Wall clock time and date at job start Wed Apr 1 2020 04:28:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46504 * 120.00463 * 2 1 4 4 C 1.50697 * 109.47527 * 270.00600 * 3 2 1 5 5 H 1.08009 * 119.99486 * 359.97438 * 4 3 2 6 6 C 1.37868 * 120.00223 * 179.97438 * 4 3 2 7 7 N 1.31519 * 120.00106 * 359.97438 * 6 4 3 8 8 Si 1.86805 * 120.00029 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.47346 * 59.99815 * 8 6 4 10 10 H 1.48503 * 109.47098 * 179.97438 * 8 6 4 11 11 H 1.48507 * 109.46814 * 299.99771 * 8 6 4 12 12 C 1.34776 * 119.99801 * 180.02562 * 2 1 3 13 13 O 1.21282 * 119.99940 * 180.02562 * 12 2 1 14 14 C 1.50698 * 120.00035 * 359.97438 * 12 2 1 15 15 C 1.53006 * 109.47184 * 180.02562 * 14 12 2 16 16 N 1.46898 * 109.47006 * 180.02562 * 15 14 12 17 17 C 1.47165 * 110.99790 * 170.00332 * 16 15 14 18 18 C 1.52894 * 108.50884 * 52.15108 * 17 16 15 19 19 C 1.50726 * 109.96053 * 50.38279 * 18 17 16 20 20 C 1.38674 * 118.48833 * 163.12593 * 19 18 17 21 21 C 1.38040 * 120.34886 * 179.86405 * 20 19 18 22 22 C 1.38264 * 119.82568 * 359.94839 * 21 20 19 23 23 N 1.48015 * 120.06537 * 180.02562 * 22 21 20 24 24 O 1.21798 * 119.99801 * 0.02562 * 23 22 21 25 25 O 1.21803 * 120.00069 * 180.02562 * 23 22 21 26 26 C 1.38020 * 119.86728 * 0.07778 * 22 21 20 27 27 C 1.37827 * 121.65927 * 343.10506 * 19 18 17 28 28 C 1.46638 * 110.99966 * 292.98388 * 16 15 14 29 29 H 1.08999 * 109.46908 * 269.99915 * 1 2 3 30 30 H 1.09000 * 109.47065 * 29.99364 * 1 2 3 31 31 H 1.08990 * 109.47304 * 149.99656 * 1 2 3 32 32 H 1.09004 * 109.46561 * 30.00494 * 3 2 1 33 33 H 1.08998 * 109.47073 * 150.00154 * 3 2 1 34 34 H 0.97000 * 119.99819 * 180.02562 * 7 6 4 35 35 H 1.09001 * 109.46665 * 60.00498 * 14 12 2 36 36 H 1.08993 * 109.47304 * 300.00054 * 14 12 2 37 37 H 1.09001 * 109.46801 * 300.00442 * 15 14 12 38 38 H 1.09001 * 109.46998 * 60.00038 * 15 14 12 39 39 H 1.09001 * 109.62912 * 171.85792 * 17 16 15 40 40 H 1.08996 * 109.63029 * 292.44903 * 17 16 15 41 41 H 1.09000 * 109.39079 * 170.52913 * 18 17 16 42 42 H 1.09003 * 109.39384 * 290.33580 * 18 17 16 43 43 H 1.07996 * 119.83310 * 359.84170 * 20 19 18 44 44 H 1.07994 * 120.08892 * 179.97438 * 21 20 19 45 45 H 1.08000 * 119.80617 * 179.97438 * 26 22 21 46 46 H 1.08998 * 109.29655 * 49.45389 * 28 16 15 47 47 H 1.08992 * 109.29952 * 168.83333 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7039 -1.4208 5 1 2.0980 1.0959 -2.2417 6 6 3.1261 2.8780 -1.6726 7 7 3.5526 3.6185 -0.6730 8 14 3.4379 3.4170 -3.4338 9 1 2.1407 3.5938 -4.1345 10 1 4.1794 4.7037 -3.4338 11 1 4.2413 2.3822 -4.1332 12 6 2.1388 -1.1672 -0.0005 13 8 3.3516 -1.1672 -0.0001 14 6 1.3853 -2.4723 -0.0005 15 6 2.3795 -3.6353 -0.0005 16 7 1.6449 -4.9074 -0.0011 17 6 2.5531 -6.0406 -0.2397 18 6 3.7115 -5.9518 0.7542 19 6 3.1774 -5.7738 2.1524 20 6 4.0247 -6.0248 3.2211 21 6 3.5764 -5.8713 4.5176 22 6 2.2760 -5.4639 4.7519 23 7 1.7899 -5.2970 6.1400 24 8 2.5358 -5.5181 7.0771 25 8 0.6440 -4.9386 6.3450 26 6 1.4318 -5.2143 3.6889 27 6 1.8800 -5.3710 2.3853 28 6 0.9188 -5.0956 1.2589 29 1 -0.3633 0.0000 1.0277 30 1 -0.3633 0.8900 -0.5137 31 1 -0.3633 -0.8899 -0.5138 32 1 1.6085 2.0283 0.5139 33 1 3.1500 1.1383 0.5138 34 1 4.0289 4.4448 -0.8502 35 1 0.7584 -2.5298 -0.8904 36 1 0.7590 -2.5302 0.8896 37 1 3.0062 -3.5775 -0.8905 38 1 3.0062 -3.5776 0.8895 39 1 2.0158 -6.9776 -0.0930 40 1 2.9395 -5.9922 -1.2577 41 1 4.3008 -6.8675 0.7059 42 1 4.3432 -5.1010 0.4988 43 1 5.0405 -6.3425 3.0382 44 1 4.2397 -6.0683 5.3468 45 1 0.4162 -4.8966 3.8730 46 1 0.3484 -4.1944 1.4839 47 1 0.2329 -5.9365 1.1573 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092800678.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:16 Heat of formation + Delta-G solvation = -28.233089 kcal Electronic energy + Delta-G solvation = -30469.039040 eV Core-core repulsion = 26233.134887 eV Total energy + Delta-G solvation = -4235.904153 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.33768 -41.80454 -40.59014 -38.61236 -37.75102 -36.60275 -34.80471 -34.40469 -33.33777 -32.14064 -30.67942 -29.61938 -27.66892 -27.37930 -26.55305 -25.09768 -24.09307 -23.80017 -23.20864 -20.98023 -20.06497 -19.86241 -19.42563 -18.71312 -18.68077 -18.04572 -17.24070 -17.16606 -16.98015 -16.59763 -16.46584 -15.90858 -15.71782 -15.53258 -15.36784 -14.90523 -14.56020 -14.21727 -14.00815 -13.80567 -13.74002 -13.46360 -13.42490 -13.24779 -13.02681 -12.94573 -12.83570 -12.73685 -12.66894 -12.61847 -12.41748 -12.37721 -12.33978 -12.20075 -11.91180 -11.79389 -11.72109 -10.65923 -10.61342 -10.37777 -10.11884 -9.47857 -9.42233 -8.23804 -6.39398 -1.31068 -0.13290 0.21001 0.31589 1.36035 1.40129 1.47715 1.84063 2.14842 2.27364 2.41281 2.91660 3.05681 3.24525 3.37382 3.45717 3.68403 3.78585 3.80548 3.93217 4.06616 4.10564 4.12601 4.26589 4.38599 4.47543 4.48310 4.59680 4.60362 4.64185 4.71216 4.73646 4.83129 4.86795 4.94335 4.95398 5.00189 5.04115 5.04990 5.10848 5.19551 5.21908 5.45085 5.54423 5.82491 5.91722 5.98307 6.04146 6.41093 6.68142 6.79235 7.26879 7.47973 8.83135 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012961 B = 0.002508 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2159.861665 B =11161.943721 C =12036.899144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.612 5.612 3 C 0.259 3.741 4 C -0.543 4.543 5 H 0.055 0.945 6 C 0.006 3.994 7 N -0.931 5.931 8 Si 0.969 3.031 9 H -0.259 1.259 10 H -0.279 1.279 11 H -0.276 1.276 12 C 0.493 3.507 13 O -0.601 6.601 14 C -0.120 4.120 15 C 0.075 3.925 16 N -0.519 5.519 17 C 0.050 3.950 18 C -0.128 4.128 19 C -0.024 4.024 20 C -0.113 4.113 21 C -0.063 4.063 22 C -0.069 4.069 23 N 0.032 4.968 24 O -0.184 6.184 25 O -0.180 6.180 26 C -0.050 4.050 27 C -0.114 4.114 28 C 0.084 3.916 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.099 0.901 32 H 0.020 0.980 33 H -0.006 1.006 34 H 0.267 0.733 35 H 0.120 0.880 36 H 0.111 0.889 37 H 0.070 0.930 38 H 0.029 0.971 39 H 0.103 0.897 40 H 0.096 0.904 41 H 0.119 0.881 42 H 0.082 0.918 43 H 0.173 0.827 44 H 0.161 0.839 45 H 0.163 0.837 46 H 0.103 0.897 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.278 -25.697 3.041 26.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.343 5.343 3 C 0.137 3.863 4 C -0.581 4.581 5 H 0.074 0.926 6 C -0.193 4.193 7 N -0.570 5.570 8 Si 0.793 3.207 9 H -0.183 1.183 10 H -0.205 1.205 11 H -0.201 1.201 12 C 0.282 3.718 13 O -0.484 6.484 14 C -0.159 4.159 15 C -0.054 4.054 16 N -0.240 5.240 17 C -0.077 4.077 18 C -0.166 4.166 19 C -0.025 4.025 20 C -0.132 4.132 21 C -0.082 4.082 22 C -0.152 4.152 23 N 0.546 4.454 24 O -0.397 6.397 25 O -0.394 6.394 26 C -0.070 4.070 27 C -0.116 4.116 28 C -0.044 4.044 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.118 0.882 32 H 0.038 0.962 33 H 0.013 0.987 34 H 0.076 0.924 35 H 0.138 0.862 36 H 0.129 0.871 37 H 0.089 0.911 38 H 0.047 0.953 39 H 0.121 0.879 40 H 0.114 0.886 41 H 0.137 0.863 42 H 0.100 0.900 43 H 0.191 0.809 44 H 0.179 0.821 45 H 0.180 0.820 46 H 0.121 0.879 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -5.732 -25.566 2.032 26.280 hybrid contribution 1.069 1.105 0.900 1.781 sum -4.664 -24.461 2.931 25.074 Atomic orbital electron populations 1.21947 0.77787 1.04222 1.02491 1.48210 1.08490 1.06446 1.71178 1.18722 0.90938 0.80581 0.96041 1.21679 1.36890 1.06573 0.92994 0.92648 1.25904 0.94883 0.96418 1.02119 1.70056 1.38956 1.14793 1.33234 0.85448 0.78913 0.77353 0.78993 1.18346 1.20455 1.20106 1.21429 0.87835 0.86766 0.75779 1.90629 1.16738 1.88293 1.52695 1.21614 0.99065 0.88980 1.06290 1.21700 0.94468 0.88027 1.01175 1.62627 1.28192 1.01757 1.31398 1.22421 0.91708 0.94184 0.99407 1.21396 1.00437 1.04958 0.89805 1.20397 0.92699 0.91873 0.97505 1.21500 1.01894 1.00162 0.89597 1.21234 0.92470 0.94408 1.00061 1.21270 0.98027 1.15847 0.80069 1.43950 1.00247 0.97070 1.04132 1.94511 1.54109 1.54681 1.36375 1.94518 1.03991 1.49131 1.91755 1.21153 1.00871 0.94675 0.90261 1.20666 0.96320 0.99902 0.94762 1.21480 0.94379 1.04902 0.83622 0.91369 0.91755 0.88246 0.96205 0.98741 0.92403 0.86167 0.87064 0.91116 0.95302 0.87891 0.88551 0.86306 0.90017 0.80916 0.82104 0.81973 0.87943 0.85865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.21 10.24 127.77 1.31 3.52 16 2 N -0.61 -25.47 2.86 -851.15 -2.43 -27.90 16 3 C 0.26 14.07 5.16 85.63 0.44 14.51 16 4 C -0.54 -31.29 9.38 25.60 0.24 -31.05 16 5 H 0.06 3.13 7.81 -2.91 -0.02 3.10 16 6 C 0.01 0.32 5.46 84.65 0.46 0.78 16 7 N -0.93 -56.75 13.29 21.44 0.28 -56.46 16 8 Si 0.97 44.63 29.54 68.60 2.03 46.66 16 9 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 10 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 11 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 12 C 0.49 19.54 7.67 87.66 0.67 20.22 16 13 O -0.60 -30.23 15.56 -3.04 -0.05 -30.28 16 14 C -0.12 -2.91 4.22 29.85 0.13 -2.79 16 15 C 0.07 1.69 3.21 86.31 0.28 1.97 16 16 N -0.52 -7.60 5.02 -901.16 -4.52 -12.12 16 17 C 0.05 0.53 6.02 86.22 0.52 1.05 16 18 C -0.13 -1.42 5.17 29.82 0.15 -1.27 16 19 C -0.02 -0.34 5.05 -19.85 -0.10 -0.44 16 20 C -0.11 -1.52 9.66 22.33 0.22 -1.30 16 21 C -0.06 -1.07 9.56 22.23 0.21 -0.85 16 22 C -0.07 -1.45 6.85 36.33 0.25 -1.20 16 23 N 0.03 0.84 4.45 -46.57 -0.21 0.63 16 24 O -0.18 -5.11 18.46 18.89 0.35 -4.76 16 25 O -0.18 -5.00 18.45 18.88 0.35 -4.65 16 26 C -0.05 -0.87 9.17 22.34 0.20 -0.67 16 27 C -0.11 -1.71 5.19 -19.87 -0.10 -1.81 16 28 C 0.08 1.00 5.43 85.58 0.46 1.47 16 29 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.06 1.97 8.07 -2.39 -0.02 1.95 16 31 H 0.10 2.02 6.44 -2.39 -0.02 2.01 16 32 H 0.02 1.10 8.07 -2.39 -0.02 1.08 16 33 H -0.01 -0.35 7.42 -2.39 -0.02 -0.37 16 34 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 35 H 0.12 2.46 7.40 -2.39 -0.02 2.44 16 36 H 0.11 2.11 6.35 -2.39 -0.02 2.10 16 37 H 0.07 1.85 8.04 -2.39 -0.02 1.83 16 38 H 0.03 0.76 5.87 -2.39 -0.01 0.75 16 39 H 0.10 0.71 8.05 -2.39 -0.02 0.69 16 40 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.08 1.25 7.06 -2.39 -0.02 1.23 16 43 H 0.17 1.32 8.06 -2.91 -0.02 1.29 16 44 H 0.16 2.35 7.62 -2.91 -0.02 2.33 16 45 H 0.16 2.43 7.60 -2.91 -0.02 2.41 16 46 H 0.10 1.15 6.09 -2.39 -0.01 1.14 16 47 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -80.36 387.20 2.14 -78.22 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: 0.99 Total: 8.54 kcal Atomic # 6 Polarization: -3.22 SS G_CDS: 5.34 Total: 2.13 kcal Atomic # 7 Polarization: -88.98 SS G_CDS: -6.87 Total: -95.86 kcal Atomic # 8 Polarization: -40.34 SS G_CDS: 0.65 Total: -39.69 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -80.36 2.14 -78.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092800678.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.989 kcal (2) G-P(sol) polarization free energy of solvation -80.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds