.67 16 47 H 0.28 13.70 8.31 -92.71 -0.77 12.93 16 Total: -1.00 -73.43 396.25 -0.82 -74.24 By element: Atomic # 1 Polarization: 47.34 SS G_CDS: -1.00 Total: 46.34 kcal Atomic # 6 Polarization: 8.50 SS G_CDS: 5.77 Total: 14.27 kcal Atomic # 7 Polarization: -112.20 SS G_CDS: -6.46 Total: -118.67 kcal Atomic # 8 Polarization: -59.47 SS G_CDS: -1.15 Total: -60.62 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Total: -73.43 -0.82 -74.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690625591.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.552 kcal (2) G-P(sol) polarization free energy of solvation -73.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds