Wall clock time and date at job start Wed Apr 1 2020 04:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09011 * 109.46837 * 2 1 4 4 C 1.52995 * 109.47299 * 120.00198 * 2 1 3 5 5 N 1.46497 * 109.47258 * 175.00245 * 4 2 1 6 6 C 1.34774 * 120.00319 * 180.02562 * 5 4 2 7 7 O 1.21589 * 120.00182 * 359.97438 * 6 5 4 8 8 C 1.47614 * 120.00263 * 179.97438 * 6 5 4 9 9 C 1.39745 * 120.26215 * 0.02562 * 8 6 5 10 10 C 1.37475 * 120.19832 * 180.22271 * 9 8 6 11 11 C 1.39585 * 120.42570 * 0.29767 * 10 9 8 12 12 C 1.39186 * 119.10615 * 359.07521 * 11 10 9 13 13 C 1.37301 * 120.93020 * 1.06842 * 12 11 10 14 14 C 1.51681 * 107.00304 * 181.08109 * 12 11 10 15 15 C 1.54700 * 101.90890 * 15.50697 * 14 12 11 16 16 O 1.35999 * 129.72493 * 179.31953 * 11 10 9 17 17 N 1.46899 * 109.47081 * 240.00319 * 2 1 3 18 18 C 1.46899 * 111.00203 * 84.99923 * 17 2 1 19 19 C 1.50693 * 109.47539 * 180.02562 * 18 17 2 20 20 O 1.21295 * 119.99624 * 359.97438 * 19 18 17 21 21 N 1.34779 * 120.00479 * 179.97438 * 19 18 17 22 22 C 1.37097 * 120.00171 * 179.97438 * 21 19 18 23 23 H 1.08000 * 119.99981 * 0.02562 * 22 21 19 24 24 C 1.38949 * 119.99830 * 180.02562 * 22 21 19 25 25 N 1.31410 * 120.00357 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99723 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.47304 * 60.00336 * 26 24 22 28 28 H 1.48502 * 109.47107 * 180.02562 * 26 24 22 29 29 H 1.48494 * 109.47120 * 300.00079 * 26 24 22 30 30 H 1.09002 * 109.46945 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47299 * 299.99728 * 1 2 3 32 32 H 1.08997 * 109.47294 * 59.99706 * 1 2 3 33 33 H 1.08993 * 109.47281 * 54.99893 * 4 2 1 34 34 H 1.09002 * 109.47224 * 295.00016 * 4 2 1 35 35 H 0.97007 * 120.00034 * 359.97438 * 5 4 2 36 36 H 1.08002 * 119.90344 * 0.20512 * 9 8 6 37 37 H 1.08002 * 119.78342 * 180.02562 * 10 9 8 38 38 H 1.08007 * 120.07232 * 179.40908 * 13 12 11 39 39 H 1.09003 * 110.94288 * 133.65808 * 14 12 11 40 40 H 1.08997 * 110.94283 * 257.31822 * 14 12 11 41 41 H 1.09007 * 110.74477 * 93.01666 * 15 14 12 42 42 H 1.08999 * 110.74773 * 216.16884 * 15 14 12 43 43 H 1.00900 * 111.00254 * 321.04655 * 17 2 1 44 44 H 1.09006 * 109.46879 * 300.00130 * 18 17 2 45 45 H 1.09000 * 109.47124 * 60.00009 * 18 17 2 46 46 H 0.96994 * 119.99532 * 0.02562 * 21 19 18 47 47 H 0.96990 * 119.99874 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5000 -0.8263 1.1905 6 6 4.1730 -1.4291 2.1905 7 8 3.5685 -1.8854 3.1417 8 6 5.6441 -1.5355 2.1312 9 6 6.3446 -1.0126 1.0408 10 6 7.7143 -1.1164 0.9847 11 6 8.4179 -1.7493 2.0108 12 6 7.7159 -2.2564 3.1004 13 6 6.3477 -2.1605 3.1650 14 6 8.7388 -2.8524 4.0486 15 6 10.0580 -2.2405 3.5208 16 8 9.7538 -1.9673 2.1426 17 7 2.0196 -0.6924 -1.1995 18 6 2.0824 0.2227 -2.3469 19 6 2.5872 -0.5216 -3.5561 20 8 2.8677 -1.6986 -3.4703 21 7 2.7272 0.1205 -4.7328 22 6 3.1870 -0.5566 -5.8327 23 1 3.4366 -1.6046 -5.7563 24 6 3.3317 0.1055 -7.0457 25 7 3.0284 1.3808 -7.1385 26 14 3.9575 -0.8172 -8.5445 27 1 3.0355 -1.9389 -8.8559 28 1 4.0216 0.1081 -9.7043 29 1 5.3134 -1.3540 -8.2647 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.6054 -1.7197 1.2951 34 1 1.7517 -0.1584 2.1369 35 1 3.9824 -0.4627 0.4315 36 1 5.8083 -0.5257 0.2397 37 1 8.2489 -0.7096 0.1391 38 1 5.8161 -2.5673 4.0127 39 1 8.5475 -2.5393 5.0751 40 1 8.7546 -3.9395 3.9714 41 1 10.2968 -1.3198 4.0533 42 1 10.8760 -2.9561 3.6040 43 1 1.4495 -1.4978 -1.4101 44 1 1.0870 0.6164 -2.5525 45 1 2.7588 1.0463 -2.1182 46 1 2.5033 1.0617 -4.8012 47 1 3.1298 1.8430 -7.9851 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690625592.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:22 Heat of formation + Delta-G solvation = -77.862716 kcal Electronic energy + Delta-G solvation = -29385.106859 eV Core-core repulsion = 25147.050604 eV Total energy + Delta-G solvation = -4238.056255 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.41085 -39.79478 -38.48194 -37.35234 -36.76124 -34.20898 -33.80157 -32.98065 -31.37006 -30.98502 -30.30733 -29.49518 -26.65313 -26.22996 -24.11361 -23.71817 -23.18855 -22.08128 -21.03894 -20.24334 -19.33688 -17.98615 -17.79043 -17.64171 -16.90652 -16.49249 -16.05035 -15.82986 -15.60739 -15.13935 -14.70481 -14.54909 -14.44651 -14.30096 -13.92594 -13.76884 -13.52474 -13.37652 -13.24847 -13.05127 -12.91079 -12.75757 -12.53209 -12.44187 -12.20889 -12.10008 -11.72579 -11.60486 -11.43925 -11.14088 -11.07208 -11.04152 -10.97278 -10.46431 -10.24195 -9.95956 -9.53037 -9.18789 -9.01441 -8.53692 -8.39440 -8.14925 -7.99588 -6.44824 -3.85758 0.67905 1.08934 2.71682 2.95940 3.18168 3.19557 3.24274 3.28616 3.68148 3.86581 4.02712 4.07026 4.24323 4.28010 4.54188 4.62538 4.71846 4.75968 4.91882 4.97445 5.00439 5.05206 5.09820 5.18473 5.24431 5.30572 5.36903 5.40888 5.47543 5.59287 5.67328 5.70841 5.77097 5.85832 5.93935 5.98593 6.02538 6.06971 6.12402 6.22281 6.23966 6.49382 6.84476 7.10613 7.52222 7.55455 7.61428 8.02681 8.26854 8.57571 9.14743 9.50622 10.01863 10.72725 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009028 B = 0.002439 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3100.776792 B =11479.229970 C =14138.091309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.067 3.933 3 H 0.084 0.916 4 C 0.135 3.865 5 N -0.707 5.707 6 C 0.562 3.438 7 O -0.552 6.552 8 C -0.162 4.162 9 C -0.042 4.042 10 C -0.143 4.143 11 C 0.130 3.870 12 C -0.190 4.190 13 C -0.010 4.010 14 C -0.108 4.108 15 C 0.051 3.949 16 O -0.302 6.302 17 N -0.664 5.664 18 C 0.049 3.951 19 C 0.439 3.561 20 O -0.582 6.582 21 N -0.563 5.563 22 C -0.300 4.300 23 H 0.102 0.898 24 C 0.023 3.977 25 N -0.902 5.902 26 Si 0.930 3.070 27 H -0.274 1.274 28 H -0.284 1.284 29 H -0.273 1.273 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.409 0.591 36 H 0.141 0.859 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.079 0.921 42 H 0.108 0.892 43 H 0.354 0.646 44 H 0.045 0.955 45 H 0.085 0.915 46 H 0.392 0.608 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.381 -0.181 21.474 22.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.044 4.044 3 H 0.103 0.897 4 C 0.010 3.990 5 N -0.358 5.358 6 C 0.350 3.650 7 O -0.432 6.432 8 C -0.166 4.166 9 C -0.061 4.061 10 C -0.162 4.162 11 C 0.084 3.916 12 C -0.191 4.191 13 C -0.029 4.029 14 C -0.145 4.145 15 C -0.024 4.024 16 O -0.215 6.215 17 N -0.297 5.297 18 C -0.083 4.083 19 C 0.224 3.776 20 O -0.466 6.466 21 N -0.199 5.199 22 C -0.430 4.430 23 H 0.120 0.880 24 C -0.179 4.179 25 N -0.543 5.543 26 Si 0.757 3.243 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.198 1.198 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.246 0.754 36 H 0.158 0.842 37 H 0.155 0.845 38 H 0.155 0.845 39 H 0.112 0.888 40 H 0.110 0.890 41 H 0.097 0.903 42 H 0.126 0.874 43 H 0.174 0.826 44 H 0.063 0.937 45 H 0.104 0.896 46 H 0.225 0.775 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.980 -1.076 22.005 23.110 hybrid contribution -0.605 0.455 -1.424 1.613 sum 6.375 -0.622 20.580 21.554 Atomic orbital electron populations 1.22431 0.96183 1.02764 1.02630 1.21865 0.93449 0.98326 0.90733 0.89741 1.21342 0.79899 1.01048 0.96699 1.45702 1.07823 1.59003 1.23269 1.18034 0.86727 0.77847 0.82408 1.90748 1.69914 1.48738 1.33802 1.19767 0.93234 1.06314 0.97248 1.21135 0.93094 0.95524 0.96364 1.20233 0.93498 1.02925 0.99529 1.19861 0.83317 0.93275 0.95147 1.20669 0.94547 1.05263 0.98572 1.20294 0.91321 0.93890 0.97419 1.21791 0.91754 1.01537 0.99453 1.23873 0.98020 1.00956 0.79573 1.86812 1.20818 1.85436 1.28432 1.60184 1.57757 1.09225 1.02552 1.21723 1.00086 0.95615 0.90907 1.19802 0.85338 0.88270 0.84196 1.90541 1.55284 1.16214 1.84602 1.41859 1.57699 1.12441 1.07933 1.19646 1.40119 0.96425 0.86766 0.87980 1.25257 0.97590 0.95768 0.99254 1.69596 1.48546 1.08838 1.27317 0.85926 0.79494 0.78835 0.80030 1.19914 1.20973 1.19844 0.91945 0.91830 0.91908 0.91399 0.91255 0.75400 0.84182 0.84498 0.84498 0.88845 0.88956 0.90324 0.87412 0.82575 0.93682 0.89642 0.77489 0.91796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.69 9.16 37.16 0.34 -1.35 16 2 C 0.07 0.72 2.75 -67.72 -0.19 0.53 16 3 H 0.08 0.83 7.80 -51.92 -0.40 0.43 16 4 C 0.13 1.54 5.37 -4.05 -0.02 1.52 16 5 N -0.71 -8.77 5.34 -61.33 -0.33 -9.10 16 6 C 0.56 7.90 7.77 -12.44 -0.10 7.80 16 7 O -0.55 -9.26 16.36 5.29 0.09 -9.17 16 8 C -0.16 -2.05 5.88 -104.92 -0.62 -2.66 16 9 C -0.04 -0.49 9.52 -39.30 -0.37 -0.86 16 10 C -0.14 -1.62 10.05 -39.36 -0.40 -2.02 16 11 C 0.13 1.49 7.05 -38.73 -0.27 1.22 16 12 C -0.19 -2.01 6.26 -104.13 -0.65 -2.66 16 13 C -0.01 -0.12 9.58 -39.34 -0.38 -0.50 16 14 C -0.11 -0.77 7.12 -26.51 -0.19 -0.96 16 15 C 0.05 0.34 8.01 38.05 0.30 0.64 16 16 O -0.30 -3.25 11.09 -19.74 -0.22 -3.47 16 17 N -0.66 -9.42 5.31 -107.99 -0.57 -10.00 16 18 C 0.05 0.78 5.96 -4.98 -0.03 0.75 16 19 C 0.44 9.79 7.82 -10.99 -0.09 9.70 16 20 O -0.58 -15.17 15.78 5.54 0.09 -15.09 16 21 N -0.56 -13.73 5.29 -10.97 -0.06 -13.79 16 22 C -0.30 -8.18 9.68 -14.93 -0.14 -8.33 16 23 H 0.10 2.93 7.16 -52.49 -0.38 2.56 16 24 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 25 N -0.90 -24.07 13.05 55.50 0.72 -23.34 16 26 Si 0.93 20.79 29.55 -169.99 -5.02 15.76 16 27 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 28 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 29 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 30 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.61 7.45 -51.93 -0.39 0.22 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.41 4.84 6.17 -40.82 -0.25 4.58 16 36 H 0.14 1.43 6.40 -52.49 -0.34 1.09 16 37 H 0.14 1.37 8.06 -52.49 -0.42 0.95 16 38 H 0.14 1.54 7.66 -52.48 -0.40 1.14 16 39 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.08 0.42 8.14 -51.92 -0.42 0.00 16 42 H 0.11 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.35 5.47 8.17 -39.29 -0.32 5.15 16 44 H 0.05 0.65 7.44 -51.93 -0.39 0.26 16 45 H 0.09 1.21 8.06 -51.93 -0.42 0.79 16 46 H 0.39 9.13 7.90 -40.82 -0.32 8.81 16 47 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 396.25 15.07 5.97 5.97 Total: -1.00 -33.45 396.25 -8.77 -42.21 By element: Atomic # 1 Polarization: 23.20 SS G_CDS: -6.54 Total: 16.65 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: -2.89 Total: 3.35 kcal Atomic # 7 Polarization: -55.99 SS G_CDS: -0.24 Total: -56.23 kcal Atomic # 8 Polarization: -27.68 SS G_CDS: -0.04 Total: -27.73 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.45 -8.77 -42.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690625592.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.648 kcal (2) G-P(sol) polarization free energy of solvation -33.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds