Wall clock time and date at job start Wed Apr 1 2020 04:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46504 * 120.00463 * 2 1 4 4 C 1.50697 * 109.47527 * 270.00600 * 3 2 1 5 5 H 1.08009 * 119.99486 * 359.97438 * 4 3 2 6 6 C 1.37868 * 120.00223 * 179.97438 * 4 3 2 7 7 N 1.31519 * 120.00106 * 359.97438 * 6 4 3 8 8 Si 1.86805 * 120.00029 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.47346 * 59.99815 * 8 6 4 10 10 H 1.48503 * 109.47098 * 179.97438 * 8 6 4 11 11 H 1.48507 * 109.46814 * 299.99771 * 8 6 4 12 12 C 1.34776 * 119.99801 * 180.02562 * 2 1 3 13 13 O 1.21282 * 119.99940 * 180.02562 * 12 2 1 14 14 C 1.50698 * 120.00035 * 359.97438 * 12 2 1 15 15 C 1.53006 * 109.47184 * 180.02562 * 14 12 2 16 16 N 1.46898 * 109.47006 * 180.02562 * 15 14 12 17 17 C 1.47165 * 110.99790 * 170.00332 * 16 15 14 18 18 C 1.52894 * 108.50884 * 52.15108 * 17 16 15 19 19 C 1.50726 * 109.96053 * 50.38279 * 18 17 16 20 20 C 1.38674 * 118.48833 * 163.12593 * 19 18 17 21 21 C 1.38040 * 120.34886 * 179.86405 * 20 19 18 22 22 C 1.38264 * 119.82568 * 359.94839 * 21 20 19 23 23 N 1.48015 * 120.06537 * 180.02562 * 22 21 20 24 24 O 1.21798 * 119.99801 * 0.02562 * 23 22 21 25 25 O 1.21803 * 120.00069 * 180.02562 * 23 22 21 26 26 C 1.38020 * 119.86728 * 0.07778 * 22 21 20 27 27 C 1.37827 * 121.65927 * 343.10506 * 19 18 17 28 28 C 1.46638 * 110.99966 * 292.98388 * 16 15 14 29 29 H 1.08999 * 109.46908 * 269.99915 * 1 2 3 30 30 H 1.09000 * 109.47065 * 29.99364 * 1 2 3 31 31 H 1.08990 * 109.47304 * 149.99656 * 1 2 3 32 32 H 1.09004 * 109.46561 * 30.00494 * 3 2 1 33 33 H 1.08998 * 109.47073 * 150.00154 * 3 2 1 34 34 H 0.97000 * 119.99819 * 180.02562 * 7 6 4 35 35 H 1.09001 * 109.46665 * 60.00498 * 14 12 2 36 36 H 1.08993 * 109.47304 * 300.00054 * 14 12 2 37 37 H 1.09001 * 109.46801 * 300.00442 * 15 14 12 38 38 H 1.09001 * 109.46998 * 60.00038 * 15 14 12 39 39 H 1.09001 * 109.62912 * 171.85792 * 17 16 15 40 40 H 1.08996 * 109.63029 * 292.44903 * 17 16 15 41 41 H 1.09000 * 109.39079 * 170.52913 * 18 17 16 42 42 H 1.09003 * 109.39384 * 290.33580 * 18 17 16 43 43 H 1.07996 * 119.83310 * 359.84170 * 20 19 18 44 44 H 1.07994 * 120.08892 * 179.97438 * 21 20 19 45 45 H 1.08000 * 119.80617 * 179.97438 * 26 22 21 46 46 H 1.08998 * 109.29655 * 49.45389 * 28 16 15 47 47 H 1.08992 * 109.29952 * 168.83333 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7039 -1.4208 5 1 2.0980 1.0959 -2.2417 6 6 3.1261 2.8780 -1.6726 7 7 3.5526 3.6185 -0.6730 8 14 3.4379 3.4170 -3.4338 9 1 2.1407 3.5938 -4.1345 10 1 4.1794 4.7037 -3.4338 11 1 4.2413 2.3822 -4.1332 12 6 2.1388 -1.1672 -0.0005 13 8 3.3516 -1.1672 -0.0001 14 6 1.3853 -2.4723 -0.0005 15 6 2.3795 -3.6353 -0.0005 16 7 1.6449 -4.9074 -0.0011 17 6 2.5531 -6.0406 -0.2397 18 6 3.7115 -5.9518 0.7542 19 6 3.1774 -5.7738 2.1524 20 6 4.0247 -6.0248 3.2211 21 6 3.5764 -5.8713 4.5176 22 6 2.2760 -5.4639 4.7519 23 7 1.7899 -5.2970 6.1400 24 8 2.5358 -5.5181 7.0771 25 8 0.6440 -4.9386 6.3450 26 6 1.4318 -5.2143 3.6889 27 6 1.8800 -5.3710 2.3853 28 6 0.9188 -5.0956 1.2589 29 1 -0.3633 0.0000 1.0277 30 1 -0.3633 0.8900 -0.5137 31 1 -0.3633 -0.8899 -0.5138 32 1 1.6085 2.0283 0.5139 33 1 3.1500 1.1383 0.5138 34 1 4.0289 4.4448 -0.8502 35 1 0.7584 -2.5298 -0.8904 36 1 0.7590 -2.5302 0.8896 37 1 3.0062 -3.5775 -0.8905 38 1 3.0062 -3.5776 0.8895 39 1 2.0158 -6.9776 -0.0930 40 1 2.9395 -5.9922 -1.2577 41 1 4.3008 -6.8675 0.7059 42 1 4.3432 -5.1010 0.4988 43 1 5.0405 -6.3425 3.0382 44 1 4.2397 -6.0683 5.3468 45 1 0.4162 -4.8966 3.8730 46 1 0.3484 -4.1944 1.4839 47 1 0.2329 -5.9365 1.1573 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092800678.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:17 Heat of formation + Delta-G solvation = -6.103835 kcal Electronic energy + Delta-G solvation = -30468.079444 eV Core-core repulsion = 26233.134887 eV Total energy + Delta-G solvation = -4234.944557 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.42463 -41.08886 -39.09489 -37.81812 -36.77204 -34.87454 -33.74975 -32.75857 -32.44564 -31.22607 -29.83753 -27.85986 -26.84900 -26.08844 -25.36396 -23.94056 -23.17074 -22.91882 -22.05373 -20.15073 -18.95591 -18.83636 -18.35841 -17.73888 -16.94842 -16.59842 -16.35009 -16.11500 -15.83059 -15.55323 -15.11276 -15.05088 -14.67325 -14.38964 -14.28482 -14.11233 -13.49507 -13.21869 -12.97803 -12.63895 -12.41509 -12.32651 -12.22169 -12.03329 -11.99025 -11.82023 -11.76551 -11.68783 -11.51254 -11.34588 -11.23719 -11.16596 -10.97318 -10.85169 -10.57942 -10.18863 -9.72184 -9.67694 -9.47009 -8.96908 -8.75694 -8.46204 -7.68639 -6.06982 -4.12187 -0.45020 0.50789 1.05003 1.15784 2.82044 3.29323 3.32829 3.34149 3.40144 3.42787 3.89693 3.96909 4.04139 4.08900 4.30254 4.41711 4.45644 4.60571 4.63439 4.77597 4.88929 5.03509 5.08590 5.11762 5.15882 5.23635 5.27164 5.28409 5.32728 5.35555 5.45671 5.55579 5.59086 5.69409 5.75816 5.87880 5.91904 5.94987 5.98789 6.19158 6.19234 6.63542 6.68190 7.01927 7.40288 7.41699 7.49784 7.88904 8.20184 8.37478 8.86301 9.04276 9.52977 11.01112 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012961 B = 0.002508 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2159.861665 B =11161.943721 C =12036.899144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.602 5.602 3 C 0.245 3.755 4 C -0.527 4.527 5 H 0.057 0.943 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.504 3.496 13 O -0.546 6.546 14 C -0.137 4.137 15 C 0.064 3.936 16 N -0.524 5.524 17 C 0.053 3.947 18 C -0.131 4.131 19 C -0.021 4.021 20 C -0.116 4.116 21 C -0.057 4.057 22 C -0.048 4.048 23 N 0.030 4.970 24 O -0.164 6.164 25 O -0.160 6.160 26 C -0.046 4.046 27 C -0.110 4.110 28 C 0.086 3.914 29 H 0.043 0.957 30 H 0.074 0.926 31 H 0.059 0.941 32 H 0.032 0.968 33 H 0.042 0.958 34 H 0.264 0.736 35 H 0.097 0.903 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.048 0.952 39 H 0.081 0.919 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.098 0.902 43 H 0.147 0.853 44 H 0.153 0.847 45 H 0.154 0.846 46 H 0.098 0.902 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.964 -23.737 5.099 24.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.334 5.334 3 C 0.126 3.874 4 C -0.566 4.566 5 H 0.075 0.925 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.202 1.202 12 C 0.290 3.710 13 O -0.425 6.425 14 C -0.177 4.177 15 C -0.064 4.064 16 N -0.245 5.245 17 C -0.075 4.075 18 C -0.170 4.170 19 C -0.021 4.021 20 C -0.134 4.134 21 C -0.076 4.076 22 C -0.131 4.131 23 N 0.549 4.451 24 O -0.379 6.379 25 O -0.377 6.377 26 C -0.066 4.066 27 C -0.113 4.113 28 C -0.043 4.043 29 H 0.062 0.938 30 H 0.093 0.907 31 H 0.077 0.923 32 H 0.050 0.950 33 H 0.060 0.940 34 H 0.074 0.926 35 H 0.116 0.884 36 H 0.101 0.899 37 H 0.106 0.894 38 H 0.066 0.934 39 H 0.100 0.900 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.117 0.883 43 H 0.165 0.835 44 H 0.170 0.830 45 H 0.172 0.828 46 H 0.116 0.884 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.354 -23.579 4.063 24.320 hybrid contribution 0.626 0.536 0.276 0.869 sum -3.728 -23.043 4.339 23.742 Atomic orbital electron populations 1.21650 0.81383 1.02714 1.00397 1.48162 1.06232 1.07885 1.71114 1.19281 0.92503 0.78116 0.97505 1.21385 1.36670 1.06305 0.92240 0.92517 1.24944 0.95342 0.96373 0.97466 1.69926 1.38325 1.14329 1.30822 0.86552 0.78383 0.77831 0.84612 1.20214 1.21150 1.20179 1.20251 0.88057 0.85147 0.77533 1.90662 1.13979 1.87370 1.50478 1.21662 0.99258 0.92797 1.03987 1.21946 0.94982 0.86594 1.02829 1.62635 1.28329 1.02703 1.30797 1.22282 0.91788 0.94281 0.99177 1.21381 1.00362 1.04398 0.90811 1.20084 0.92675 0.92755 0.96606 1.21174 1.00765 1.01063 0.90429 1.20994 0.92944 0.94638 0.99027 1.21039 0.96878 1.13831 0.81334 1.43617 1.00523 0.97675 1.03248 1.94534 1.54116 1.53946 1.35296 1.94545 1.03452 1.48388 1.91269 1.20988 1.00520 0.94807 0.90270 1.20490 0.95806 1.00122 0.94888 1.21327 0.94583 1.03639 0.84735 0.93805 0.90745 0.92269 0.95044 0.93950 0.92628 0.88449 0.89928 0.89377 0.93390 0.90029 0.89000 0.88978 0.88348 0.83536 0.82955 0.82837 0.88361 0.88361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.27 10.24 59.85 0.61 1.88 16 2 N -0.60 -12.52 2.86 -182.96 -0.52 -13.04 16 3 C 0.25 6.41 5.16 -5.19 -0.03 6.38 16 4 C -0.53 -14.89 9.38 -34.44 -0.32 -15.22 16 5 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 7 N -0.90 -26.63 13.29 55.43 0.74 -25.89 16 8 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 9 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 C 0.50 10.01 7.67 -10.99 -0.08 9.92 16 13 O -0.55 -13.23 15.56 5.56 0.09 -13.15 16 14 C -0.14 -1.83 4.22 -27.88 -0.12 -1.95 16 15 C 0.06 0.78 3.21 -3.82 -0.01 0.76 16 16 N -0.52 -4.66 5.02 -236.19 -1.18 -5.85 16 17 C 0.05 0.36 6.02 -3.73 -0.02 0.34 16 18 C -0.13 -0.90 5.17 -27.92 -0.14 -1.04 16 19 C -0.02 -0.17 5.05 -104.60 -0.53 -0.70 16 20 C -0.12 -0.88 9.66 -39.49 -0.38 -1.27 16 21 C -0.06 -0.51 9.56 -39.64 -0.38 -0.89 16 22 C -0.05 -0.51 6.85 -80.02 -0.55 -1.06 16 23 N 0.03 0.39 4.45 33.93 0.15 0.54 16 24 O -0.16 -2.20 18.46 -29.46 -0.54 -2.75 16 25 O -0.16 -2.18 18.45 -29.46 -0.54 -2.72 16 26 C -0.05 -0.43 9.17 -39.48 -0.36 -0.80 16 27 C -0.11 -0.95 5.19 -104.63 -0.54 -1.50 16 28 C 0.09 0.66 5.43 -5.16 -0.03 0.63 16 29 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 31 H 0.06 0.72 6.44 -51.93 -0.33 0.39 16 32 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 33 H 0.04 1.25 7.42 -51.93 -0.39 0.87 16 34 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 35 H 0.10 1.19 7.40 -51.93 -0.38 0.81 16 36 H 0.08 0.94 6.35 -51.93 -0.33 0.61 16 37 H 0.09 1.18 8.04 -51.93 -0.42 0.76 16 38 H 0.05 0.65 5.87 -51.93 -0.30 0.35 16 39 H 0.08 0.46 8.05 -51.93 -0.42 0.04 16 40 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.10 0.81 7.06 -51.93 -0.37 0.45 16 43 H 0.15 0.75 8.06 -52.49 -0.42 0.33 16 44 H 0.15 1.15 7.62 -52.49 -0.40 0.75 16 45 H 0.15 1.25 7.60 -52.49 -0.40 0.85 16 46 H 0.10 0.74 6.09 -51.93 -0.32 0.42 16 47 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 387.20 15.07 5.84 5.84 Total: -1.00 -34.82 387.20 -10.54 -45.36 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: -6.55 Total: -2.19 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: -2.99 Total: -2.85 kcal Atomic # 7 Polarization: -43.41 SS G_CDS: -0.82 Total: -44.23 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: -1.00 Total: -18.62 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.82 -10.54 -45.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092800678.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.256 kcal (2) G-P(sol) polarization free energy of solvation -34.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds