Wall clock time and date at job start Wed Apr 1 2020 04:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46502 * 109.47030 * 2 1 4 4 C 1.34779 * 119.99854 * 179.97438 * 3 2 1 5 5 O 1.21547 * 119.99590 * 0.02562 * 4 3 2 6 6 C 1.47855 * 119.99915 * 180.02562 * 4 3 2 7 7 C 1.39628 * 120.11058 * 359.97438 * 6 4 3 8 8 C 1.37985 * 120.00963 * 180.02562 * 7 6 4 9 9 C 1.38242 * 120.22897 * 359.72458 * 8 7 6 10 10 C 1.50700 * 119.89324 * 180.27809 * 9 8 7 11 11 C 1.39003 * 120.21508 * 0.54825 * 9 8 7 12 12 N 1.39757 * 120.00422 * 179.72316 * 11 9 8 13 13 C 1.34780 * 119.99655 * 148.03738 * 12 11 9 14 14 O 1.21375 * 120.00334 * 4.51940 * 13 12 11 15 15 C 1.49354 * 119.99774 * 184.52411 * 13 12 11 16 16 O 1.21362 * 119.99949 * 359.97438 * 15 13 12 17 17 N 1.34773 * 120.00238 * 179.97438 * 15 13 12 18 18 C 1.46504 * 120.00227 * 179.97438 * 17 15 13 19 19 H 1.09000 * 109.47039 * 35.00032 * 18 17 15 20 20 C 1.52998 * 109.47126 * 275.00179 * 18 17 15 21 21 C 1.50696 * 109.47159 * 155.00232 * 18 17 15 22 22 H 1.08004 * 119.99563 * 5.57310 * 21 18 17 23 23 C 1.37874 * 119.99969 * 185.57783 * 21 18 17 24 24 N 1.31516 * 119.99797 * 198.76199 * 23 21 18 25 25 Si 1.86794 * 120.00115 * 19.03753 * 23 21 18 26 26 H 1.48502 * 109.47301 * 179.72700 * 25 23 21 27 27 H 1.48499 * 109.47185 * 299.72635 * 25 23 21 28 28 H 1.48500 * 109.47006 * 59.72805 * 25 23 21 29 29 C 1.38698 * 119.98733 * 359.45423 * 11 9 8 30 30 H 1.09002 * 109.47279 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47331 * 299.99891 * 1 2 3 32 32 H 1.09007 * 109.46773 * 59.99804 * 1 2 3 33 33 H 1.09002 * 109.46866 * 239.99851 * 2 1 3 34 34 H 1.09000 * 109.46609 * 119.99872 * 2 1 3 35 35 H 0.97001 * 120.00045 * 0.02562 * 3 2 1 36 36 H 1.08000 * 119.99264 * 0.03881 * 7 6 4 37 37 H 1.08003 * 119.88938 * 179.97438 * 8 7 6 38 38 H 1.09003 * 109.46763 * 270.27615 * 10 9 8 39 39 H 1.09004 * 109.47062 * 30.27051 * 10 9 8 40 40 H 1.08997 * 109.46984 * 150.27502 * 10 9 8 41 41 H 0.96991 * 120.00044 * 328.03079 * 12 11 9 42 42 H 0.97002 * 120.00077 * 0.02562 * 17 15 13 43 43 H 1.09005 * 109.47118 * 55.10572 * 20 18 17 44 44 H 1.08994 * 109.47349 * 175.10598 * 20 18 17 45 45 H 1.09005 * 109.47405 * 295.10840 * 20 18 17 46 46 H 0.97003 * 119.99940 * 355.23892 * 24 23 21 47 47 H 1.08007 * 120.11326 * 180.24953 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3435 1.6275 0.0005 5 8 4.1332 0.7036 0.0005 6 6 3.8363 3.0215 0.0011 7 6 2.9310 4.0845 0.0006 8 6 3.3932 5.3847 0.0006 9 6 4.7518 5.6403 0.0068 10 6 5.2483 7.0632 0.0131 11 6 5.6614 4.5893 0.0017 12 7 7.0339 4.8528 0.0022 13 6 7.8827 4.0046 0.6159 14 8 7.4659 2.9710 1.0968 15 6 9.3362 4.3365 0.7044 16 8 9.7530 5.3698 0.2232 17 7 10.1849 3.4886 1.3185 18 6 11.6108 3.8140 1.4048 19 1 11.7312 4.8907 1.5238 20 6 12.3157 3.3604 0.1249 21 6 12.2166 3.1067 2.5895 22 1 11.6245 2.4081 3.1621 23 6 13.5267 3.3516 2.9426 24 7 14.1704 2.5008 3.7118 25 14 14.3849 4.8953 2.3349 26 1 15.7751 4.9268 2.8562 27 1 14.4131 4.8942 0.8501 28 1 13.6490 6.0924 2.8151 29 6 5.2067 3.2789 0.0017 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.3880 2.1185 0.0004 36 1 1.8688 3.8891 0.0004 37 1 2.6912 6.2055 -0.0003 38 1 5.3674 7.4109 -1.0131 39 1 4.5278 7.6971 0.5302 40 1 6.2085 7.1106 0.5267 41 1 7.3756 5.6460 -0.4391 42 1 9.8519 2.6626 1.7028 43 1 11.8215 3.8047 -0.7392 44 1 13.3576 3.6793 0.1513 45 1 12.2702 2.2738 0.0504 46 1 13.7041 1.7375 4.0870 47 1 5.9117 2.4607 0.0017 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123125313.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:29 Heat of formation + Delta-G solvation = -108.966040 kcal Electronic energy + Delta-G solvation = -29725.815550 eV Core-core repulsion = 25486.410553 eV Total energy + Delta-G solvation = -4239.404997 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.36030 -41.23173 -40.28136 -39.21923 -37.20035 -36.45528 -36.10283 -34.53076 -33.81021 -31.85784 -31.62713 -30.88352 -28.38191 -27.04288 -26.38758 -24.54039 -23.78192 -23.18652 -22.31362 -21.53669 -21.38502 -20.35532 -19.50246 -18.92267 -18.05634 -17.46861 -17.21116 -17.11161 -16.68400 -16.60958 -16.29167 -15.83237 -15.77699 -15.21819 -15.11847 -15.01982 -14.87966 -14.71778 -14.59340 -14.54730 -14.26298 -13.61807 -13.48861 -13.43455 -13.29959 -13.08873 -12.92347 -12.79633 -12.64832 -12.46756 -12.41068 -12.32339 -11.98707 -11.74059 -11.66925 -11.20427 -11.14871 -10.76501 -10.49214 -10.27130 -10.21896 -9.82824 -9.33367 -8.87059 -6.50583 -0.36008 -0.03580 0.47478 1.16926 1.45768 1.52497 1.69406 1.71750 2.00791 2.07264 2.41749 2.57105 2.75286 2.96896 3.29715 3.58305 3.75547 3.89554 4.01722 4.12350 4.19262 4.20387 4.31620 4.39528 4.49365 4.62978 4.64493 4.66845 4.77069 4.81082 4.89476 4.96052 5.03825 5.06633 5.13782 5.19972 5.23753 5.25361 5.26550 5.34534 5.37381 5.40403 5.50241 5.80405 5.84873 5.93941 6.36273 6.42892 6.45565 6.60779 6.86370 7.12569 7.26752 8.53217 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015276 B = 0.002280 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.475758 B =12278.179385 C =13712.589040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.107 3.893 3 N -0.708 5.708 4 C 0.551 3.449 5 O -0.588 6.588 6 C -0.144 4.144 7 C -0.077 4.077 8 C -0.098 4.098 9 C -0.071 4.071 10 C -0.125 4.125 11 C 0.110 3.890 12 N -0.628 5.628 13 C 0.510 3.490 14 O -0.521 6.521 15 C 0.502 3.498 16 O -0.545 6.545 17 N -0.670 5.670 18 C 0.243 3.757 19 H 0.042 0.958 20 C -0.156 4.156 21 C -0.624 4.624 22 H 0.033 0.967 23 C -0.006 4.006 24 N -0.921 5.921 25 Si 1.077 2.923 26 H -0.282 1.282 27 H -0.240 1.240 28 H -0.267 1.267 29 C -0.091 4.091 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.056 0.944 34 H 0.052 0.948 35 H 0.418 0.582 36 H 0.170 0.830 37 H 0.181 0.819 38 H 0.097 0.903 39 H 0.102 0.898 40 H 0.058 0.942 41 H 0.433 0.567 42 H 0.408 0.592 43 H 0.048 0.952 44 H 0.067 0.933 45 H 0.046 0.954 46 H 0.256 0.744 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.509 8.756 -11.616 35.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.016 4.016 3 N -0.361 5.361 4 C 0.339 3.661 5 O -0.469 6.469 6 C -0.148 4.148 7 C -0.096 4.096 8 C -0.116 4.116 9 C -0.073 4.073 10 C -0.181 4.181 11 C 0.016 3.984 12 N -0.276 5.276 13 C 0.292 3.708 14 O -0.396 6.396 15 C 0.282 3.718 16 O -0.424 6.424 17 N -0.319 5.319 18 C 0.139 3.861 19 H 0.060 0.940 20 C -0.215 4.215 21 C -0.661 4.661 22 H 0.052 0.948 23 C -0.207 4.207 24 N -0.555 5.555 25 Si 0.898 3.102 26 H -0.207 1.207 27 H -0.164 1.164 28 H -0.192 1.192 29 C -0.112 4.112 30 H 0.102 0.898 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.257 0.743 36 H 0.187 0.813 37 H 0.199 0.801 38 H 0.115 0.885 39 H 0.120 0.880 40 H 0.077 0.923 41 H 0.274 0.726 42 H 0.243 0.757 43 H 0.067 0.933 44 H 0.086 0.914 45 H 0.065 0.935 46 H 0.066 0.934 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -30.449 8.836 -11.574 33.751 hybrid contribution -1.020 -1.642 0.589 2.021 sum -31.469 7.194 -10.985 34.099 Atomic orbital electron populations 1.21961 0.91017 1.04422 1.03707 1.21450 0.96789 0.81964 1.01401 1.45812 1.05698 1.10245 1.74376 1.18616 0.83101 0.88729 0.75633 1.90789 1.57003 1.47352 1.51729 1.19745 0.93547 0.93301 1.08212 1.21660 1.00283 0.91312 0.96322 1.21306 0.93809 0.97662 0.98863 1.20327 0.93480 0.95338 0.98204 1.20976 1.02431 0.90302 1.04380 1.17683 0.82295 0.93613 1.04774 1.42976 1.04611 1.27162 1.52826 1.20385 0.87605 0.84034 0.78768 1.90792 1.78103 1.24807 1.45915 1.19966 0.86757 0.84654 0.80467 1.90694 1.78579 1.25297 1.47842 1.46129 1.09264 1.22951 1.53562 1.19021 0.75953 0.96550 0.94566 0.94009 1.22410 1.01073 1.00999 0.96996 1.22186 1.00152 1.28537 1.15274 0.94825 1.27062 0.95316 1.02959 0.95325 1.70989 1.37460 1.12889 1.34174 0.83668 0.75650 0.72421 0.78496 1.20737 1.16431 1.19193 1.21332 0.95980 0.96240 0.97661 0.89768 0.90787 0.90542 0.92565 0.92947 0.74325 0.81262 0.80148 0.88487 0.87976 0.92325 0.72623 0.75727 0.93301 0.91444 0.93452 0.93421 0.86603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 10.03 71.98 0.72 -0.14 16 2 C 0.11 1.55 6.39 86.38 0.55 2.10 16 3 N -0.71 -10.87 5.51 -465.95 -2.57 -13.44 16 4 C 0.55 14.33 7.77 86.79 0.67 15.01 16 5 O -0.59 -21.94 16.34 -3.86 -0.06 -22.00 16 6 C -0.14 -3.34 5.87 -20.11 -0.12 -3.46 16 7 C -0.08 -0.93 9.54 22.55 0.22 -0.72 16 8 C -0.10 -1.00 9.67 22.21 0.21 -0.78 16 9 C -0.07 -1.12 5.90 -19.68 -0.12 -1.24 16 10 C -0.12 -1.29 9.45 71.24 0.67 -0.62 16 11 C 0.11 2.73 6.33 38.17 0.24 2.97 16 12 N -0.63 -16.95 4.79 -304.93 -1.46 -18.42 16 13 C 0.51 17.89 7.74 87.24 0.68 18.57 16 14 O -0.52 -21.08 13.70 -3.32 -0.05 -21.13 16 15 C 0.50 19.67 7.85 87.24 0.68 20.35 16 16 O -0.54 -21.99 16.14 -3.28 -0.05 -22.04 16 17 N -0.67 -29.18 5.06 -447.53 -2.27 -31.45 16 18 C 0.24 11.66 2.15 44.24 0.09 11.75 16 19 H 0.04 2.06 6.21 -2.39 -0.01 2.05 16 20 C -0.16 -6.86 9.16 71.98 0.66 -6.20 16 21 C -0.62 -34.88 8.99 25.60 0.23 -34.65 16 22 H 0.03 2.04 7.96 -2.91 -0.02 2.02 16 23 C -0.01 -0.32 5.33 84.65 0.45 0.13 16 24 N -0.92 -56.31 13.70 21.45 0.29 -56.01 16 25 Si 1.08 48.84 26.46 68.60 1.82 50.66 16 26 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 27 H -0.24 -9.66 5.58 99.48 0.55 -9.11 16 28 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 29 C -0.09 -2.72 8.27 22.67 0.19 -2.53 16 30 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.07 0.29 8.14 -2.39 -0.02 0.27 16 32 H 0.08 0.25 8.14 -2.38 -0.02 0.23 16 33 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.42 2.84 6.50 -92.71 -0.60 2.24 16 36 H 0.17 0.49 6.40 -2.91 -0.02 0.47 16 37 H 0.18 0.28 8.06 -2.91 -0.02 0.25 16 38 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.10 0.58 8.09 -2.38 -0.02 0.56 16 40 H 0.06 0.80 7.10 -2.39 -0.02 0.79 16 41 H 0.43 9.66 7.18 -92.71 -0.67 9.00 16 42 H 0.41 17.72 8.00 -92.71 -0.74 16.98 16 43 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 44 H 0.07 2.91 4.93 -2.39 -0.01 2.89 16 45 H 0.05 2.07 8.14 -2.38 -0.02 2.05 16 46 H 0.26 15.91 8.73 -92.71 -0.81 15.10 16 47 H 0.12 4.48 5.55 -2.91 -0.02 4.47 16 Total: -1.00 -81.56 391.78 0.55 -81.01 By element: Atomic # 1 Polarization: 33.42 SS G_CDS: -1.15 Total: 32.27 kcal Atomic # 6 Polarization: 14.51 SS G_CDS: 6.04 Total: 20.55 kcal Atomic # 7 Polarization: -113.32 SS G_CDS: -6.00 Total: -119.31 kcal Atomic # 8 Polarization: -65.01 SS G_CDS: -0.16 Total: -65.17 kcal Atomic # 14 Polarization: 48.84 SS G_CDS: 1.82 Total: 50.66 kcal Total: -81.56 0.55 -81.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123125313.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.957 kcal (2) G-P(sol) polarization free energy of solvation -81.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds