Wall clock time and date at job start Wed Apr 1 2020 04:28:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46497 * 1
3 3 C 1.46504 * 120.00463 * 2 1
4 4 C 1.50697 * 109.47527 * 270.00600 * 3 2 1
5 5 H 1.08009 * 119.99486 * 359.97438 * 4 3 2
6 6 C 1.37868 * 120.00223 * 179.97438 * 4 3 2
7 7 N 1.31519 * 120.00106 * 359.97438 * 6 4 3
8 8 Si 1.86805 * 120.00029 * 179.97438 * 6 4 3
9 9 H 1.48498 * 109.47346 * 59.99815 * 8 6 4
10 10 H 1.48503 * 109.47098 * 179.97438 * 8 6 4
11 11 H 1.48507 * 109.46814 * 299.99771 * 8 6 4
12 12 C 1.34776 * 119.99801 * 180.02562 * 2 1 3
13 13 O 1.21282 * 119.99940 * 180.02562 * 12 2 1
14 14 C 1.50698 * 120.00035 * 359.97438 * 12 2 1
15 15 C 1.53006 * 109.47184 * 180.02562 * 14 12 2
16 16 N 1.46898 * 109.47006 * 180.02562 * 15 14 12
17 17 C 1.47165 * 110.99790 * 170.00332 * 16 15 14
18 18 C 1.52894 * 108.50884 * 52.15108 * 17 16 15
19 19 C 1.50726 * 109.96053 * 50.38279 * 18 17 16
20 20 C 1.38674 * 118.48833 * 163.12593 * 19 18 17
21 21 C 1.38040 * 120.34886 * 179.86405 * 20 19 18
22 22 C 1.38264 * 119.82568 * 359.94839 * 21 20 19
23 23 N 1.48015 * 120.06537 * 180.02562 * 22 21 20
24 24 O 1.21798 * 119.99801 * 0.02562 * 23 22 21
25 25 O 1.21803 * 120.00069 * 180.02562 * 23 22 21
26 26 C 1.38020 * 119.86728 * 0.07778 * 22 21 20
27 27 C 1.37827 * 121.65927 * 343.10506 * 19 18 17
28 28 C 1.46638 * 110.99966 * 292.98388 * 16 15 14
29 29 H 1.08999 * 109.46908 * 269.99915 * 1 2 3
30 30 H 1.09000 * 109.47065 * 29.99364 * 1 2 3
31 31 H 1.08990 * 109.47304 * 149.99656 * 1 2 3
32 32 H 1.09004 * 109.46561 * 30.00494 * 3 2 1
33 33 H 1.08998 * 109.47073 * 150.00154 * 3 2 1
34 34 H 0.97000 * 119.99819 * 180.02562 * 7 6 4
35 35 H 1.09001 * 109.46665 * 60.00498 * 14 12 2
36 36 H 1.08993 * 109.47304 * 300.00054 * 14 12 2
37 37 H 1.09001 * 109.46801 * 300.00442 * 15 14 12
38 38 H 1.09001 * 109.46998 * 60.00038 * 15 14 12
39 39 H 1.09001 * 109.62912 * 171.85792 * 17 16 15
40 40 H 1.08996 * 109.63029 * 292.44903 * 17 16 15
41 41 H 1.09000 * 109.39079 * 170.52913 * 18 17 16
42 42 H 1.09003 * 109.39384 * 290.33580 * 18 17 16
43 43 H 1.07996 * 119.83310 * 359.84170 * 20 19 18
44 44 H 1.07994 * 120.08892 * 179.97438 * 21 20 19
45 45 H 1.08000 * 119.80617 * 179.97438 * 26 22 21
46 46 H 1.08998 * 109.29655 * 49.45389 * 28 16 15
47 47 H 1.08992 * 109.29952 * 168.83333 * 28 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1976 1.2687 0.0000
4 6 2.4487 1.7039 -1.4208
5 1 2.0980 1.0959 -2.2417
6 6 3.1261 2.8780 -1.6726
7 7 3.5526 3.6185 -0.6730
8 14 3.4379 3.4170 -3.4338
9 1 2.1407 3.5938 -4.1345
10 1 4.1794 4.7037 -3.4338
11 1 4.2413 2.3822 -4.1332
12 6 2.1388 -1.1672 -0.0005
13 8 3.3516 -1.1672 -0.0001
14 6 1.3853 -2.4723 -0.0005
15 6 2.3795 -3.6353 -0.0005
16 7 1.6449 -4.9074 -0.0011
17 6 2.5531 -6.0406 -0.2397
18 6 3.7115 -5.9518 0.7542
19 6 3.1774 -5.7738 2.1524
20 6 4.0247 -6.0248 3.2211
21 6 3.5764 -5.8713 4.5176
22 6 2.2760 -5.4639 4.7519
23 7 1.7899 -5.2970 6.1400
24 8 2.5358 -5.5181 7.0771
25 8 0.6440 -4.9386 6.3450
26 6 1.4318 -5.2143 3.6889
27 6 1.8800 -5.3710 2.3853
28 6 0.9188 -5.0956 1.2589
29 1 -0.3633 0.0000 1.0277
30 1 -0.3633 0.8900 -0.5137
31 1 -0.3633 -0.8899 -0.5138
32 1 1.6085 2.0283 0.5139
33 1 3.1500 1.1383 0.5138
34 1 4.0289 4.4448 -0.8502
35 1 0.7584 -2.5298 -0.8904
36 1 0.7590 -2.5302 0.8896
37 1 3.0062 -3.5775 -0.8905
38 1 3.0062 -3.5776 0.8895
39 1 2.0158 -6.9776 -0.0930
40 1 2.9395 -5.9922 -1.2577
41 1 4.3008 -6.8675 0.7059
42 1 4.3432 -5.1010 0.4988
43 1 5.0405 -6.3425 3.0382
44 1 4.2397 -6.0683 5.3468
45 1 0.4162 -4.8966 3.8730
46 1 0.3484 -4.1944 1.4839
47 1 0.2329 -5.9365 1.1573
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000092800678.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:28:17
Heat of formation + Delta-G solvation = -6.103835 kcal
Electronic energy + Delta-G solvation = -30468.079444 eV
Core-core repulsion = 26233.134887 eV
Total energy + Delta-G solvation = -4234.944557 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.168 amu
Computer time = 0.99 seconds
Orbital eigenvalues (eV)
-42.42463 -41.08886 -39.09489 -37.81812 -36.77204 -34.87454 -33.74975 -32.75857
-32.44564 -31.22607 -29.83753 -27.85986 -26.84900 -26.08844 -25.36396 -23.94056
-23.17074 -22.91882 -22.05373 -20.15073 -18.95591 -18.83636 -18.35841 -17.73888
-16.94842 -16.59842 -16.35009 -16.11500 -15.83059 -15.55323 -15.11276 -15.05088
-14.67325 -14.38964 -14.28482 -14.11233 -13.49507 -13.21869 -12.97803 -12.63895
-12.41509 -12.32651 -12.22169 -12.03329 -11.99025 -11.82023 -11.76551 -11.68783
-11.51254 -11.34588 -11.23719 -11.16596 -10.97318 -10.85169 -10.57942 -10.18863
-9.72184 -9.67694 -9.47009 -8.96908 -8.75694 -8.46204 -7.68639 -6.06982
-4.12187 -0.45020 0.50789 1.05003 1.15784 2.82044 3.29323 3.32829
3.34149 3.40144 3.42787 3.89693 3.96909 4.04139 4.08900 4.30254
4.41711 4.45644 4.60571 4.63439 4.77597 4.88929 5.03509 5.08590
5.11762 5.15882 5.23635 5.27164 5.28409 5.32728 5.35555 5.45671
5.55579 5.59086 5.69409 5.75816 5.87880 5.91904 5.94987 5.98789
6.19158 6.19234 6.63542 6.68190 7.01927 7.40288 7.41699 7.49784
7.88904 8.20184 8.37478 8.86301 9.04276 9.52977 11.01112
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.012961 B = 0.002508 C = 0.002326
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2159.861665 B =11161.943721 C =12036.899144
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.083 3.917
2 N -0.602 5.602
3 C 0.245 3.755
4 C -0.527 4.527
5 H 0.057 0.943
6 C 0.061 3.939
7 N -0.895 5.895
8 Si 0.899 3.101
9 H -0.277 1.277
10 H -0.286 1.286
11 H -0.276 1.276
12 C 0.504 3.496
13 O -0.546 6.546
14 C -0.137 4.137
15 C 0.064 3.936
16 N -0.524 5.524
17 C 0.053 3.947
18 C -0.131 4.131
19 C -0.021 4.021
20 C -0.116 4.116
21 C -0.057 4.057
22 C -0.048 4.048
23 N 0.030 4.970
24 O -0.164 6.164
25 O -0.160 6.160
26 C -0.046 4.046
27 C -0.110 4.110
28 C 0.086 3.914
29 H 0.043 0.957
30 H 0.074 0.926
31 H 0.059 0.941
32 H 0.032 0.968
33 H 0.042 0.958
34 H 0.264 0.736
35 H 0.097 0.903
36 H 0.082 0.918
37 H 0.088 0.912
38 H 0.048 0.952
39 H 0.081 0.919
40 H 0.092 0.908
41 H 0.092 0.908
42 H 0.098 0.902
43 H 0.147 0.853
44 H 0.153 0.847
45 H 0.154 0.846
46 H 0.098 0.902
47 H 0.098 0.902
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.964 -23.737 5.099 24.781
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.061 4.061
2 N -0.334 5.334
3 C 0.126 3.874
4 C -0.566 4.566
5 H 0.075 0.925
6 C -0.141 4.141
7 N -0.534 5.534
8 Si 0.726 3.274
9 H -0.202 1.202
10 H -0.212 1.212
11 H -0.202 1.202
12 C 0.290 3.710
13 O -0.425 6.425
14 C -0.177 4.177
15 C -0.064 4.064
16 N -0.245 5.245
17 C -0.075 4.075
18 C -0.170 4.170
19 C -0.021 4.021
20 C -0.134 4.134
21 C -0.076 4.076
22 C -0.131 4.131
23 N 0.549 4.451
24 O -0.379 6.379
25 O -0.377 6.377
26 C -0.066 4.066
27 C -0.113 4.113
28 C -0.043 4.043
29 H 0.062 0.938
30 H 0.093 0.907
31 H 0.077 0.923
32 H 0.050 0.950
33 H 0.060 0.940
34 H 0.074 0.926
35 H 0.116 0.884
36 H 0.101 0.899
37 H 0.106 0.894
38 H 0.066 0.934
39 H 0.100 0.900
40 H 0.110 0.890
41 H 0.110 0.890
42 H 0.117 0.883
43 H 0.165 0.835
44 H 0.170 0.830
45 H 0.172 0.828
46 H 0.116 0.884
47 H 0.116 0.884
Dipole moment (debyes) X Y Z Total
from point charges -4.354 -23.579 4.063 24.320
hybrid contribution 0.626 0.536 0.276 0.869
sum -3.728 -23.043 4.339 23.742
Atomic orbital electron populations
1.21650 0.81383 1.02714 1.00397 1.48162 1.06232 1.07885 1.71114
1.19281 0.92503 0.78116 0.97505 1.21385 1.36670 1.06305 0.92240
0.92517 1.24944 0.95342 0.96373 0.97466 1.69926 1.38325 1.14329
1.30822 0.86552 0.78383 0.77831 0.84612 1.20214 1.21150 1.20179
1.20251 0.88057 0.85147 0.77533 1.90662 1.13979 1.87370 1.50478
1.21662 0.99258 0.92797 1.03987 1.21946 0.94982 0.86594 1.02829
1.62635 1.28329 1.02703 1.30797 1.22282 0.91788 0.94281 0.99177
1.21381 1.00362 1.04398 0.90811 1.20084 0.92675 0.92755 0.96606
1.21174 1.00765 1.01063 0.90429 1.20994 0.92944 0.94638 0.99027
1.21039 0.96878 1.13831 0.81334 1.43617 1.00523 0.97675 1.03248
1.94534 1.54116 1.53946 1.35296 1.94545 1.03452 1.48388 1.91269
1.20988 1.00520 0.94807 0.90270 1.20490 0.95806 1.00122 0.94888
1.21327 0.94583 1.03639 0.84735 0.93805 0.90745 0.92269 0.95044
0.93950 0.92628 0.88449 0.89928 0.89377 0.93390 0.90029 0.89000
0.88978 0.88348 0.83536 0.82955 0.82837 0.88361 0.88361
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 1.27 10.24 59.85 0.61 1.88 16
2 N -0.60 -12.52 2.86 -182.96 -0.52 -13.04 16
3 C 0.25 6.41 5.16 -5.19 -0.03 6.38 16
4 C -0.53 -14.89 9.38 -34.44 -0.32 -15.22 16
5 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16
6 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16
7 N -0.90 -26.63 13.29 55.43 0.74 -25.89 16
8 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16
9 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16
10 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16
11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16
12 C 0.50 10.01 7.67 -10.99 -0.08 9.92 16
13 O -0.55 -13.23 15.56 5.56 0.09 -13.15 16
14 C -0.14 -1.83 4.22 -27.88 -0.12 -1.95 16
15 C 0.06 0.78 3.21 -3.82 -0.01 0.76 16
16 N -0.52 -4.66 5.02 -236.19 -1.18 -5.85 16
17 C 0.05 0.36 6.02 -3.73 -0.02 0.34 16
18 C -0.13 -0.90 5.17 -27.92 -0.14 -1.04 16
19 C -0.02 -0.17 5.05 -104.60 -0.53 -0.70 16
20 C -0.12 -0.88 9.66 -39.49 -0.38 -1.27 16
21 C -0.06 -0.51 9.56 -39.64 -0.38 -0.89 16
22 C -0.05 -0.51 6.85 -80.02 -0.55 -1.06 16
23 N 0.03 0.39 4.45 33.93 0.15 0.54 16
24 O -0.16 -2.20 18.46 -29.46 -0.54 -2.75 16
25 O -0.16 -2.18 18.45 -29.46 -0.54 -2.72 16
26 C -0.05 -0.43 9.17 -39.48 -0.36 -0.80 16
27 C -0.11 -0.95 5.19 -104.63 -0.54 -1.50 16
28 C 0.09 0.66 5.43 -5.16 -0.03 0.63 16
29 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16
30 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16
31 H 0.06 0.72 6.44 -51.93 -0.33 0.39 16
32 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16
33 H 0.04 1.25 7.42 -51.93 -0.39 0.87 16
34 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16
35 H 0.10 1.19 7.40 -51.93 -0.38 0.81 16
36 H 0.08 0.94 6.35 -51.93 -0.33 0.61 16
37 H 0.09 1.18 8.04 -51.93 -0.42 0.76 16
38 H 0.05 0.65 5.87 -51.93 -0.30 0.35 16
39 H 0.08 0.46 8.05 -51.93 -0.42 0.04 16
40 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16
41 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16
42 H 0.10 0.81 7.06 -51.93 -0.37 0.45 16
43 H 0.15 0.75 8.06 -52.49 -0.42 0.33 16
44 H 0.15 1.15 7.62 -52.49 -0.40 0.75 16
45 H 0.15 1.25 7.60 -52.49 -0.40 0.85 16
46 H 0.10 0.74 6.09 -51.93 -0.32 0.42 16
47 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16
LS Contribution 387.20 15.07 5.84 5.84
Total: -1.00 -34.82 387.20 -10.54 -45.36
By element:
Atomic # 1 Polarization: 4.36 SS G_CDS: -6.55 Total: -2.19 kcal
Atomic # 6 Polarization: 0.13 SS G_CDS: -2.99 Total: -2.85 kcal
Atomic # 7 Polarization: -43.41 SS G_CDS: -0.82 Total: -44.23 kcal
Atomic # 8 Polarization: -17.62 SS G_CDS: -1.00 Total: -18.62 kcal
Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal
Total LS contribution 5.84 Total: 5.84 kcal
Total: -34.82 -10.54 -45.36 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000092800678.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 39.256 kcal
(2) G-P(sol) polarization free energy of solvation -34.816 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.440 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.544 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.360 kcal
(6) G-S(sol) free energy of system = (1) + (5) -6.104 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.99 seconds