Wall clock time and date at job start Wed Apr 1 2020 05:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46849 * 111.00047 * 2 1 4 4 C 1.53038 * 109.52055 * 174.16384 * 3 2 1 5 5 C 1.53117 * 109.28091 * 59.18275 * 4 3 2 6 6 C 1.53122 * 109.15653 * 302.34209 * 5 4 3 7 7 H 1.08995 * 109.50672 * 297.67046 * 6 5 4 8 8 N 1.46507 * 109.49776 * 177.59739 * 6 5 4 9 9 C 1.34772 * 119.99612 * 155.00425 * 8 6 5 10 10 O 1.21371 * 120.00492 * 359.97438 * 9 8 6 11 11 C 1.49325 * 120.00285 * 179.97438 * 9 8 6 12 12 O 1.21391 * 119.99226 * 359.97438 * 11 9 8 13 13 N 1.34774 * 120.00318 * 179.97438 * 11 9 8 14 14 C 1.39738 * 119.99751 * 174.78248 * 13 11 9 15 15 C 1.38995 * 120.00573 * 146.27320 * 14 13 11 16 16 C 1.37969 * 119.99422 * 179.97438 * 15 14 13 17 17 C 1.38932 * 120.00742 * 359.97438 * 16 15 14 18 18 O 1.35764 * 119.99609 * 179.97438 * 17 16 15 19 19 C 1.34798 * 116.99471 * 5.91398 * 18 17 16 20 20 H 1.08003 * 120.00649 * 5.40191 * 19 18 17 21 21 C 1.38650 * 119.99939 * 185.39654 * 19 18 17 22 22 N 1.31565 * 119.99795 * 0.27939 * 21 19 18 23 23 Si 1.86797 * 120.00350 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46909 * 90.00159 * 23 21 19 25 25 H 1.48500 * 109.47527 * 210.00177 * 23 21 19 26 26 H 1.48500 * 109.47127 * 330.00721 * 23 21 19 27 27 C 1.38940 * 120.01457 * 0.27275 * 17 16 15 28 28 C 1.37966 * 120.00346 * 359.48953 * 27 17 16 29 29 C 1.46852 * 110.99930 * 235.79380 * 2 1 3 30 30 H 1.08998 * 109.46960 * 56.04483 * 1 2 3 31 31 H 1.08999 * 109.47135 * 176.04447 * 1 2 3 32 32 H 1.09003 * 109.46826 * 296.04339 * 1 2 3 33 33 H 1.08994 * 109.45941 * 54.14564 * 3 2 1 34 34 H 1.09003 * 109.46119 * 294.17875 * 3 2 1 35 35 H 1.08997 * 109.50674 * 299.23514 * 4 3 2 36 36 H 1.09004 * 109.50011 * 179.12175 * 4 3 2 37 37 H 1.08998 * 109.52314 * 182.43798 * 5 4 3 38 38 H 1.08996 * 109.52187 * 62.24540 * 5 4 3 39 39 H 0.96999 * 120.00389 * 334.99669 * 8 6 5 40 40 H 0.97000 * 120.00295 * 354.78870 * 13 11 9 41 41 H 1.08001 * 120.00608 * 359.95427 * 15 14 13 42 42 H 1.07997 * 119.99670 * 179.97438 * 16 15 14 43 43 H 0.97002 * 119.99749 * 359.72009 * 22 21 19 44 44 H 1.08002 * 119.99944 * 179.74551 * 27 17 16 45 45 H 1.08004 * 120.00213 * 180.22971 * 28 27 17 46 46 H 1.08994 * 109.46569 * 65.81745 * 29 2 1 47 47 H 1.09005 * 109.46106 * 305.85217 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3341 0.1467 5 6 4.1188 0.5370 -1.0145 6 6 3.5181 -0.8715 -1.0209 7 1 3.7820 -1.3839 -0.0959 8 7 4.0447 -1.6225 -2.1634 9 6 4.0861 -2.9689 -2.1232 10 8 3.6876 -3.5594 -1.1405 11 6 4.6222 -3.7346 -3.2877 12 8 5.0203 -3.1440 -4.2708 13 7 4.6642 -5.0810 -3.2474 14 6 5.0630 -5.8018 -4.3762 15 6 5.7670 -6.9911 -4.2286 16 6 6.1602 -7.7027 -5.3432 17 6 5.8520 -7.2310 -6.6132 18 8 6.2394 -7.9312 -7.7099 19 6 6.8104 -9.1338 -7.4978 20 1 6.8626 -9.5380 -6.4977 21 6 7.3306 -9.8518 -8.5637 22 7 7.2718 -9.3570 -9.7813 23 14 8.1224 -11.5180 -8.2699 24 1 7.0919 -12.5818 -8.3781 25 1 9.1810 -11.7491 -9.2854 26 1 8.7237 -11.5477 -6.9124 27 6 5.1527 -6.0396 -6.7612 28 6 4.7550 -5.3300 -5.6469 29 6 1.9953 -0.7707 -1.1338 30 1 -0.3633 0.5740 -0.8524 31 1 -0.3633 -1.0252 -0.0709 32 1 -0.3633 0.4512 0.9234 33 1 1.5635 1.9256 0.8329 34 1 1.7324 1.8608 -0.9376 35 1 3.7815 0.8567 1.0905 36 1 3.9099 2.3512 0.1310 37 1 5.1997 0.4714 -0.8907 38 1 3.8886 1.0355 -1.9561 39 1 4.3634 -1.1506 -2.9486 40 1 4.4174 -5.5499 -2.4348 41 1 6.0066 -7.3579 -3.2414 42 1 6.7076 -8.6266 -5.2286 43 1 6.8610 -8.4917 -9.9339 44 1 4.9168 -5.6710 -7.7486 45 1 4.2081 -4.4058 -5.7619 46 1 1.7324 -0.2709 -2.0660 47 1 1.5634 -1.7715 -1.1243 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001337645708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:33:32 Heat of formation + Delta-G solvation = -65.510370 kcal Electronic energy + Delta-G solvation = -29295.399373 eV Core-core repulsion = 25057.878755 eV Total energy + Delta-G solvation = -4237.520617 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.05953 -39.87358 -39.03002 -38.33133 -36.74442 -35.49521 -34.12488 -33.16726 -32.20787 -30.39104 -30.26684 -28.32336 -27.25350 -25.44735 -24.78449 -23.43564 -22.86211 -22.28447 -21.29318 -20.69010 -20.09628 -18.75991 -18.39433 -17.44837 -16.88784 -16.42662 -16.23621 -16.02617 -15.61971 -15.49812 -15.09882 -14.84995 -14.53959 -14.14440 -14.04346 -13.92280 -13.79307 -13.74338 -13.54549 -13.19971 -13.14998 -12.74710 -12.65377 -12.29090 -12.07440 -11.97730 -11.85953 -11.65130 -11.39414 -11.23521 -11.12429 -11.04090 -10.89324 -10.44105 -10.33730 -9.86195 -9.69529 -9.59268 -9.36749 -8.82833 -8.72594 -8.36240 -7.09984 -6.82607 -4.10458 1.17742 2.04145 2.07797 2.27174 3.13117 3.21634 3.27812 3.34192 3.41064 3.67443 4.07601 4.17696 4.30265 4.36369 4.44042 4.47308 4.60984 4.80399 4.95181 4.99427 5.01758 5.04453 5.09584 5.12252 5.19048 5.36366 5.40316 5.43226 5.45748 5.50441 5.61146 5.63600 5.76087 5.90932 5.95286 6.05188 6.07478 6.52710 6.55481 6.61584 6.65883 6.70721 6.91387 6.98601 7.15280 7.35650 7.49756 7.56069 7.65210 8.00756 8.34238 8.85790 9.54038 10.61513 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.034695 B = 0.001644 C = 0.001634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.849974 B =17023.367812 C =17127.987564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.540 5.540 3 C 0.050 3.950 4 C -0.113 4.113 5 C -0.130 4.130 6 C 0.147 3.853 7 H 0.102 0.898 8 N -0.699 5.699 9 C 0.513 3.487 10 O -0.516 6.516 11 C 0.496 3.504 12 O -0.509 6.509 13 N -0.624 5.624 14 C 0.028 3.972 15 C -0.082 4.082 16 C -0.214 4.214 17 C 0.152 3.848 18 O -0.197 6.197 19 C -0.472 4.472 20 H 0.085 0.915 21 C 0.010 3.990 22 N -0.878 5.878 23 Si 1.099 2.901 24 H -0.280 1.280 25 H -0.275 1.275 26 H -0.282 1.282 27 C -0.180 4.180 28 C -0.064 4.064 29 C 0.045 3.955 30 H 0.026 0.974 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.035 0.965 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.414 0.586 40 H 0.414 0.586 41 H 0.115 0.885 42 H 0.135 0.865 43 H 0.283 0.717 44 H 0.121 0.879 45 H 0.125 0.875 46 H 0.038 0.962 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.741 19.804 19.845 29.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.265 5.265 3 C -0.077 4.077 4 C -0.151 4.151 5 C -0.168 4.168 6 C 0.042 3.958 7 H 0.120 0.880 8 N -0.353 5.353 9 C 0.294 3.706 10 O -0.391 6.391 11 C 0.277 3.723 12 O -0.385 6.385 13 N -0.270 5.270 14 C -0.064 4.064 15 C -0.102 4.102 16 C -0.234 4.234 17 C 0.098 3.902 18 O -0.101 6.101 19 C -0.548 4.548 20 H 0.103 0.897 21 C -0.196 4.196 22 N -0.509 5.509 23 Si 0.923 3.077 24 H -0.206 1.206 25 H -0.200 1.200 26 H -0.208 1.208 27 C -0.200 4.200 28 C -0.083 4.083 29 C -0.084 4.084 30 H 0.044 0.956 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.053 0.947 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.250 0.750 40 H 0.251 0.749 41 H 0.133 0.867 42 H 0.152 0.848 43 H 0.093 0.907 44 H 0.139 0.861 45 H 0.143 0.857 46 H 0.056 0.944 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.846 18.339 19.238 28.012 hybrid contribution -1.056 1.679 0.205 1.994 sum -9.902 20.018 19.443 29.611 Atomic orbital electron populations 1.22360 0.86626 1.02293 1.00922 1.61821 1.08043 1.13585 1.43006 1.22179 0.95608 0.89163 1.00794 1.21531 0.94329 1.00350 0.98901 1.21893 1.01071 0.94094 0.99783 1.21047 0.92564 0.92200 0.89961 0.87951 1.45779 1.63121 1.05675 1.20707 1.20180 0.79361 0.83384 0.87684 1.90779 1.46237 1.68984 1.33140 1.20026 0.80828 0.83480 0.87981 1.90789 1.45511 1.68777 1.33394 1.42882 1.63711 1.05077 1.15302 1.17221 1.07669 0.95871 0.85662 1.20526 0.96952 0.94308 0.98379 1.21005 1.07632 1.03380 0.91412 1.19297 0.92901 0.90921 0.87051 1.83683 1.67640 1.30250 1.28560 1.22254 1.41715 0.92546 0.98237 0.89729 1.26573 0.96439 1.05147 0.91397 1.70547 1.39124 1.20321 1.20957 0.83048 0.76608 0.72146 0.75898 1.20646 1.20021 1.20774 1.20080 1.05541 0.95803 0.98600 1.20567 0.98596 0.98975 0.90209 1.22472 0.95000 0.99162 0.91776 0.95554 0.91138 0.91047 0.90346 0.94686 0.90508 0.90617 0.90504 0.91279 0.75004 0.74904 0.86687 0.84764 0.90670 0.86089 0.85726 0.94425 0.89963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.62 60.07 0.58 0.74 16 2 N -0.54 -4.06 4.91 -242.96 -1.19 -5.25 16 3 C 0.05 0.29 5.46 -3.83 -0.02 0.27 16 4 C -0.11 -0.58 6.09 -26.65 -0.16 -0.74 16 5 C -0.13 -0.76 5.47 -26.61 -0.15 -0.91 16 6 C 0.15 1.20 2.62 -67.85 -0.18 1.02 16 7 H 0.10 1.01 7.58 -51.93 -0.39 0.62 16 8 N -0.70 -6.56 5.07 -54.20 -0.27 -6.83 16 9 C 0.51 6.24 7.85 -11.65 -0.09 6.15 16 10 O -0.52 -7.12 16.14 5.48 0.09 -7.03 16 11 C 0.50 7.07 7.62 -11.65 -0.09 6.98 16 12 O -0.51 -8.35 14.18 5.46 0.08 -8.28 16 13 N -0.62 -9.05 5.32 -10.27 -0.05 -9.11 16 14 C 0.03 0.49 6.27 -83.69 -0.52 -0.03 16 15 C -0.08 -1.46 9.96 -39.40 -0.39 -1.86 16 16 C -0.21 -4.57 9.12 -39.42 -0.36 -4.93 16 17 C 0.15 3.63 6.65 -39.06 -0.26 3.37 16 18 O -0.20 -5.48 9.16 0.10 0.00 -5.48 16 19 C -0.47 -13.03 9.44 30.88 0.29 -12.73 16 20 H 0.09 2.18 5.29 -52.48 -0.28 1.90 16 21 C 0.01 0.28 5.49 -17.51 -0.10 0.19 16 22 N -0.88 -25.92 13.70 55.48 0.76 -25.16 16 23 Si 1.10 23.34 29.92 -169.99 -5.09 18.26 16 24 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 25 H -0.28 -5.80 7.11 56.52 0.40 -5.39 16 26 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 27 C -0.18 -3.83 9.98 -39.42 -0.39 -4.22 16 28 C -0.06 -1.21 8.65 -39.40 -0.34 -1.55 16 29 C 0.05 0.37 5.04 -3.83 -0.02 0.36 16 30 H 0.03 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.07 0.45 8.02 -51.93 -0.42 0.04 16 32 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.08 0.38 8.12 -51.93 -0.42 -0.04 16 34 H 0.03 0.20 8.14 -51.93 -0.42 -0.22 16 35 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.41 3.46 8.07 -40.82 -0.33 3.13 16 40 H 0.41 5.10 8.30 -40.82 -0.34 4.76 16 41 H 0.12 1.69 8.06 -52.49 -0.42 1.27 16 42 H 0.13 2.86 5.71 -52.49 -0.30 2.56 16 43 H 0.28 8.55 7.97 -40.82 -0.33 8.23 16 44 H 0.12 2.44 8.06 -52.49 -0.42 2.02 16 45 H 0.12 2.24 6.44 -52.48 -0.34 1.90 16 46 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 47 H 0.08 0.82 8.04 -51.93 -0.42 0.40 16 LS Contribution 389.84 15.07 5.87 5.87 Total: -1.00 -32.19 389.84 -8.59 -40.78 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: -6.58 Total: 10.12 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: -2.20 Total: -7.89 kcal Atomic # 7 Polarization: -45.59 SS G_CDS: -0.76 Total: -46.35 kcal Atomic # 8 Polarization: -20.95 SS G_CDS: 0.17 Total: -20.79 kcal Atomic # 14 Polarization: 23.34 SS G_CDS: -5.09 Total: 18.26 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.19 -8.59 -40.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337645708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.728 kcal (2) G-P(sol) polarization free energy of solvation -32.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds