Wall clock time and date at job start Wed Apr 1 2020 05:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21282 * 119.99540 * 2 1 4 4 N 1.34771 * 120.00467 * 180.02562 * 2 1 3 5 5 C 1.46494 * 120.00261 * 179.97438 * 4 2 1 6 6 C 1.50707 * 109.47364 * 180.02562 * 5 4 2 7 7 O 1.21280 * 119.99582 * 359.97438 * 6 5 4 8 8 N 1.34772 * 120.00096 * 180.02562 * 6 5 4 9 9 C 1.46505 * 119.99830 * 179.97438 * 8 6 5 10 10 C 1.50697 * 109.47018 * 179.97438 * 9 8 6 11 11 O 1.21290 * 120.00067 * 359.97438 * 10 9 8 12 12 N 1.34771 * 120.00181 * 180.02562 * 10 9 8 13 13 C 1.46500 * 120.00556 * 180.02562 * 12 10 9 14 14 H 1.09009 * 109.46624 * 324.99750 * 13 12 10 15 15 C 1.52996 * 109.47466 * 205.00158 * 13 12 10 16 16 C 1.50702 * 109.47159 * 64.99479 * 15 13 12 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 15 13 18 18 C 1.37884 * 119.99942 * 179.72211 * 16 15 13 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 15 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 15 21 21 H 1.48504 * 109.47196 * 60.00645 * 20 18 16 22 22 H 1.48504 * 109.46887 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47679 * 300.00280 * 20 18 16 24 24 C 1.50700 * 109.47471 * 84.99708 * 13 12 10 25 25 C 1.38233 * 119.99377 * 39.72808 * 24 13 12 26 26 C 1.38237 * 119.99600 * 179.78842 * 25 24 13 27 27 C 1.38241 * 119.99990 * 0.44354 * 26 25 24 28 28 C 1.38237 * 119.99716 * 359.81238 * 27 26 25 29 29 C 1.38228 * 120.00326 * 220.00479 * 24 13 12 30 30 H 1.09003 * 109.46548 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47134 * 299.99395 * 1 2 3 32 32 H 1.09003 * 109.47291 * 60.00170 * 1 2 3 33 33 H 0.97002 * 120.00072 * 359.97438 * 4 2 1 34 34 H 1.08993 * 109.47178 * 60.00158 * 5 4 2 35 35 H 1.09000 * 109.47199 * 299.99636 * 5 4 2 36 36 H 0.97000 * 120.00074 * 359.97438 * 8 6 5 37 37 H 1.09003 * 109.47021 * 60.00188 * 9 8 6 38 38 H 1.08995 * 109.47163 * 300.00202 * 9 8 6 39 39 H 0.97002 * 120.00072 * 359.97438 * 12 10 9 40 40 H 1.09004 * 109.47066 * 304.99682 * 15 13 12 41 41 H 1.08994 * 109.47405 * 184.99512 * 15 13 12 42 42 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 43 43 H 1.07995 * 120.00514 * 359.97438 * 25 24 13 44 44 H 1.08001 * 120.00058 * 180.28006 * 26 25 24 45 45 H 1.07995 * 120.00194 * 179.83256 * 27 26 25 46 46 H 1.08001 * 119.99824 * 180.02562 * 28 27 26 47 47 H 1.08005 * 119.99906 * 359.97438 * 29 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1810 -1.1671 -0.0005 5 6 3.6459 -1.1670 -0.0011 6 6 4.1484 -2.5879 -0.0022 7 8 3.3603 -3.5097 -0.0021 8 7 5.4734 -2.8341 -0.0024 9 6 5.9618 -4.2153 -0.0029 10 6 7.4688 -4.2152 -0.0036 11 8 8.0752 -3.1648 -0.0042 12 7 8.1427 -5.3823 -0.0048 13 6 9.6077 -5.3824 -0.0049 14 1 9.9710 -4.5400 -0.5937 15 6 10.1177 -6.6891 -0.6157 16 6 9.7189 -6.7543 -2.0675 17 1 9.1581 -5.9444 -2.5104 18 6 10.0753 -7.8449 -2.8321 19 7 10.7585 -8.8309 -2.2929 20 14 9.5875 -7.9221 -4.6336 21 1 10.1799 -6.7682 -5.3568 22 1 10.0867 -9.1883 -5.2277 23 1 8.1078 -7.8716 -4.7485 24 6 10.1103 -5.2597 1.4106 25 6 9.4727 -5.9393 2.4316 26 6 9.9363 -5.8304 3.7293 27 6 11.0319 -5.0345 4.0074 28 6 11.6662 -4.3508 2.9870 29 6 11.2052 -4.4632 1.6887 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.6960 -2.0072 -0.0005 34 1 4.0096 -0.6535 0.8888 35 1 4.0089 -0.6531 -0.8911 36 1 6.1037 -2.0968 -0.0021 37 1 5.5985 -4.7288 -0.8931 38 1 5.5985 -4.7295 0.8868 39 1 7.6578 -6.2224 -0.0047 40 1 9.6832 -7.5339 -0.0813 41 1 11.2040 -6.7282 -0.5353 42 1 11.0089 -9.5984 -2.8308 43 1 8.6142 -6.5578 2.2150 44 1 9.4409 -6.3649 4.5264 45 1 11.3924 -4.9472 5.0216 46 1 12.5224 -3.7293 3.2042 47 1 11.7009 -3.9291 0.8916 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153399622.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:53 Heat of formation + Delta-G solvation = -118.881509 kcal Electronic energy + Delta-G solvation = -29343.376081 eV Core-core repulsion = 25103.541118 eV Total energy + Delta-G solvation = -4239.834964 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.53470 -40.96497 -40.18624 -39.62162 -36.93757 -35.75982 -35.41321 -34.74689 -32.77678 -31.71336 -31.52172 -30.60039 -29.54511 -27.37744 -26.30805 -23.79901 -23.39000 -22.10929 -21.72102 -21.65347 -21.21164 -19.28809 -18.65585 -17.95951 -17.76761 -17.62095 -17.27924 -17.05149 -16.82545 -16.54700 -16.42614 -16.09526 -16.03397 -15.62032 -15.22998 -14.81066 -14.58712 -14.41091 -14.25162 -14.18507 -14.04244 -13.99073 -13.67724 -13.45699 -13.42988 -13.29331 -12.92051 -12.90362 -12.65700 -12.45414 -12.15740 -11.87691 -11.59898 -11.35170 -11.28434 -11.10858 -11.02451 -10.57398 -10.41758 -10.23913 -10.02874 -9.75288 -9.52603 -8.20186 -6.30205 0.50630 0.56327 1.35487 1.40948 1.42218 1.49664 1.55117 1.57998 1.59524 2.24509 2.39818 2.54047 2.97224 3.14421 3.47864 3.71034 3.94786 3.99124 4.03968 4.21258 4.22586 4.32371 4.33492 4.33595 4.35982 4.44706 4.53188 4.65546 4.68578 4.75678 4.79177 5.05744 5.08497 5.12900 5.20312 5.24027 5.25834 5.43466 5.58599 5.61535 5.65027 5.78028 5.88216 6.15577 6.20145 6.28051 6.47140 6.57322 6.82787 6.94219 7.16039 7.20160 7.38925 8.90109 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008250 B = 0.002578 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3393.137927 B =10857.981856 C =13517.762814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.508 3.492 3 O -0.597 6.597 4 N -0.714 5.714 5 C 0.101 3.899 6 C 0.519 3.481 7 O -0.564 6.564 8 N -0.706 5.706 9 C 0.108 3.892 10 C 0.508 3.492 11 O -0.576 6.576 12 N -0.690 5.690 13 C 0.202 3.798 14 H 0.063 0.937 15 C 0.036 3.964 16 C -0.529 4.529 17 H 0.056 0.944 18 C 0.011 3.989 19 N -0.925 5.925 20 Si 0.954 3.046 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.265 1.265 24 C -0.099 4.099 25 C -0.121 4.121 26 C -0.126 4.126 27 C -0.130 4.130 28 C -0.125 4.125 29 C -0.131 4.131 30 H 0.100 0.900 31 H 0.106 0.894 32 H 0.105 0.895 33 H 0.419 0.581 34 H 0.109 0.891 35 H 0.107 0.893 36 H 0.418 0.582 37 H 0.109 0.891 38 H 0.117 0.883 39 H 0.412 0.588 40 H 0.013 0.987 41 H 0.003 0.997 42 H 0.263 0.737 43 H 0.124 0.876 44 H 0.145 0.855 45 H 0.149 0.851 46 H 0.142 0.858 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.691 10.652 10.403 20.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.298 3.702 3 O -0.478 6.478 4 N -0.370 5.370 5 C -0.027 4.027 6 C 0.306 3.694 7 O -0.444 6.444 8 N -0.361 5.361 9 C -0.019 4.019 10 C 0.294 3.706 11 O -0.456 6.456 12 N -0.340 5.340 13 C 0.097 3.903 14 H 0.081 0.919 15 C -0.001 4.001 16 C -0.567 4.567 17 H 0.074 0.926 18 C -0.188 4.188 19 N -0.565 5.565 20 Si 0.780 3.220 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.190 1.190 24 C -0.100 4.100 25 C -0.139 4.139 26 C -0.143 4.143 27 C -0.148 4.148 28 C -0.142 4.142 29 C -0.150 4.150 30 H 0.119 0.881 31 H 0.124 0.876 32 H 0.123 0.877 33 H 0.258 0.742 34 H 0.127 0.873 35 H 0.125 0.875 36 H 0.257 0.743 37 H 0.127 0.873 38 H 0.135 0.865 39 H 0.248 0.752 40 H 0.032 0.968 41 H 0.022 0.978 42 H 0.072 0.928 43 H 0.141 0.859 44 H 0.163 0.837 45 H 0.167 0.833 46 H 0.160 0.840 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -14.292 11.261 10.347 20.932 hybrid contribution 0.373 -0.874 -1.290 1.603 sum -13.919 10.386 9.057 19.587 Atomic orbital electron populations 1.21873 0.87714 1.06323 1.06277 1.21608 0.92398 0.82198 0.74033 1.90723 1.71994 1.32929 1.52154 1.45927 1.05783 1.10305 1.74971 1.21038 0.82929 0.92774 1.05936 1.20625 0.81924 0.91553 0.75347 1.90699 1.55617 1.46700 1.51339 1.45585 1.07277 1.08871 1.74358 1.21074 0.89431 0.85197 1.06214 1.20782 0.90385 0.83824 0.75560 1.90656 1.70744 1.32123 1.52087 1.45769 1.06880 1.08714 1.72614 1.19735 0.79465 0.99687 0.91368 0.91893 1.19144 0.95413 0.90813 0.94735 1.21378 1.35161 1.04179 0.95952 0.92555 1.25769 0.95046 0.95467 1.02535 1.70061 1.39433 1.09031 1.37989 0.85670 0.79055 0.77135 0.80180 1.20126 1.21161 1.19013 1.20426 0.96605 0.97234 0.95703 1.21091 1.00423 0.99363 0.93028 1.21443 0.97299 0.99183 0.96407 1.21469 0.96095 0.97076 1.00122 1.21384 1.00532 1.00131 0.92198 1.21172 0.96933 0.99056 0.97827 0.88070 0.87566 0.87681 0.74220 0.87269 0.87535 0.74345 0.87320 0.86486 0.75168 0.96827 0.97822 0.92779 0.85851 0.83714 0.83334 0.83999 0.86827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.34 10.39 71.24 0.74 -0.60 16 2 C 0.51 8.93 7.94 87.66 0.70 9.63 16 3 O -0.60 -15.94 17.10 -3.04 -0.05 -15.99 16 4 N -0.71 -11.47 5.53 -466.80 -2.58 -14.05 16 5 C 0.10 1.71 6.15 85.64 0.53 2.24 16 6 C 0.52 10.55 7.90 87.66 0.69 11.24 16 7 O -0.56 -14.07 15.67 -3.03 -0.05 -14.12 16 8 N -0.71 -14.82 5.53 -466.78 -2.58 -17.40 16 9 C 0.11 2.44 6.15 85.63 0.53 2.97 16 10 C 0.51 15.32 7.86 87.66 0.69 16.01 16 11 O -0.58 -20.78 15.33 -3.06 -0.05 -20.82 16 12 N -0.69 -22.40 4.02 -446.09 -1.79 -24.19 16 13 C 0.20 7.93 2.12 44.24 0.09 8.03 16 14 H 0.06 2.76 7.44 -2.38 -0.02 2.74 16 15 C 0.04 1.73 4.50 29.85 0.13 1.87 16 16 C -0.53 -27.42 8.84 25.60 0.23 -27.19 16 17 H 0.06 2.88 7.74 -2.91 -0.02 2.85 16 18 C 0.01 0.57 5.46 84.66 0.46 1.04 16 19 N -0.93 -52.83 13.29 21.45 0.28 -52.54 16 20 Si 0.95 42.30 29.54 68.60 2.03 44.33 16 21 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 22 H -0.29 -12.56 7.11 99.48 0.71 -11.86 16 23 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 24 C -0.10 -3.49 4.91 -19.87 -0.10 -3.59 16 25 C -0.12 -3.72 9.33 22.27 0.21 -3.51 16 26 C -0.13 -3.22 10.05 22.27 0.22 -2.99 16 27 C -0.13 -3.13 10.05 22.27 0.22 -2.91 16 28 C -0.12 -3.37 10.05 22.27 0.22 -3.15 16 29 C -0.13 -4.39 9.67 22.27 0.22 -4.17 16 30 H 0.10 0.38 7.91 -2.39 -0.02 0.36 16 31 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.42 5.86 7.27 -92.71 -0.67 5.18 16 34 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.42 8.67 7.44 -92.71 -0.69 7.98 16 37 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 38 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.41 12.03 8.60 -92.71 -0.80 11.23 16 40 H 0.01 0.67 8.14 -2.38 -0.02 0.65 16 41 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 42 H 0.26 14.33 8.31 -92.70 -0.77 13.56 16 43 H 0.12 3.49 7.71 -2.91 -0.02 3.47 16 44 H 0.15 2.80 8.06 -2.91 -0.02 2.78 16 45 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 46 H 0.14 3.01 8.06 -2.91 -0.02 2.99 16 47 H 0.11 3.78 8.04 -2.91 -0.02 3.76 16 Total: -1.00 -73.85 408.44 -0.15 -74.00 By element: Atomic # 1 Polarization: 37.05 SS G_CDS: -1.14 Total: 35.91 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: 5.78 Total: 4.90 kcal Atomic # 7 Polarization: -101.52 SS G_CDS: -6.67 Total: -108.19 kcal Atomic # 8 Polarization: -50.79 SS G_CDS: -0.15 Total: -50.94 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.33 kcal Total: -73.85 -0.15 -74.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153399622.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.883 kcal (2) G-P(sol) polarization free energy of solvation -73.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds