Wall clock time and date at job start Wed Apr 1 2020 05:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.46820 * 2 1 4 4 O 1.42900 * 109.47105 * 239.99829 * 2 1 3 5 5 C 1.35906 * 116.99944 * 85.34104 * 4 2 1 6 6 C 1.39133 * 120.47658 * 354.64744 * 5 4 2 7 7 C 1.38541 * 118.37827 * 180.02562 * 6 5 4 8 8 C 1.38254 * 119.21665 * 359.97438 * 7 6 5 9 9 N 1.31845 * 120.89087 * 0.02562 * 8 7 6 10 10 C 1.31850 * 121.77833 * 359.70182 * 9 8 7 11 11 C 1.50704 * 109.46895 * 119.99547 * 2 1 3 12 12 O 1.21279 * 119.99808 * 120.00060 * 11 2 1 13 13 N 1.34776 * 120.00202 * 300.00205 * 11 2 1 14 14 C 1.46499 * 119.99889 * 179.97438 * 13 11 2 15 15 H 1.08998 * 111.00376 * 322.28511 * 14 13 11 16 16 C 1.55021 * 111.10218 * 86.45465 * 14 13 11 17 17 O 1.43912 * 105.17932 * 81.91375 * 16 14 13 18 18 C 1.42401 * 109.55670 * 24.29955 * 17 16 14 19 19 C 1.52691 * 116.14426 * 129.84429 * 18 17 16 20 20 N 1.47213 * 87.79866 * 90.69810 * 19 18 17 21 21 C 1.36936 * 135.97127 * 206.45686 * 20 19 18 22 22 H 1.07998 * 120.00556 * 350.32463 * 21 20 19 23 23 C 1.38811 * 119.99767 * 170.32642 * 21 20 19 24 24 N 1.31624 * 120.00399 * 156.76320 * 23 21 20 25 25 Si 1.86807 * 120.00174 * 336.76395 * 23 21 20 26 26 H 1.48498 * 109.47323 * 89.99681 * 25 23 21 27 27 H 1.48502 * 109.47145 * 210.00110 * 25 23 21 28 28 H 1.48504 * 109.46561 * 330.00053 * 25 23 21 29 29 C 1.47205 * 88.05075 * 26.71289 * 20 19 18 30 30 C 1.53655 * 108.53157 * 358.07681 * 18 17 16 31 31 H 1.09005 * 109.47073 * 60.00584 * 1 2 3 32 32 H 1.09004 * 109.47242 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47812 * 300.00388 * 1 2 3 34 34 H 1.07999 * 120.81352 * 0.02714 * 6 5 4 35 35 H 1.07995 * 120.38726 * 179.97438 * 7 6 5 36 36 H 1.08000 * 119.54936 * 179.97438 * 8 7 6 37 37 H 1.07996 * 119.65860 * 180.29577 * 10 9 8 38 38 H 0.96996 * 119.99723 * 359.97438 * 13 11 2 39 39 H 1.08996 * 110.30151 * 322.98841 * 16 14 13 40 40 H 1.08998 * 110.38032 * 200.87935 * 16 14 13 41 41 H 1.09001 * 113.49815 * 335.96262 * 19 18 17 42 42 H 1.09004 * 113.55545 * 205.43729 * 19 18 17 43 43 H 0.97001 * 119.99526 * 5.10643 * 24 23 21 44 44 H 1.08996 * 113.50370 * 88.02311 * 29 20 19 45 45 H 1.09008 * 113.49902 * 218.55915 * 29 20 19 46 46 H 1.09001 * 110.92810 * 97.30653 * 30 18 17 47 47 H 1.09006 * 110.92941 * 220.96753 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.1192 0.0643 -2.3024 6 6 1.6767 1.3830 -2.3340 7 6 1.8124 2.0950 -3.5147 8 6 2.3791 1.4771 -4.6140 9 7 2.7885 0.2255 -4.5507 10 6 2.6822 -0.4848 -3.4450 11 6 2.0323 -0.7103 1.2306 12 8 2.7295 -1.6964 1.1194 13 7 1.7066 -0.2498 2.4546 14 6 2.1945 -0.9407 3.6508 15 1 2.1955 -2.0209 3.5050 16 6 3.6014 -0.4307 4.0552 17 8 3.3648 0.7811 4.7945 18 6 2.0528 0.7536 5.3475 19 6 1.9434 1.0741 6.8364 20 7 1.7653 2.4865 6.4613 21 6 2.0008 3.6992 7.0520 22 1 2.2735 3.7477 8.0958 23 6 1.8888 4.8664 6.3090 24 7 1.6580 6.0123 6.9141 25 14 2.0658 4.8110 4.4502 26 1 0.7344 4.5846 3.8327 27 1 2.6227 6.1002 3.9673 28 1 2.9811 3.7041 4.0730 29 6 1.2172 2.0238 5.1759 30 6 1.3629 -0.5457 4.9038 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3635 0.5139 0.8899 34 1 1.2380 1.8404 -1.4595 35 1 1.4795 3.1205 -3.5755 36 1 2.4872 2.0270 -5.5372 37 1 3.0331 -1.5061 -3.4301 38 1 1.1493 0.5390 2.5435 39 1 4.1975 -0.2214 3.1670 40 1 4.1052 -1.1649 4.6838 41 1 2.8627 0.8842 7.3906 42 1 1.0658 0.6370 7.3128 43 1 1.6397 6.0539 7.8831 44 1 0.1425 1.8436 5.2012 45 1 1.5230 2.6359 4.3274 46 1 1.4375 -1.3099 5.6774 47 1 0.3217 -0.3626 4.6383 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724883598.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:46 Heat of formation + Delta-G solvation = 2.211986 kcal Electronic energy + Delta-G solvation = -30890.710956 eV Core-core repulsion = 26656.127001 eV Total energy + Delta-G solvation = -4234.583956 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.28724 -40.63159 -39.63254 -38.25994 -36.63801 -34.64072 -32.86823 -32.53406 -32.40413 -30.77211 -30.17602 -28.52677 -25.77711 -25.51809 -25.36115 -24.15666 -23.41378 -21.93463 -21.23291 -20.65430 -19.33380 -18.85903 -18.03018 -17.55586 -17.14479 -16.82475 -16.53292 -16.10887 -15.85383 -15.39547 -15.14335 -14.86612 -14.71357 -14.37760 -14.15874 -13.94107 -13.82603 -13.60917 -13.45861 -13.39095 -12.95182 -12.82956 -12.77601 -12.58361 -12.02307 -11.97763 -11.75050 -11.71894 -11.58683 -11.26722 -10.84404 -10.72297 -10.43799 -10.22872 -10.02875 -9.94391 -9.70945 -9.43850 -9.28000 -8.84420 -8.80673 -8.62584 -7.22195 -6.37520 -3.22753 0.76678 0.85388 2.13053 2.22464 3.13797 3.30397 3.43455 3.50169 3.65637 3.84752 4.04758 4.16885 4.20868 4.29133 4.34876 4.38996 4.48485 4.56170 4.67537 4.71388 4.74612 4.79022 4.83928 4.94633 5.05201 5.09983 5.23473 5.36153 5.40627 5.53037 5.57815 5.63716 5.64813 5.66328 5.68411 5.76312 5.99754 6.06389 6.10029 6.16085 6.23137 6.33975 6.38327 6.76026 7.10707 7.12850 7.42501 7.60037 7.83565 8.22764 8.93736 9.48943 10.35529 11.13137 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012333 B = 0.002983 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2269.771267 B = 9385.150538 C =11026.351603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.063 3.937 3 H 0.103 0.897 4 O -0.277 6.277 5 C 0.082 3.918 6 C -0.169 4.169 7 C -0.129 4.129 8 C 0.056 3.944 9 N -0.447 5.447 10 C 0.077 3.923 11 C 0.523 3.477 12 O -0.516 6.516 13 N -0.710 5.710 14 C 0.113 3.887 15 H 0.109 0.891 16 C 0.037 3.963 17 O -0.334 6.334 18 C 0.064 3.936 19 C 0.114 3.886 20 N -0.615 5.615 21 C -0.309 4.309 22 H 0.079 0.921 23 C -0.020 4.020 24 N -0.923 5.923 25 Si 1.057 2.943 26 H -0.295 1.295 27 H -0.296 1.296 28 H -0.276 1.276 29 C 0.098 3.902 30 C -0.144 4.144 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.143 0.857 35 H 0.140 0.860 36 H 0.159 0.841 37 H 0.165 0.835 38 H 0.405 0.595 39 H 0.085 0.915 40 H 0.072 0.928 41 H 0.052 0.948 42 H 0.051 0.949 43 H 0.262 0.738 44 H 0.052 0.948 45 H 0.051 0.949 46 H 0.098 0.902 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.841 -14.352 -17.701 23.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.002 3.998 3 H 0.120 0.880 4 O -0.188 6.188 5 C 0.034 3.966 6 C -0.196 4.196 7 C -0.148 4.148 8 C -0.101 4.101 9 N -0.156 5.156 10 C -0.082 4.082 11 C 0.307 3.693 12 O -0.390 6.390 13 N -0.364 5.364 14 C 0.008 3.992 15 H 0.127 0.873 16 C -0.041 4.041 17 O -0.252 6.252 18 C 0.023 3.977 19 C -0.013 4.013 20 N -0.342 5.342 21 C -0.435 4.435 22 H 0.097 0.903 23 C -0.220 4.220 24 N -0.564 5.564 25 Si 0.889 3.111 26 H -0.223 1.223 27 H -0.224 1.224 28 H -0.203 1.203 29 C -0.028 4.028 30 C -0.183 4.183 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.102 0.898 34 H 0.160 0.840 35 H 0.158 0.842 36 H 0.176 0.824 37 H 0.182 0.818 38 H 0.241 0.759 39 H 0.103 0.897 40 H 0.090 0.910 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.073 0.927 44 H 0.069 0.931 45 H 0.069 0.931 46 H 0.117 0.883 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.784 -14.312 -19.672 24.486 hybrid contribution -0.809 0.080 2.367 2.503 sum -3.592 -14.232 -17.305 22.692 Atomic orbital electron populations 1.22365 0.92152 1.04709 1.04281 1.22273 0.96070 0.97343 0.84064 0.87969 1.86223 1.80828 1.36258 1.15483 1.20247 0.96799 0.91248 0.88267 1.21835 1.03464 0.93952 1.00316 1.22045 0.98596 1.01251 0.92935 1.22708 0.97259 0.91216 0.98908 1.67760 1.14895 1.07502 1.25469 1.22262 0.98706 1.01037 0.86176 1.19948 0.80626 0.84793 0.83926 1.90751 1.36474 1.25397 1.86379 1.45785 1.53773 1.32232 1.04597 1.22637 0.94339 0.98152 0.84093 0.87279 1.23909 0.96048 0.87982 0.96133 1.88488 1.30288 1.37692 1.68715 1.23290 0.84039 0.93639 0.96774 1.22679 0.99030 0.86597 0.92984 1.45658 1.71754 1.00509 1.16310 1.19948 1.47598 0.81152 0.94777 0.90336 1.25713 0.98692 0.91170 1.06392 1.70942 1.47565 1.26982 1.10950 0.83880 0.76527 0.74811 0.75900 1.22343 1.22372 1.20254 1.23045 0.95617 0.92121 0.92000 1.23263 1.00456 0.98376 0.96237 0.90511 0.90324 0.89764 0.83968 0.84233 0.82407 0.81790 0.75936 0.89650 0.90999 0.92986 0.93157 0.92742 0.93112 0.93125 0.88343 0.88966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.19 9.10 37.16 0.34 -0.85 16 2 C 0.06 0.58 2.65 -27.88 -0.07 0.51 16 3 H 0.10 0.81 6.32 -51.93 -0.33 0.48 16 4 O -0.28 -3.11 9.34 -39.35 -0.37 -3.47 16 5 C 0.08 0.84 6.62 -39.08 -0.26 0.58 16 6 C -0.17 -1.41 8.36 -39.14 -0.33 -1.74 16 7 C -0.13 -0.95 10.11 -39.46 -0.40 -1.35 16 8 C 0.06 0.46 11.18 -17.54 -0.20 0.27 16 9 N -0.45 -4.70 10.36 -13.12 -0.14 -4.84 16 10 C 0.08 0.80 11.14 -17.37 -0.19 0.60 16 11 C 0.52 6.11 7.23 -10.98 -0.08 6.03 16 12 O -0.52 -7.87 16.25 -14.35 -0.23 -8.11 16 13 N -0.71 -7.50 5.13 -51.50 -0.26 -7.76 16 14 C 0.11 1.25 3.37 -65.54 -0.22 1.03 16 15 H 0.11 1.12 7.74 -51.93 -0.40 0.72 16 16 C 0.04 0.50 7.49 38.23 0.29 0.79 16 17 O -0.33 -6.03 11.18 -35.23 -0.39 -6.42 16 18 C 0.06 1.05 1.75 -90.44 -0.16 0.89 16 19 C 0.11 2.17 8.20 -8.09 -0.07 2.10 16 20 N -0.61 -14.97 3.57 -184.63 -0.66 -15.63 16 21 C -0.31 -8.91 10.95 -15.06 -0.16 -9.08 16 22 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16 23 C -0.02 -0.58 5.50 -17.43 -0.10 -0.68 16 24 N -0.92 -28.93 13.70 55.49 0.76 -28.17 16 25 Si 1.06 26.30 25.31 -169.99 -4.30 21.99 16 26 H -0.30 -6.75 7.11 56.52 0.40 -6.35 16 27 H -0.30 -7.48 7.11 56.52 0.40 -7.08 16 28 H -0.28 -6.66 6.60 56.52 0.37 -6.29 16 29 C 0.10 1.93 6.69 -7.93 -0.05 1.88 16 30 C -0.14 -1.58 5.97 -25.07 -0.15 -1.73 16 31 H 0.08 0.45 6.99 -51.93 -0.36 0.08 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.43 7.57 -51.93 -0.39 0.04 16 34 H 0.14 0.92 5.61 -52.49 -0.29 0.63 16 35 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 36 H 0.16 0.88 8.06 -52.49 -0.42 0.46 16 37 H 0.16 1.48 8.06 -52.49 -0.42 1.06 16 38 H 0.41 3.76 8.04 -40.82 -0.33 3.43 16 39 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.05 0.85 8.13 -51.93 -0.42 0.43 16 43 H 0.26 8.11 8.73 -40.82 -0.36 7.76 16 44 H 0.05 0.89 7.95 -51.93 -0.41 0.48 16 45 H 0.05 1.05 3.78 -51.92 -0.20 0.86 16 46 H 0.10 0.90 8.13 -51.93 -0.42 0.48 16 47 H 0.09 0.86 7.81 -51.93 -0.41 0.45 16 LS Contribution 383.54 15.07 5.78 5.78 Total: -1.00 -37.45 383.54 -8.16 -45.61 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -6.53 Total: 1.79 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: -1.81 Total: -0.76 kcal Atomic # 7 Polarization: -56.10 SS G_CDS: -0.30 Total: -56.40 kcal Atomic # 8 Polarization: -17.01 SS G_CDS: -0.99 Total: -18.01 kcal Atomic # 14 Polarization: 26.30 SS G_CDS: -4.30 Total: 21.99 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -37.45 -8.16 -45.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724883598.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.819 kcal (2) G-P(sol) polarization free energy of solvation -37.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds