Wall clock time and date at job start Wed Apr 1 2020 04:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46502 * 109.47030 * 2 1 4 4 C 1.34779 * 119.99854 * 179.97438 * 3 2 1 5 5 O 1.21547 * 119.99590 * 0.02562 * 4 3 2 6 6 C 1.47855 * 119.99915 * 180.02562 * 4 3 2 7 7 C 1.39628 * 120.11058 * 359.97438 * 6 4 3 8 8 C 1.37985 * 120.00963 * 180.02562 * 7 6 4 9 9 C 1.38242 * 120.22897 * 359.72458 * 8 7 6 10 10 C 1.50700 * 119.89324 * 180.27809 * 9 8 7 11 11 C 1.39003 * 120.21508 * 0.54825 * 9 8 7 12 12 N 1.39757 * 120.00422 * 179.72316 * 11 9 8 13 13 C 1.34780 * 119.99655 * 148.03738 * 12 11 9 14 14 O 1.21375 * 120.00334 * 4.51940 * 13 12 11 15 15 C 1.49354 * 119.99774 * 184.52411 * 13 12 11 16 16 O 1.21362 * 119.99949 * 359.97438 * 15 13 12 17 17 N 1.34773 * 120.00238 * 179.97438 * 15 13 12 18 18 C 1.46504 * 120.00227 * 179.97438 * 17 15 13 19 19 H 1.09000 * 109.47039 * 35.00032 * 18 17 15 20 20 C 1.52998 * 109.47126 * 275.00179 * 18 17 15 21 21 C 1.50696 * 109.47159 * 155.00232 * 18 17 15 22 22 H 1.08004 * 119.99563 * 5.57310 * 21 18 17 23 23 C 1.37874 * 119.99969 * 185.57783 * 21 18 17 24 24 N 1.31516 * 119.99797 * 198.76199 * 23 21 18 25 25 Si 1.86794 * 120.00115 * 19.03753 * 23 21 18 26 26 H 1.48502 * 109.47301 * 179.72700 * 25 23 21 27 27 H 1.48499 * 109.47185 * 299.72635 * 25 23 21 28 28 H 1.48500 * 109.47006 * 59.72805 * 25 23 21 29 29 C 1.38698 * 119.98733 * 359.45423 * 11 9 8 30 30 H 1.09002 * 109.47279 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47331 * 299.99891 * 1 2 3 32 32 H 1.09007 * 109.46773 * 59.99804 * 1 2 3 33 33 H 1.09002 * 109.46866 * 239.99851 * 2 1 3 34 34 H 1.09000 * 109.46609 * 119.99872 * 2 1 3 35 35 H 0.97001 * 120.00045 * 0.02562 * 3 2 1 36 36 H 1.08000 * 119.99264 * 0.03881 * 7 6 4 37 37 H 1.08003 * 119.88938 * 179.97438 * 8 7 6 38 38 H 1.09003 * 109.46763 * 270.27615 * 10 9 8 39 39 H 1.09004 * 109.47062 * 30.27051 * 10 9 8 40 40 H 1.08997 * 109.46984 * 150.27502 * 10 9 8 41 41 H 0.96991 * 120.00044 * 328.03079 * 12 11 9 42 42 H 0.97002 * 120.00077 * 0.02562 * 17 15 13 43 43 H 1.09005 * 109.47118 * 55.10572 * 20 18 17 44 44 H 1.08994 * 109.47349 * 175.10598 * 20 18 17 45 45 H 1.09005 * 109.47405 * 295.10840 * 20 18 17 46 46 H 0.97003 * 119.99940 * 355.23892 * 24 23 21 47 47 H 1.08007 * 120.11326 * 180.24953 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3435 1.6275 0.0005 5 8 4.1332 0.7036 0.0005 6 6 3.8363 3.0215 0.0011 7 6 2.9310 4.0845 0.0006 8 6 3.3932 5.3847 0.0006 9 6 4.7518 5.6403 0.0068 10 6 5.2483 7.0632 0.0131 11 6 5.6614 4.5893 0.0017 12 7 7.0339 4.8528 0.0022 13 6 7.8827 4.0046 0.6159 14 8 7.4659 2.9710 1.0968 15 6 9.3362 4.3365 0.7044 16 8 9.7530 5.3698 0.2232 17 7 10.1849 3.4886 1.3185 18 6 11.6108 3.8140 1.4048 19 1 11.7312 4.8907 1.5238 20 6 12.3157 3.3604 0.1249 21 6 12.2166 3.1067 2.5895 22 1 11.6245 2.4081 3.1621 23 6 13.5267 3.3516 2.9426 24 7 14.1704 2.5008 3.7118 25 14 14.3849 4.8953 2.3349 26 1 15.7751 4.9268 2.8562 27 1 14.4131 4.8942 0.8501 28 1 13.6490 6.0924 2.8151 29 6 5.2067 3.2789 0.0017 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.3880 2.1185 0.0004 36 1 1.8688 3.8891 0.0004 37 1 2.6912 6.2055 -0.0003 38 1 5.3674 7.4109 -1.0131 39 1 4.5278 7.6971 0.5302 40 1 6.2085 7.1106 0.5267 41 1 7.3756 5.6460 -0.4391 42 1 9.8519 2.6626 1.7028 43 1 11.8215 3.8047 -0.7392 44 1 13.3576 3.6793 0.1513 45 1 12.2702 2.2738 0.0504 46 1 13.7041 1.7375 4.0870 47 1 5.9117 2.4607 0.0017 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123125313.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:30 Heat of formation + Delta-G solvation = -82.062482 kcal Electronic energy + Delta-G solvation = -29724.648924 eV Core-core repulsion = 25486.410553 eV Total energy + Delta-G solvation = -4238.238371 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.18953 -40.13456 -39.04140 -37.98604 -35.62796 -35.57529 -34.81301 -33.04262 -32.47401 -31.04079 -30.17251 -29.78247 -27.67227 -25.32641 -24.75312 -23.80178 -22.74455 -22.44784 -20.82922 -20.53035 -19.74931 -18.92245 -18.26537 -17.26532 -16.82492 -16.50199 -15.93263 -15.85981 -15.77114 -15.49834 -15.27692 -14.66581 -14.42093 -14.23227 -14.06581 -13.89567 -13.84563 -13.44482 -13.29095 -12.93846 -12.76092 -12.72783 -12.35787 -12.27838 -12.24008 -12.02723 -11.89758 -11.86181 -11.83048 -11.52879 -11.16876 -10.68347 -10.56538 -10.15916 -10.07703 -9.86424 -9.44025 -9.30151 -9.15965 -9.02706 -8.47180 -8.39645 -8.34459 -6.63883 -4.26680 0.50150 0.98212 1.69045 2.45582 2.62635 2.84670 3.33362 3.40391 3.44530 3.55399 3.63500 3.91567 4.31161 4.37588 4.42519 4.55148 4.66539 4.67341 4.71250 4.86222 4.91212 4.96922 5.12141 5.13214 5.27236 5.32066 5.39420 5.49212 5.58268 5.59963 5.71818 5.87149 6.00863 6.06699 6.07881 6.14605 6.29422 6.41503 6.55416 6.65395 6.79515 6.89577 7.11958 7.17424 7.23518 7.48477 7.72607 7.96701 8.16503 8.24637 8.45041 8.75501 9.42318 10.77559 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015276 B = 0.002280 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.475758 B =12278.179385 C =13712.589040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.113 3.887 3 N -0.730 5.730 4 C 0.558 3.442 5 O -0.526 6.526 6 C -0.125 4.125 7 C -0.101 4.101 8 C -0.109 4.109 9 C -0.083 4.083 10 C -0.123 4.123 11 C 0.140 3.860 12 N -0.648 5.648 13 C 0.506 3.494 14 O -0.494 6.494 15 C 0.497 3.503 16 O -0.537 6.537 17 N -0.660 5.660 18 C 0.240 3.760 19 H 0.046 0.954 20 C -0.163 4.163 21 C -0.623 4.623 22 H 0.065 0.935 23 C 0.041 3.959 24 N -0.892 5.892 25 Si 1.042 2.958 26 H -0.282 1.282 27 H -0.271 1.271 28 H -0.280 1.280 29 C -0.062 4.062 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.399 0.601 36 H 0.125 0.875 37 H 0.134 0.866 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.424 0.576 42 H 0.408 0.592 43 H 0.030 0.970 44 H 0.065 0.935 45 H 0.050 0.950 46 H 0.271 0.729 47 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.798 5.209 -9.996 30.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.010 4.010 3 N -0.384 5.384 4 C 0.346 3.654 5 O -0.403 6.403 6 C -0.129 4.129 7 C -0.120 4.120 8 C -0.128 4.128 9 C -0.086 4.086 10 C -0.180 4.180 11 C 0.045 3.955 12 N -0.296 5.296 13 C 0.288 3.712 14 O -0.366 6.366 15 C 0.275 3.725 16 O -0.416 6.416 17 N -0.308 5.308 18 C 0.137 3.863 19 H 0.064 0.936 20 C -0.221 4.221 21 C -0.660 4.660 22 H 0.083 0.917 23 C -0.167 4.167 24 N -0.524 5.524 25 Si 0.870 3.130 26 H -0.207 1.207 27 H -0.197 1.197 28 H -0.206 1.206 29 C -0.083 4.083 30 H 0.094 0.906 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.234 0.766 36 H 0.143 0.857 37 H 0.151 0.849 38 H 0.096 0.904 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.263 0.737 42 H 0.243 0.757 43 H 0.049 0.951 44 H 0.084 0.916 45 H 0.069 0.931 46 H 0.081 0.919 47 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -26.627 5.246 -9.920 28.895 hybrid contribution -1.948 -0.544 0.086 2.024 sum -28.574 4.702 -9.834 30.583 Atomic orbital electron populations 1.22012 0.94354 1.03375 1.02506 1.21325 0.94208 0.82739 1.02737 1.45936 1.06900 1.09052 1.76545 1.18269 0.82171 0.88738 0.76242 1.90822 1.55243 1.45632 1.48568 1.19710 0.93893 0.92677 1.06634 1.21187 0.98838 0.92280 0.99700 1.20741 0.94101 0.96642 1.01288 1.19937 0.93066 0.95119 1.00445 1.20861 1.02454 0.91676 1.02995 1.17511 0.82725 0.93176 1.02063 1.43190 1.04216 1.27952 1.54205 1.20933 0.88457 0.83728 0.78046 1.90773 1.78050 1.23615 1.44207 1.19671 0.85823 0.85418 0.81544 1.90717 1.78009 1.25160 1.47754 1.46264 1.09795 1.22348 1.52419 1.19238 0.74436 0.97386 0.95201 0.93642 1.22521 1.01103 1.01130 0.97382 1.22039 1.00176 1.29326 1.14503 0.91697 1.25701 0.94108 1.01124 0.95751 1.70870 1.37053 1.12286 1.32230 0.84082 0.76541 0.75526 0.76893 1.20749 1.19690 1.20559 1.21559 0.95183 0.96516 0.95013 0.90647 0.91917 0.91959 0.91313 0.91260 0.76567 0.85675 0.84853 0.90384 0.90570 0.90950 0.73721 0.75711 0.95051 0.91601 0.93066 0.91902 0.82253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.67 10.03 37.16 0.37 -0.30 16 2 C 0.11 0.84 6.39 -4.04 -0.03 0.81 16 3 N -0.73 -6.07 5.51 -61.24 -0.34 -6.40 16 4 C 0.56 7.07 7.77 -12.32 -0.10 6.97 16 5 O -0.53 -9.01 16.34 5.32 0.09 -8.93 16 6 C -0.13 -1.48 5.87 -105.00 -0.62 -2.10 16 7 C -0.10 -0.81 9.54 -39.16 -0.37 -1.19 16 8 C -0.11 -0.84 9.67 -39.67 -0.38 -1.22 16 9 C -0.08 -0.79 5.90 -104.34 -0.62 -1.40 16 10 C -0.12 -0.89 9.45 36.01 0.34 -0.55 16 11 C 0.14 1.77 6.33 -83.79 -0.53 1.24 16 12 N -0.65 -8.71 4.79 -10.32 -0.05 -8.76 16 13 C 0.51 8.54 7.74 -11.63 -0.09 8.45 16 14 O -0.49 -9.30 13.70 5.48 0.08 -9.22 16 15 C 0.50 9.60 7.85 -11.63 -0.09 9.50 16 16 O -0.54 -11.01 16.14 5.49 0.09 -10.92 16 17 N -0.66 -13.95 5.06 -55.40 -0.28 -14.23 16 18 C 0.24 5.73 2.15 -69.08 -0.15 5.58 16 19 H 0.05 1.14 6.21 -51.93 -0.32 0.82 16 20 C -0.16 -3.63 9.16 37.16 0.34 -3.29 16 21 C -0.62 -16.89 8.99 -34.44 -0.31 -17.20 16 22 H 0.06 1.87 7.96 -52.48 -0.42 1.45 16 23 C 0.04 1.13 5.33 -17.82 -0.09 1.04 16 24 N -0.89 -26.46 13.70 55.43 0.76 -25.70 16 25 Si 1.04 24.53 26.46 -169.99 -4.50 20.03 16 26 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 27 H -0.27 -5.90 5.58 56.52 0.32 -5.58 16 28 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 29 C -0.06 -0.88 8.27 -38.96 -0.32 -1.20 16 30 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.06 0.21 8.14 -51.92 -0.42 -0.21 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.40 2.04 6.50 -40.82 -0.27 1.77 16 36 H 0.13 0.56 6.40 -52.49 -0.34 0.23 16 37 H 0.13 0.62 8.06 -52.48 -0.42 0.20 16 38 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.08 0.43 8.09 -51.93 -0.42 0.01 16 40 H 0.07 0.59 7.10 -51.93 -0.37 0.23 16 41 H 0.42 4.89 7.18 -40.82 -0.29 4.60 16 42 H 0.41 8.35 8.00 -40.82 -0.33 8.03 16 43 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.07 1.47 4.93 -51.93 -0.26 1.22 16 45 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 46 H 0.27 7.99 8.73 -40.82 -0.36 7.64 16 47 H 0.16 2.76 5.55 -52.48 -0.29 2.46 16 LS Contribution 391.78 15.07 5.90 5.90 Total: -1.00 -34.31 391.78 -7.24 -41.54 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: -6.34 Total: 11.53 kcal Atomic # 6 Polarization: 7.80 SS G_CDS: -2.64 Total: 5.15 kcal Atomic # 7 Polarization: -55.19 SS G_CDS: 0.09 Total: -55.09 kcal Atomic # 8 Polarization: -29.32 SS G_CDS: 0.25 Total: -29.07 kcal Atomic # 14 Polarization: 24.53 SS G_CDS: -4.50 Total: 20.03 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.31 -7.24 -41.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123125313.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.521 kcal (2) G-P(sol) polarization free energy of solvation -34.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds