Wall clock time and date at job start Wed Apr 1 2020 05:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46849 * 111.00047 * 2 1 4 4 C 1.53038 * 109.52055 * 174.16384 * 3 2 1 5 5 C 1.53117 * 109.28091 * 59.18275 * 4 3 2 6 6 C 1.53122 * 109.15653 * 302.34209 * 5 4 3 7 7 H 1.08995 * 109.50672 * 297.67046 * 6 5 4 8 8 N 1.46507 * 109.49776 * 177.59739 * 6 5 4 9 9 C 1.34772 * 119.99612 * 155.00425 * 8 6 5 10 10 O 1.21371 * 120.00492 * 359.97438 * 9 8 6 11 11 C 1.49325 * 120.00285 * 179.97438 * 9 8 6 12 12 O 1.21391 * 119.99226 * 359.97438 * 11 9 8 13 13 N 1.34774 * 120.00318 * 179.97438 * 11 9 8 14 14 C 1.39738 * 119.99751 * 174.78248 * 13 11 9 15 15 C 1.38995 * 120.00573 * 146.27320 * 14 13 11 16 16 C 1.37969 * 119.99422 * 179.97438 * 15 14 13 17 17 C 1.38932 * 120.00742 * 359.97438 * 16 15 14 18 18 O 1.35764 * 119.99609 * 179.97438 * 17 16 15 19 19 C 1.34798 * 116.99471 * 5.91398 * 18 17 16 20 20 H 1.08003 * 120.00649 * 5.40191 * 19 18 17 21 21 C 1.38650 * 119.99939 * 185.39654 * 19 18 17 22 22 N 1.31565 * 119.99795 * 0.27939 * 21 19 18 23 23 Si 1.86797 * 120.00350 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46909 * 90.00159 * 23 21 19 25 25 H 1.48500 * 109.47527 * 210.00177 * 23 21 19 26 26 H 1.48500 * 109.47127 * 330.00721 * 23 21 19 27 27 C 1.38940 * 120.01457 * 0.27275 * 17 16 15 28 28 C 1.37966 * 120.00346 * 359.48953 * 27 17 16 29 29 C 1.46852 * 110.99930 * 235.79380 * 2 1 3 30 30 H 1.08998 * 109.46960 * 56.04483 * 1 2 3 31 31 H 1.08999 * 109.47135 * 176.04447 * 1 2 3 32 32 H 1.09003 * 109.46826 * 296.04339 * 1 2 3 33 33 H 1.08994 * 109.45941 * 54.14564 * 3 2 1 34 34 H 1.09003 * 109.46119 * 294.17875 * 3 2 1 35 35 H 1.08997 * 109.50674 * 299.23514 * 4 3 2 36 36 H 1.09004 * 109.50011 * 179.12175 * 4 3 2 37 37 H 1.08998 * 109.52314 * 182.43798 * 5 4 3 38 38 H 1.08996 * 109.52187 * 62.24540 * 5 4 3 39 39 H 0.96999 * 120.00389 * 334.99669 * 8 6 5 40 40 H 0.97000 * 120.00295 * 354.78870 * 13 11 9 41 41 H 1.08001 * 120.00608 * 359.95427 * 15 14 13 42 42 H 1.07997 * 119.99670 * 179.97438 * 16 15 14 43 43 H 0.97002 * 119.99749 * 359.72009 * 22 21 19 44 44 H 1.08002 * 119.99944 * 179.74551 * 27 17 16 45 45 H 1.08004 * 120.00213 * 180.22971 * 28 27 17 46 46 H 1.08994 * 109.46569 * 65.81745 * 29 2 1 47 47 H 1.09005 * 109.46106 * 305.85217 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3341 0.1467 5 6 4.1188 0.5370 -1.0145 6 6 3.5181 -0.8715 -1.0209 7 1 3.7820 -1.3839 -0.0959 8 7 4.0447 -1.6225 -2.1634 9 6 4.0861 -2.9689 -2.1232 10 8 3.6876 -3.5594 -1.1405 11 6 4.6222 -3.7346 -3.2877 12 8 5.0203 -3.1440 -4.2708 13 7 4.6642 -5.0810 -3.2474 14 6 5.0630 -5.8018 -4.3762 15 6 5.7670 -6.9911 -4.2286 16 6 6.1602 -7.7027 -5.3432 17 6 5.8520 -7.2310 -6.6132 18 8 6.2394 -7.9312 -7.7099 19 6 6.8104 -9.1338 -7.4978 20 1 6.8626 -9.5380 -6.4977 21 6 7.3306 -9.8518 -8.5637 22 7 7.2718 -9.3570 -9.7813 23 14 8.1224 -11.5180 -8.2699 24 1 7.0919 -12.5818 -8.3781 25 1 9.1810 -11.7491 -9.2854 26 1 8.7237 -11.5477 -6.9124 27 6 5.1527 -6.0396 -6.7612 28 6 4.7550 -5.3300 -5.6469 29 6 1.9953 -0.7707 -1.1338 30 1 -0.3633 0.5740 -0.8524 31 1 -0.3633 -1.0252 -0.0709 32 1 -0.3633 0.4512 0.9234 33 1 1.5635 1.9256 0.8329 34 1 1.7324 1.8608 -0.9376 35 1 3.7815 0.8567 1.0905 36 1 3.9099 2.3512 0.1310 37 1 5.1997 0.4714 -0.8907 38 1 3.8886 1.0355 -1.9561 39 1 4.3634 -1.1506 -2.9486 40 1 4.4174 -5.5499 -2.4348 41 1 6.0066 -7.3579 -3.2414 42 1 6.7076 -8.6266 -5.2286 43 1 6.8610 -8.4917 -9.9339 44 1 4.9168 -5.6710 -7.7486 45 1 4.2081 -4.4058 -5.7619 46 1 1.7324 -0.2709 -2.0660 47 1 1.5634 -1.7715 -1.1243 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001337645708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:33:31 Heat of formation + Delta-G solvation = -89.497166 kcal Electronic energy + Delta-G solvation = -29296.439518 eV Core-core repulsion = 25057.878755 eV Total energy + Delta-G solvation = -4238.560763 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.19249 -41.05885 -40.33740 -39.38110 -38.33418 -36.38211 -35.46296 -34.16579 -33.74259 -32.01514 -30.99018 -29.85558 -27.76328 -27.12211 -26.14751 -24.13260 -23.93676 -23.59812 -22.64984 -21.57949 -21.06297 -20.29752 -19.70812 -18.95165 -18.20199 -17.55029 -17.27469 -17.13894 -16.78234 -16.29416 -16.16101 -15.81609 -15.73551 -15.60262 -15.49802 -15.26269 -14.99949 -14.76658 -14.57306 -14.34029 -14.22780 -13.68770 -13.60507 -13.48148 -13.24014 -13.05942 -12.87665 -12.75086 -12.55394 -12.49244 -12.21940 -11.90692 -11.87357 -11.72381 -11.59940 -11.52042 -11.18918 -10.78488 -10.61303 -10.41233 -9.97489 -9.36786 -8.93761 -8.78483 -6.23113 -0.02432 0.41077 0.63344 1.14795 1.51240 1.63866 1.79408 2.00507 2.36046 2.42644 2.76759 2.98682 3.10735 3.28546 3.30011 3.62231 3.76507 3.93480 3.97493 4.00206 4.09508 4.21245 4.37917 4.44743 4.45575 4.48821 4.52663 4.56808 4.59426 4.71539 4.80701 4.89156 4.98681 4.99657 5.03147 5.03917 5.09197 5.17019 5.18174 5.32226 5.34720 5.39447 5.61697 5.79229 5.95074 5.99926 6.08462 6.23652 6.25565 6.64121 6.82404 6.86048 7.60882 8.51095 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.034695 B = 0.001644 C = 0.001634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.849974 B =17023.367812 C =17127.987564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.553 5.553 3 C 0.048 3.952 4 C -0.109 4.109 5 C -0.125 4.125 6 C 0.148 3.852 7 H 0.087 0.913 8 N -0.683 5.683 9 C 0.521 3.479 10 O -0.532 6.532 11 C 0.501 3.499 12 O -0.527 6.527 13 N -0.621 5.621 14 C 0.057 3.943 15 C -0.074 4.074 16 C -0.217 4.217 17 C 0.114 3.886 18 O -0.247 6.247 19 C -0.486 4.486 20 H 0.096 0.904 21 C -0.045 4.045 22 N -0.917 5.917 23 Si 1.148 2.852 24 H -0.265 1.265 25 H -0.276 1.276 26 H -0.256 1.256 27 C -0.185 4.185 28 C -0.066 4.066 29 C 0.050 3.950 30 H 0.030 0.970 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.038 0.962 35 H 0.070 0.930 36 H 0.095 0.905 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.420 0.580 40 H 0.429 0.571 41 H 0.158 0.842 42 H 0.132 0.868 43 H 0.261 0.739 44 H 0.121 0.879 45 H 0.138 0.862 46 H 0.040 0.960 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.094 21.360 23.167 33.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.278 5.278 3 C -0.079 4.079 4 C -0.148 4.148 5 C -0.163 4.163 6 C 0.044 3.956 7 H 0.105 0.895 8 N -0.336 5.336 9 C 0.301 3.699 10 O -0.409 6.409 11 C 0.283 3.717 12 O -0.404 6.404 13 N -0.268 5.268 14 C -0.037 4.037 15 C -0.094 4.094 16 C -0.236 4.236 17 C 0.064 3.936 18 O -0.154 6.154 19 C -0.562 4.562 20 H 0.114 0.886 21 C -0.241 4.241 22 N -0.552 5.552 23 Si 0.963 3.037 24 H -0.190 1.190 25 H -0.201 1.201 26 H -0.180 1.180 27 C -0.205 4.205 28 C -0.086 4.086 29 C -0.079 4.079 30 H 0.048 0.952 31 H 0.082 0.918 32 H 0.101 0.899 33 H 0.107 0.893 34 H 0.056 0.944 35 H 0.089 0.911 36 H 0.114 0.886 37 H 0.101 0.899 38 H 0.097 0.903 39 H 0.258 0.742 40 H 0.268 0.732 41 H 0.175 0.825 42 H 0.150 0.850 43 H 0.069 0.931 44 H 0.139 0.861 45 H 0.156 0.844 46 H 0.059 0.941 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.238 19.970 22.636 31.568 hybrid contribution -1.138 1.557 -0.511 1.995 sum -10.376 21.527 22.126 32.567 Atomic orbital electron populations 1.22387 0.86044 1.02107 1.01700 1.61847 1.08745 1.14682 1.42519 1.22268 0.96041 0.88193 1.01414 1.21541 0.93866 1.01222 0.98142 1.21895 1.01289 0.92446 1.00715 1.21144 0.92738 0.93194 0.88546 0.89487 1.45782 1.61838 1.04724 1.21293 1.19718 0.79496 0.84064 0.86621 1.90790 1.47303 1.69415 1.33384 1.20421 0.79746 0.83259 0.88243 1.90793 1.46013 1.69182 1.34366 1.42831 1.63756 1.05309 1.14876 1.17346 1.04789 0.95284 0.86234 1.20851 0.95606 0.93711 0.99210 1.21137 1.07492 1.03573 0.91444 1.19802 0.94293 0.92018 0.87491 1.83664 1.70236 1.31084 1.30459 1.22643 1.41462 0.93193 0.98884 0.88626 1.28394 0.96437 1.08519 0.90745 1.70687 1.42222 1.19882 1.22370 0.82539 0.76154 0.67998 0.76979 1.18956 1.20094 1.18039 1.20257 1.05206 0.95330 0.99660 1.20737 0.98501 0.99207 0.90182 1.22348 0.94824 0.98376 0.92393 0.95154 0.91807 0.89913 0.89299 0.94362 0.91096 0.88641 0.89911 0.90286 0.74171 0.73163 0.82463 0.85034 0.93086 0.86130 0.84390 0.94136 0.91997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.62 127.69 1.23 1.51 16 2 N -0.55 -7.36 4.91 -922.58 -4.53 -11.90 16 3 C 0.05 0.43 5.46 86.33 0.47 0.91 16 4 C -0.11 -0.82 6.09 30.65 0.19 -0.63 16 5 C -0.13 -1.13 5.47 30.67 0.17 -0.96 16 6 C 0.15 2.13 2.62 45.04 0.12 2.25 16 7 H 0.09 1.59 7.58 -2.39 -0.02 1.57 16 8 N -0.68 -11.30 5.07 -443.74 -2.25 -13.55 16 9 C 0.52 11.48 7.85 87.23 0.68 12.17 16 10 O -0.53 -13.56 16.14 -3.31 -0.05 -13.62 16 11 C 0.50 12.98 7.62 87.23 0.66 13.64 16 12 O -0.53 -16.03 14.18 -3.37 -0.05 -16.08 16 13 N -0.62 -16.05 5.32 -304.74 -1.62 -17.67 16 14 C 0.06 1.85 6.27 38.24 0.24 2.09 16 15 C -0.07 -2.45 9.96 22.39 0.22 -2.23 16 16 C -0.22 -9.11 9.12 22.37 0.20 -8.90 16 17 C 0.11 5.60 6.65 22.60 0.15 5.75 16 18 O -0.25 -14.47 9.16 -22.57 -0.21 -14.68 16 19 C -0.49 -27.84 9.44 67.92 0.64 -27.20 16 20 H 0.10 5.02 5.29 -2.91 -0.02 5.01 16 21 C -0.04 -2.53 5.49 84.83 0.47 -2.06 16 22 N -0.92 -57.05 13.70 21.61 0.30 -56.75 16 23 Si 1.15 47.37 29.92 68.60 2.05 49.42 16 24 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 25 H -0.28 -11.28 7.11 99.48 0.71 -10.58 16 26 H -0.26 -9.36 7.11 99.48 0.71 -8.66 16 27 C -0.18 -7.95 9.98 22.37 0.22 -7.73 16 28 C -0.07 -2.43 8.65 22.39 0.19 -2.24 16 29 C 0.05 0.76 5.04 86.32 0.43 1.19 16 30 H 0.03 0.30 8.14 -2.39 -0.02 0.29 16 31 H 0.06 0.77 8.02 -2.39 -0.02 0.75 16 32 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.09 0.63 8.12 -2.39 -0.02 0.61 16 34 H 0.04 0.33 8.14 -2.39 -0.02 0.31 16 35 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 37 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.42 5.99 8.07 -92.71 -0.75 5.24 16 40 H 0.43 9.02 8.30 -92.71 -0.77 8.25 16 41 H 0.16 3.90 8.06 -2.91 -0.02 3.88 16 42 H 0.13 5.56 5.71 -2.91 -0.02 5.54 16 43 H 0.26 16.93 7.97 -92.71 -0.74 16.19 16 44 H 0.12 5.07 8.06 -2.91 -0.02 5.05 16 45 H 0.14 4.70 6.44 -2.91 -0.02 4.68 16 46 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 47 H 0.06 1.18 8.04 -2.38 -0.02 1.16 16 Total: -1.00 -73.42 389.84 -0.53 -73.95 By element: Atomic # 1 Polarization: 33.79 SS G_CDS: -0.46 Total: 33.33 kcal Atomic # 6 Polarization: -18.75 SS G_CDS: 6.30 Total: -12.45 kcal Atomic # 7 Polarization: -91.76 SS G_CDS: -8.11 Total: -99.87 kcal Atomic # 8 Polarization: -44.07 SS G_CDS: -0.31 Total: -44.38 kcal Atomic # 14 Polarization: 47.37 SS G_CDS: 2.05 Total: 49.42 kcal Total: -73.42 -0.53 -73.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337645708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.552 kcal (2) G-P(sol) polarization free energy of solvation -73.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds