Wall clock time and date at job start Wed Apr 1 2020 05:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.35950 * 119.24948 * 2 1 4 4 C 1.38344 * 119.27459 * 179.97438 * 3 2 1 5 5 C 1.46559 * 120.97660 * 180.02562 * 4 3 2 6 6 C 1.35307 * 120.00413 * 246.92190 * 5 4 3 7 7 C 1.41631 * 119.99823 * 6.60858 * 6 5 4 8 8 O 1.21768 * 120.00098 * 3.78853 * 7 6 5 9 9 N 1.34775 * 120.00158 * 183.79756 * 7 6 5 10 10 C 1.46921 * 120.63055 * 354.51791 * 9 7 6 11 11 C 1.53630 * 108.54439 * 126.36834 * 10 9 7 12 12 C 1.53046 * 109.23881 * 54.85738 * 11 10 9 13 13 C 1.50694 * 109.45052 * 178.49853 * 12 11 10 14 14 H 1.07996 * 120.00150 * 120.05866 * 13 12 11 15 15 C 1.37885 * 119.99931 * 300.06431 * 13 12 11 16 16 N 1.31515 * 119.99914 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 120.00122 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47094 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.47219 * 119.99793 * 17 15 13 20 20 H 1.48498 * 109.47358 * 239.99884 * 17 15 13 21 21 C 1.53038 * 109.53773 * 298.51235 * 12 11 10 22 22 C 1.46923 * 120.62971 * 174.80295 * 9 7 6 23 23 C 1.47338 * 118.04581 * 0.02562 * 4 3 2 24 24 O 1.21675 * 120.74060 * 180.02562 * 23 4 3 25 25 N 1.34964 * 118.52050 * 359.97438 * 23 4 3 26 26 C 1.46493 * 119.76304 * 180.02562 * 25 23 4 27 27 C 1.34219 * 119.24658 * 179.73095 * 2 1 3 28 28 O 1.21563 * 118.90943 * 0.02562 * 27 2 1 29 29 H 1.08998 * 109.46624 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.46874 * 240.00184 * 1 2 3 31 31 H 1.09001 * 109.47068 * 119.99886 * 1 2 3 32 32 H 1.07996 * 120.36475 * 359.96203 * 3 2 1 33 33 H 1.08004 * 119.99717 * 66.92429 * 5 4 3 34 34 H 1.07996 * 120.00495 * 186.60214 * 6 5 4 35 35 H 1.08991 * 109.59112 * 246.20678 * 10 9 7 36 36 H 1.09004 * 109.58828 * 6.63034 * 10 9 7 37 37 H 1.08995 * 109.63479 * 294.86937 * 11 10 9 38 38 H 1.08996 * 109.43375 * 174.72475 * 11 10 9 39 39 H 1.09003 * 109.45469 * 58.52836 * 12 11 10 40 40 H 0.96998 * 120.00252 * 180.02562 * 16 15 13 41 41 H 1.08991 * 109.50004 * 301.41203 * 21 12 11 42 42 H 1.09003 * 109.49919 * 181.31335 * 21 12 11 43 43 H 1.09000 * 109.59396 * 353.36923 * 22 9 7 44 44 H 1.08995 * 109.58887 * 113.65674 * 22 9 7 45 45 H 1.09002 * 109.47578 * 0.02562 * 26 25 23 46 46 H 1.08999 * 109.47101 * 120.00259 * 26 25 23 47 47 H 1.09000 * 109.47327 * 239.99636 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1293 1.1862 0.0000 4 6 3.5128 1.1868 0.0005 5 6 4.2665 2.4437 0.0011 6 6 5.0088 2.7880 -1.0765 7 6 4.9483 2.0073 -2.2567 8 8 4.1774 1.0673 -2.3261 9 7 5.7441 2.3048 -3.3030 10 6 6.5919 3.5045 -3.2813 11 6 8.0399 3.0850 -3.5772 12 6 8.0809 2.3106 -4.8967 13 6 9.5045 1.9286 -5.2102 14 1 9.7744 0.8878 -5.3119 15 6 10.4625 2.9078 -5.3672 16 7 10.1337 4.1751 -5.2437 17 14 12.2273 2.4342 -5.7551 18 1 12.3356 0.9557 -5.8412 19 1 12.6278 3.0367 -7.0520 20 1 13.1216 2.9338 -4.6801 21 6 7.2287 1.0454 -4.7742 22 6 5.7757 1.4388 -4.4894 23 6 4.2061 -0.1133 0.0005 24 8 5.4215 -0.1700 0.0014 25 7 3.4630 -1.2399 0.0005 26 6 4.1241 -2.5472 0.0010 27 6 2.1208 -1.1711 0.0055 28 8 1.4794 -2.2037 0.0099 29 1 -0.3632 1.0277 0.0005 30 1 -0.3633 -0.5138 0.8900 31 1 -0.3633 -0.5138 -0.8900 32 1 1.5830 2.1178 -0.0006 33 1 4.2295 3.0951 0.8618 34 1 5.6474 3.6580 -1.0368 35 1 6.2498 4.2075 -4.0407 36 1 6.5391 3.9716 -2.2978 37 1 8.4094 2.4508 -2.7715 38 1 8.6657 3.9738 -3.6575 39 1 7.6881 2.9369 -5.6976 40 1 10.8075 4.8640 -5.3545 41 1 7.6058 0.4304 -3.9572 42 1 7.2771 0.4824 -5.7063 43 1 5.1842 0.5424 -4.3035 44 1 5.3660 1.9759 -5.3448 45 1 5.2052 -2.4077 0.0019 46 1 3.8292 -3.1031 0.8910 47 1 3.8299 -3.1036 -0.8889 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492495618.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:37:18 Heat of formation + Delta-G solvation = -34.432038 kcal Electronic energy + Delta-G solvation = -31527.212680 eV Core-core repulsion = 27291.039720 eV Total energy + Delta-G solvation = -4236.172960 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.20727 -39.93064 -38.90520 -37.50016 -36.79813 -35.21140 -34.06627 -33.49708 -31.53264 -30.44145 -29.89549 -28.32036 -27.04171 -26.28266 -24.53275 -23.61353 -23.07104 -22.42577 -21.44499 -19.50020 -19.17953 -18.34153 -17.60162 -17.34596 -17.09226 -16.65838 -16.18530 -15.66125 -15.27368 -14.93572 -14.91345 -14.61233 -14.53979 -14.19407 -13.83662 -13.57476 -13.33294 -13.09189 -13.01898 -12.96130 -12.75753 -12.70352 -12.44725 -12.28830 -12.01741 -11.58421 -11.44303 -11.25014 -10.99476 -10.94707 -10.59355 -10.35856 -10.26377 -10.10108 -9.81704 -9.73578 -9.55281 -9.39666 -9.14758 -8.88461 -8.36869 -8.08259 -7.90717 -6.02099 -4.07622 0.85364 1.30800 1.82848 1.99327 2.97591 3.28341 3.36722 3.41503 3.43615 3.58893 3.74831 4.15209 4.32324 4.42465 4.67350 4.93080 4.93315 5.01429 5.14127 5.22636 5.27058 5.28132 5.33885 5.40709 5.52593 5.66605 5.71684 5.77239 5.91737 5.97882 6.07509 6.11846 6.18106 6.21525 6.32723 6.37413 6.49436 6.69723 6.94469 7.07784 7.16827 7.19531 7.31131 7.48998 7.68429 7.92490 7.94162 7.98542 8.05835 8.42260 8.61310 8.95853 9.57338 11.03463 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.020236 B = 0.002655 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.352464 B =10544.437234 C =11031.569104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.529 5.529 3 C 0.146 3.854 4 C -0.189 4.189 5 C -0.012 4.012 6 C -0.182 4.182 7 C 0.544 3.456 8 O -0.559 6.559 9 N -0.593 5.593 10 C 0.101 3.899 11 C -0.124 4.124 12 C 0.049 3.951 13 C -0.509 4.509 14 H 0.055 0.945 15 C 0.061 3.939 16 N -0.892 5.892 17 Si 0.890 3.110 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.284 1.284 21 C -0.123 4.123 22 C 0.115 3.885 23 C 0.572 3.428 24 O -0.500 6.500 25 N -0.552 5.552 26 C 0.083 3.917 27 C 0.696 3.304 28 O -0.551 6.551 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.175 0.825 33 H 0.141 0.859 34 H 0.140 0.860 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.040 0.960 38 H 0.104 0.896 39 H 0.027 0.973 40 H 0.259 0.741 41 H 0.052 0.948 42 H 0.059 0.941 43 H 0.075 0.925 44 H 0.057 0.943 45 H 0.100 0.900 46 H 0.075 0.925 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.402 -1.434 13.194 23.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.249 5.249 3 C 0.024 3.976 4 C -0.198 4.198 5 C -0.034 4.034 6 C -0.202 4.202 7 C 0.335 3.665 8 O -0.441 6.441 9 N -0.324 5.324 10 C -0.021 4.021 11 C -0.163 4.163 12 C 0.031 3.969 13 C -0.548 4.548 14 H 0.073 0.927 15 C -0.140 4.140 16 N -0.532 5.532 17 Si 0.718 3.282 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.210 1.210 21 C -0.161 4.161 22 C -0.007 4.007 23 C 0.366 3.634 24 O -0.373 6.373 25 N -0.296 5.296 26 C -0.058 4.058 27 C 0.399 3.601 28 O -0.426 6.426 29 H 0.111 0.889 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.192 0.808 33 H 0.158 0.842 34 H 0.157 0.843 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.059 0.941 38 H 0.122 0.878 39 H 0.045 0.955 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.077 0.923 43 H 0.093 0.907 44 H 0.076 0.924 45 H 0.119 0.881 46 H 0.094 0.906 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -19.431 -2.470 13.095 23.561 hybrid contribution 1.206 0.042 -0.411 1.275 sum -18.224 -2.429 12.684 22.336 Atomic orbital electron populations 1.22009 0.74977 1.04080 1.04384 1.44077 1.09188 1.04275 1.67316 1.22433 0.92017 0.89313 0.93877 1.20314 0.91644 0.93394 1.14496 1.21583 0.93166 0.91730 0.96881 1.22488 1.01205 1.02291 0.94227 1.17082 0.80716 0.84582 0.84074 1.90711 1.39560 1.31276 1.82565 1.48173 1.41052 1.26060 1.17158 1.22218 0.93353 0.85742 1.00823 1.22100 0.91764 1.03340 0.99046 1.18629 0.94163 0.90858 0.93281 1.21251 0.93409 0.92915 1.47193 0.92689 1.24956 0.98779 0.95010 0.95255 1.69843 1.33650 0.99237 1.50437 0.86562 0.85035 0.78684 0.77887 1.19843 1.21076 1.21049 1.22003 0.93043 1.00623 1.00445 1.21635 0.98905 0.94007 0.86202 1.18332 0.87223 0.83239 0.74649 1.90844 1.12652 1.86358 1.47432 1.46105 1.05725 1.10543 1.67203 1.21850 0.99531 0.81024 1.03397 1.15610 0.81812 0.83904 0.78775 1.90976 1.65228 1.31503 1.54926 0.88945 0.90276 0.90237 0.80784 0.84194 0.84253 0.91908 0.91191 0.94079 0.87813 0.95529 0.93074 0.92932 0.92281 0.90674 0.92420 0.88092 0.90648 0.90516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.51 9.94 59.85 0.59 1.11 16 2 N -0.53 -5.35 2.98 -128.42 -0.38 -5.73 16 3 C 0.15 1.34 10.20 -15.69 -0.16 1.18 16 4 C -0.19 -2.40 3.68 -102.80 -0.38 -2.77 16 5 C -0.01 -0.14 9.47 -37.27 -0.35 -0.49 16 6 C -0.18 -2.50 9.17 -39.33 -0.36 -2.86 16 7 C 0.54 9.59 7.16 -14.97 -0.11 9.49 16 8 O -0.56 -10.81 12.22 4.02 0.05 -10.76 16 9 N -0.59 -10.96 2.97 -175.91 -0.52 -11.48 16 10 C 0.10 1.80 6.36 -3.49 -0.02 1.78 16 11 C -0.12 -2.77 5.17 -26.38 -0.14 -2.91 16 12 C 0.05 1.19 2.06 -91.73 -0.19 1.00 16 13 C -0.51 -13.81 8.56 -34.44 -0.29 -14.10 16 14 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 15 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 16 N -0.89 -24.53 11.31 55.43 0.63 -23.91 16 17 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 18 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 C -0.12 -2.63 5.30 -26.61 -0.14 -2.77 16 22 C 0.11 2.19 6.42 -3.71 -0.02 2.17 16 23 C 0.57 9.18 5.89 -12.47 -0.07 9.11 16 24 O -0.50 -9.62 15.84 4.10 0.07 -9.55 16 25 N -0.55 -8.10 2.96 -129.59 -0.38 -8.48 16 26 C 0.08 1.05 9.96 59.84 0.60 1.64 16 27 C 0.70 9.48 8.09 -87.76 -0.71 8.77 16 28 O -0.55 -8.37 16.08 5.31 0.09 -8.29 16 29 H 0.09 0.21 7.72 -51.93 -0.40 -0.19 16 30 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.18 0.80 7.84 -52.49 -0.41 0.38 16 33 H 0.14 0.98 8.06 -52.48 -0.42 0.56 16 34 H 0.14 1.63 5.73 -52.49 -0.30 1.33 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 36 H 0.07 1.04 5.29 -51.93 -0.27 0.77 16 37 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.10 2.55 6.03 -51.93 -0.31 2.24 16 39 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 41 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 43 H 0.07 1.46 7.04 -51.93 -0.37 1.09 16 44 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.10 1.32 6.92 -51.93 -0.36 0.96 16 46 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 47 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 380.02 15.07 5.73 5.73 Total: -1.00 -35.61 380.02 -8.23 -43.84 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -6.62 Total: 0.66 kcal Atomic # 6 Polarization: 13.73 SS G_CDS: -1.85 Total: 11.87 kcal Atomic # 7 Polarization: -48.93 SS G_CDS: -0.66 Total: -49.59 kcal Atomic # 8 Polarization: -28.80 SS G_CDS: 0.20 Total: -28.60 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.61 -8.23 -43.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492495618.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.405 kcal (2) G-P(sol) polarization free energy of solvation -35.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds