Wall clock time and date at job start Wed Apr 1 2020 05:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.46820 * 2 1 4 4 O 1.42900 * 109.47105 * 239.99829 * 2 1 3 5 5 C 1.35906 * 116.99944 * 85.34104 * 4 2 1 6 6 C 1.39133 * 120.47658 * 354.64744 * 5 4 2 7 7 C 1.38541 * 118.37827 * 180.02562 * 6 5 4 8 8 C 1.38254 * 119.21665 * 359.97438 * 7 6 5 9 9 N 1.31845 * 120.89087 * 0.02562 * 8 7 6 10 10 C 1.31850 * 121.77833 * 359.70182 * 9 8 7 11 11 C 1.50704 * 109.46895 * 119.99547 * 2 1 3 12 12 O 1.21279 * 119.99808 * 120.00060 * 11 2 1 13 13 N 1.34776 * 120.00202 * 300.00205 * 11 2 1 14 14 C 1.46499 * 119.99889 * 179.97438 * 13 11 2 15 15 H 1.08998 * 111.00376 * 322.28511 * 14 13 11 16 16 C 1.55021 * 111.10218 * 86.45465 * 14 13 11 17 17 O 1.43912 * 105.17932 * 81.91375 * 16 14 13 18 18 C 1.42401 * 109.55670 * 24.29955 * 17 16 14 19 19 C 1.52691 * 116.14426 * 129.84429 * 18 17 16 20 20 N 1.47213 * 87.79866 * 90.69810 * 19 18 17 21 21 C 1.36936 * 135.97127 * 206.45686 * 20 19 18 22 22 H 1.07998 * 120.00556 * 350.32463 * 21 20 19 23 23 C 1.38811 * 119.99767 * 170.32642 * 21 20 19 24 24 N 1.31624 * 120.00399 * 156.76320 * 23 21 20 25 25 Si 1.86807 * 120.00174 * 336.76395 * 23 21 20 26 26 H 1.48498 * 109.47323 * 89.99681 * 25 23 21 27 27 H 1.48502 * 109.47145 * 210.00110 * 25 23 21 28 28 H 1.48504 * 109.46561 * 330.00053 * 25 23 21 29 29 C 1.47205 * 88.05075 * 26.71289 * 20 19 18 30 30 C 1.53655 * 108.53157 * 358.07681 * 18 17 16 31 31 H 1.09005 * 109.47073 * 60.00584 * 1 2 3 32 32 H 1.09004 * 109.47242 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47812 * 300.00388 * 1 2 3 34 34 H 1.07999 * 120.81352 * 0.02714 * 6 5 4 35 35 H 1.07995 * 120.38726 * 179.97438 * 7 6 5 36 36 H 1.08000 * 119.54936 * 179.97438 * 8 7 6 37 37 H 1.07996 * 119.65860 * 180.29577 * 10 9 8 38 38 H 0.96996 * 119.99723 * 359.97438 * 13 11 2 39 39 H 1.08996 * 110.30151 * 322.98841 * 16 14 13 40 40 H 1.08998 * 110.38032 * 200.87935 * 16 14 13 41 41 H 1.09001 * 113.49815 * 335.96262 * 19 18 17 42 42 H 1.09004 * 113.55545 * 205.43729 * 19 18 17 43 43 H 0.97001 * 119.99526 * 5.10643 * 24 23 21 44 44 H 1.08996 * 113.50370 * 88.02311 * 29 20 19 45 45 H 1.09008 * 113.49902 * 218.55915 * 29 20 19 46 46 H 1.09001 * 110.92810 * 97.30653 * 30 18 17 47 47 H 1.09006 * 110.92941 * 220.96753 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.1192 0.0643 -2.3024 6 6 1.6767 1.3830 -2.3340 7 6 1.8124 2.0950 -3.5147 8 6 2.3791 1.4771 -4.6140 9 7 2.7885 0.2255 -4.5507 10 6 2.6822 -0.4848 -3.4450 11 6 2.0323 -0.7103 1.2306 12 8 2.7295 -1.6964 1.1194 13 7 1.7066 -0.2498 2.4546 14 6 2.1945 -0.9407 3.6508 15 1 2.1955 -2.0209 3.5050 16 6 3.6014 -0.4307 4.0552 17 8 3.3648 0.7811 4.7945 18 6 2.0528 0.7536 5.3475 19 6 1.9434 1.0741 6.8364 20 7 1.7653 2.4865 6.4613 21 6 2.0008 3.6992 7.0520 22 1 2.2735 3.7477 8.0958 23 6 1.8888 4.8664 6.3090 24 7 1.6580 6.0123 6.9141 25 14 2.0658 4.8110 4.4502 26 1 0.7344 4.5846 3.8327 27 1 2.6227 6.1002 3.9673 28 1 2.9811 3.7041 4.0730 29 6 1.2172 2.0238 5.1759 30 6 1.3629 -0.5457 4.9038 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3635 0.5139 0.8899 34 1 1.2380 1.8404 -1.4595 35 1 1.4795 3.1205 -3.5755 36 1 2.4872 2.0270 -5.5372 37 1 3.0331 -1.5061 -3.4301 38 1 1.1493 0.5390 2.5435 39 1 4.1975 -0.2214 3.1670 40 1 4.1052 -1.1649 4.6838 41 1 2.8627 0.8842 7.3906 42 1 1.0658 0.6370 7.3128 43 1 1.6397 6.0539 7.8831 44 1 0.1425 1.8436 5.2012 45 1 1.5230 2.6359 4.3274 46 1 1.4375 -1.3099 5.6774 47 1 0.3217 -0.3626 4.6383 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724883598.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:45 Heat of formation + Delta-G solvation = -26.594983 kcal Electronic energy + Delta-G solvation = -30891.960120 eV Core-core repulsion = 26656.127001 eV Total energy + Delta-G solvation = -4235.833120 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.08570 -41.64852 -40.59050 -39.07090 -38.01750 -35.65350 -34.51920 -33.57428 -33.17455 -31.70557 -30.94100 -30.00374 -27.28241 -26.97480 -26.04904 -24.83258 -24.13571 -23.32245 -22.42282 -21.52434 -20.75582 -19.59823 -19.49362 -18.79324 -17.99030 -17.65331 -17.46984 -17.13148 -16.82208 -16.56209 -16.29149 -15.86727 -15.75081 -15.46753 -15.36038 -15.18065 -14.89760 -14.74335 -14.52641 -14.30408 -14.06580 -13.96947 -13.41993 -13.33819 -13.12518 -12.90882 -12.82360 -12.66868 -12.63650 -12.57091 -12.30005 -12.22941 -11.89840 -11.40282 -11.33131 -10.99857 -10.74617 -10.72901 -10.59511 -10.47517 -10.07694 -9.48129 -9.22242 -8.66052 -5.42036 0.13591 0.21740 1.32789 1.36659 1.41016 1.54382 1.72843 2.40818 2.52089 2.67765 2.78986 2.94299 3.25053 3.37017 3.41947 3.53021 3.56631 3.61738 3.65840 3.75165 3.80567 3.89987 3.96104 4.13549 4.30563 4.32156 4.54176 4.60364 4.60835 4.63394 4.64896 4.67548 4.71281 4.77314 4.80378 4.91191 4.93057 4.96546 5.00844 5.07619 5.12818 5.28138 5.32970 5.43581 5.97377 6.09303 6.21230 6.35765 6.70570 6.95391 7.01155 7.35561 8.32013 8.86524 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012333 B = 0.002983 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2269.771267 B = 9385.150538 C =11026.351603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.060 3.940 3 H 0.118 0.882 4 O -0.300 6.300 5 C 0.069 3.931 6 C -0.170 4.170 7 C -0.123 4.123 8 C 0.048 3.952 9 N -0.473 5.473 10 C 0.055 3.945 11 C 0.523 3.477 12 O -0.558 6.558 13 N -0.703 5.703 14 C 0.120 3.880 15 H 0.123 0.877 16 C 0.032 3.968 17 O -0.372 6.372 18 C 0.082 3.918 19 C 0.107 3.893 20 N -0.656 5.656 21 C -0.297 4.297 22 H 0.040 0.960 23 C -0.082 4.082 24 N -0.961 5.961 25 Si 1.104 2.896 26 H -0.257 1.257 27 H -0.307 1.307 28 H -0.269 1.269 29 C 0.090 3.910 30 C -0.126 4.126 31 H 0.087 0.913 32 H 0.071 0.929 33 H 0.105 0.895 34 H 0.164 0.836 35 H 0.171 0.829 36 H 0.183 0.817 37 H 0.162 0.838 38 H 0.414 0.586 39 H 0.074 0.926 40 H 0.088 0.912 41 H 0.037 0.963 42 H 0.082 0.918 43 H 0.246 0.754 44 H 0.085 0.915 45 H 0.042 0.958 46 H 0.125 0.875 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.826 -15.551 -19.614 25.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.001 3.999 3 H 0.135 0.865 4 O -0.212 6.212 5 C 0.021 3.979 6 C -0.196 4.196 7 C -0.143 4.143 8 C -0.109 4.109 9 N -0.182 5.182 10 C -0.103 4.103 11 C 0.309 3.691 12 O -0.436 6.436 13 N -0.356 5.356 14 C 0.015 3.985 15 H 0.141 0.859 16 C -0.045 4.045 17 O -0.291 6.291 18 C 0.041 3.959 19 C -0.018 4.018 20 N -0.384 5.384 21 C -0.425 4.425 22 H 0.057 0.943 23 C -0.275 4.275 24 N -0.605 5.605 25 Si 0.930 3.070 26 H -0.182 1.182 27 H -0.235 1.235 28 H -0.195 1.195 29 C -0.035 4.035 30 C -0.165 4.165 31 H 0.106 0.894 32 H 0.090 0.910 33 H 0.124 0.876 34 H 0.181 0.819 35 H 0.189 0.811 36 H 0.200 0.800 37 H 0.179 0.821 38 H 0.251 0.749 39 H 0.092 0.908 40 H 0.106 0.894 41 H 0.055 0.945 42 H 0.100 0.900 43 H 0.055 0.945 44 H 0.102 0.898 45 H 0.060 0.940 46 H 0.143 0.857 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -4.804 -15.570 -21.576 27.038 hybrid contribution -0.107 0.401 3.057 3.085 sum -4.912 -15.169 -18.520 24.438 Atomic orbital electron populations 1.22378 0.89900 1.04810 1.05847 1.22437 0.97686 0.97309 0.82491 0.86489 1.86185 1.81426 1.37355 1.16203 1.20312 0.97617 0.92121 0.87860 1.22139 1.02847 0.93166 1.01466 1.22411 0.97352 1.02461 0.92053 1.23235 0.96588 0.90687 1.00385 1.67753 1.15939 1.08758 1.25768 1.22322 0.99751 1.01392 0.86791 1.20389 0.79736 0.84223 0.84802 1.90733 1.38432 1.27396 1.86998 1.45764 1.53358 1.32303 1.04209 1.22597 0.92724 0.98825 0.84343 0.85894 1.24081 0.97768 0.86991 0.95706 1.88457 1.31316 1.40030 1.69265 1.22990 0.83727 0.94973 0.94255 1.22995 0.99540 0.83907 0.95401 1.45824 1.73032 1.00910 1.18664 1.19803 1.45490 0.83863 0.93347 0.94255 1.27063 0.99083 0.90774 1.10581 1.71050 1.51208 1.28343 1.09923 0.83275 0.78359 0.74322 0.71062 1.18206 1.23523 1.19549 1.23386 0.97719 0.93190 0.89156 1.23252 1.01089 0.95659 0.96453 0.89420 0.90995 0.87649 0.81887 0.81127 0.80005 0.82053 0.74879 0.90784 0.89423 0.94501 0.90046 0.94457 0.89784 0.93979 0.85651 0.86130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.71 9.10 71.98 0.65 -1.05 16 2 C 0.06 0.97 2.65 29.85 0.08 1.05 16 3 H 0.12 1.49 6.32 -2.39 -0.02 1.48 16 4 O -0.30 -6.45 9.34 -73.46 -0.69 -7.14 16 5 C 0.07 1.32 6.62 22.60 0.15 1.47 16 6 C -0.17 -2.40 8.36 22.56 0.19 -2.21 16 7 C -0.12 -1.46 10.11 22.35 0.23 -1.24 16 8 C 0.05 0.71 11.18 84.69 0.95 1.65 16 9 N -0.47 -9.70 10.36 -195.44 -2.02 -11.73 16 10 C 0.06 1.15 11.14 84.80 0.94 2.09 16 11 C 0.52 11.00 7.23 87.66 0.63 11.64 16 12 O -0.56 -16.40 16.25 16.01 0.26 -16.14 16 13 N -0.70 -12.28 5.13 -435.24 -2.23 -14.51 16 14 C 0.12 2.19 3.37 46.54 0.16 2.35 16 15 H 0.12 2.04 7.74 -2.39 -0.02 2.02 16 16 C 0.03 0.78 7.49 72.67 0.54 1.32 16 17 O -0.37 -12.65 11.18 -148.98 -1.67 -14.31 16 18 C 0.08 2.40 1.75 -10.67 -0.02 2.38 16 19 C 0.11 3.84 8.20 83.37 0.68 4.53 16 20 N -0.66 -31.24 3.57 -739.11 -2.64 -33.88 16 21 C -0.30 -17.55 10.95 84.03 0.92 -16.63 16 22 H 0.04 2.54 8.06 -2.91 -0.02 2.52 16 23 C -0.08 -4.94 5.50 84.86 0.47 -4.47 16 24 N -0.96 -62.13 13.70 21.65 0.30 -61.84 16 25 Si 1.10 52.68 25.31 68.60 1.74 54.42 16 26 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 27 H -0.31 -15.03 7.11 99.48 0.71 -14.32 16 28 H -0.27 -12.37 6.60 99.48 0.66 -11.71 16 29 C 0.09 3.22 6.69 83.48 0.56 3.78 16 30 C -0.13 -2.10 5.97 31.67 0.19 -1.91 16 31 H 0.09 0.70 6.99 -2.38 -0.02 0.68 16 32 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 33 H 0.10 0.59 7.57 -2.39 -0.02 0.57 16 34 H 0.16 1.50 5.61 -2.91 -0.02 1.48 16 35 H 0.17 0.91 8.06 -2.91 -0.02 0.88 16 36 H 0.18 1.59 8.06 -2.91 -0.02 1.56 16 37 H 0.16 3.13 8.06 -2.91 -0.02 3.11 16 38 H 0.41 5.77 8.04 -92.71 -0.75 5.03 16 39 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.08 2.45 8.13 -2.39 -0.02 2.43 16 43 H 0.25 16.04 8.73 -92.71 -0.81 15.23 16 44 H 0.08 2.50 7.95 -2.39 -0.02 2.48 16 45 H 0.04 1.59 3.78 -2.38 -0.01 1.59 16 46 H 0.13 1.54 8.13 -2.39 -0.02 1.52 16 47 H 0.12 1.43 7.81 -2.38 -0.02 1.41 16 Total: -1.00 -86.78 383.54 0.55 -86.23 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: 0.17 Total: 14.13 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: 7.32 Total: 4.76 kcal Atomic # 7 Polarization: -115.35 SS G_CDS: -6.60 Total: -121.95 kcal Atomic # 8 Polarization: -35.50 SS G_CDS: -2.09 Total: -37.59 kcal Atomic # 14 Polarization: 52.68 SS G_CDS: 1.74 Total: 54.42 kcal Total: -86.78 0.55 -86.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724883598.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.637 kcal (2) G-P(sol) polarization free energy of solvation -86.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds