Wall clock time and date at job start Wed Apr 1 2020 04:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46498 * 119.99922 * 2 1 4 4 C 1.50701 * 109.47322 * 270.00347 * 3 2 1 5 5 H 1.08005 * 120.00015 * 359.97438 * 4 3 2 6 6 C 1.37872 * 120.00158 * 180.02562 * 4 3 2 7 7 N 1.31510 * 119.99986 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 120.00036 * 179.97438 * 6 4 3 9 9 H 1.48510 * 109.47104 * 59.99855 * 8 6 4 10 10 H 1.48504 * 109.47175 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47453 * 300.00028 * 8 6 4 12 12 C 1.34772 * 120.00113 * 180.02562 * 2 1 3 13 13 O 1.21590 * 120.00357 * 179.97438 * 12 2 1 14 14 N 1.34781 * 120.00051 * 359.97438 * 12 2 1 15 15 C 1.39976 * 119.99979 * 174.60745 * 14 12 2 16 16 C 1.38984 * 119.99958 * 146.73816 * 15 14 12 17 17 C 1.38214 * 120.22593 * 179.97438 * 16 15 14 18 18 C 1.38016 * 120.21791 * 359.76184 * 17 16 15 19 19 C 1.39572 * 119.99881 * 0.53058 * 18 17 16 20 20 C 1.47862 * 120.11498 * 179.71990 * 19 18 17 21 21 O 1.21552 * 120.00274 * 148.77917 * 20 19 18 22 22 N 1.34781 * 119.99576 * 328.78426 * 20 19 18 23 23 C 1.47164 * 120.94470 * 354.10425 * 22 20 19 24 24 C 1.53297 * 108.37434 * 230.51590 * 23 22 20 25 25 O 1.42963 * 109.26736 * 307.77443 * 24 23 22 26 26 C 1.42966 * 114.16155 * 62.55754 * 25 24 23 27 27 C 1.47155 * 120.97683 * 174.17336 * 22 20 19 28 28 C 1.38592 * 120.00147 * 326.75642 * 15 14 12 29 29 H 1.09006 * 109.46795 * 269.99583 * 1 2 3 30 30 H 1.08999 * 109.47288 * 29.99853 * 1 2 3 31 31 H 1.08999 * 109.46852 * 150.00007 * 1 2 3 32 32 H 1.08997 * 109.47014 * 30.00035 * 3 2 1 33 33 H 1.08996 * 109.47274 * 149.99892 * 3 2 1 34 34 H 0.97007 * 120.00034 * 180.02562 * 7 6 4 35 35 H 0.96997 * 119.99588 * 354.61018 * 14 12 2 36 36 H 1.08000 * 119.88531 * 359.97438 * 16 15 14 37 37 H 1.08001 * 119.88684 * 180.02562 * 17 16 15 38 38 H 1.08007 * 119.99687 * 180.25657 * 18 17 16 39 39 H 1.09003 * 109.64223 * 110.82283 * 23 22 20 40 40 H 1.08991 * 109.73115 * 350.26490 * 23 22 20 41 41 H 1.08999 * 109.51306 * 187.82798 * 24 23 22 42 42 H 1.09005 * 109.51351 * 67.72585 * 24 23 22 43 43 H 1.08992 * 109.51770 * 57.34244 * 26 25 24 44 44 H 1.09001 * 109.51004 * 177.44619 * 26 25 24 45 45 H 1.09005 * 109.68526 * 9.70763 * 27 22 20 46 46 H 1.08997 * 109.67849 * 249.15572 * 27 22 20 47 47 H 1.07998 * 120.10623 * 359.97438 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0981 1.0959 -2.2418 6 6 3.1268 2.8775 -1.6727 7 7 3.5542 3.6176 -0.6731 8 14 3.4387 3.4165 -3.4339 9 1 2.1413 3.5944 -4.1343 10 1 4.1811 4.7026 -3.4339 11 1 4.2410 2.3813 -4.1337 12 6 2.1389 -1.1671 -0.0005 13 8 3.3548 -1.1672 -0.0010 14 7 1.4651 -2.3344 -0.0005 15 6 2.1603 -3.5439 -0.1150 16 6 1.6898 -4.6799 0.5329 17 6 2.3723 -5.8767 0.4227 18 6 3.5229 -5.9529 -0.3356 19 6 4.0071 -4.8164 -0.9852 20 6 5.2430 -4.8936 -1.7932 21 8 5.3796 -4.1765 -2.7651 22 7 6.2181 -5.7593 -1.4520 23 6 6.1327 -6.5442 -0.2101 24 6 7.4499 -6.3804 0.5567 25 8 8.5431 -6.6837 -0.3133 26 6 8.6544 -5.8103 -1.4396 27 6 7.3994 -5.9458 -2.3094 28 6 3.3180 -3.6086 -0.8741 29 1 -0.3633 -0.0001 1.0277 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3633 -0.8900 -0.5138 32 1 1.6084 2.0283 0.5138 33 1 3.1499 1.1384 0.5138 34 1 4.0310 4.4435 -0.8504 35 1 0.4983 -2.3362 0.0788 36 1 0.7878 -4.6272 1.1245 37 1 2.0015 -6.7562 0.9281 38 1 4.0511 -6.8909 -0.4227 39 1 5.9766 -7.5957 -0.4512 40 1 5.3055 -6.1802 0.3992 41 1 7.4627 -7.0609 1.4081 42 1 7.5402 -5.3532 0.9102 43 1 8.7484 -4.7808 -1.0942 44 1 9.5341 -6.0800 -2.0240 45 1 7.4101 -5.1854 -3.0903 46 1 7.3716 -6.9371 -2.7619 47 1 3.6852 -2.7269 -1.3784 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176552133.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:39 Heat of formation + Delta-G solvation = -44.325119 kcal Electronic energy + Delta-G solvation = -30725.142232 eV Core-core repulsion = 26488.540276 eV Total energy + Delta-G solvation = -4236.601956 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.91369 -40.07315 -38.71940 -37.90224 -35.28862 -34.90238 -34.37973 -32.58260 -32.00276 -31.00271 -29.60248 -28.13078 -27.66800 -25.86194 -24.70436 -24.00409 -23.40451 -22.20197 -21.72640 -19.85167 -19.53205 -18.09612 -17.33520 -16.88437 -16.55598 -16.46052 -16.28822 -15.82954 -15.80123 -15.37238 -15.22967 -14.87341 -14.76424 -14.34204 -14.08579 -13.84401 -13.63488 -13.47438 -13.18040 -12.95340 -12.71931 -12.48814 -12.21661 -12.15974 -11.92697 -11.86474 -11.59411 -11.54798 -11.19518 -10.96487 -10.91623 -10.56466 -10.44367 -10.30694 -10.14352 -9.82115 -9.67485 -9.38723 -8.98638 -8.75431 -8.42347 -8.08008 -7.65919 -6.03826 -4.08617 0.85968 1.34867 2.58981 2.75831 3.09656 3.34331 3.38613 3.43928 3.50181 3.61822 3.97684 4.25174 4.39066 4.42892 4.51766 4.64932 4.74854 4.79791 4.90341 4.93242 5.00993 5.09835 5.21668 5.30485 5.30855 5.38546 5.40305 5.44829 5.46962 5.54228 5.61336 5.78739 5.83722 6.07518 6.14481 6.19169 6.28242 6.37323 6.55024 6.74716 6.76778 7.08465 7.14090 7.30905 7.45129 7.61229 7.93300 8.04797 8.22131 8.49763 8.91336 9.16246 9.56873 11.04096 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010588 B = 0.003043 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2643.873138 B = 9200.470012 C =10969.590954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.610 5.610 3 C 0.260 3.740 4 C -0.529 4.529 5 H 0.057 0.943 6 C 0.063 3.937 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.275 1.275 12 C 0.695 3.305 13 O -0.565 6.565 14 N -0.696 5.696 15 C 0.180 3.820 16 C -0.134 4.134 17 C -0.106 4.106 18 C -0.129 4.129 19 C -0.115 4.115 20 C 0.566 3.434 21 O -0.523 6.523 22 N -0.616 5.616 23 C 0.058 3.942 24 C 0.044 3.956 25 O -0.381 6.381 26 C 0.047 3.953 27 C 0.078 3.922 28 C -0.063 4.063 29 H 0.046 0.954 30 H 0.080 0.920 31 H 0.051 0.949 32 H 0.035 0.965 33 H 0.045 0.955 34 H 0.264 0.736 35 H 0.404 0.596 36 H 0.128 0.872 37 H 0.130 0.870 38 H 0.133 0.867 39 H 0.079 0.921 40 H 0.115 0.885 41 H 0.107 0.893 42 H 0.059 0.941 43 H 0.059 0.941 44 H 0.107 0.893 45 H 0.104 0.896 46 H 0.076 0.924 47 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.085 -24.035 4.436 24.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.345 5.345 3 C 0.141 3.859 4 C -0.568 4.568 5 H 0.075 0.925 6 C -0.139 4.139 7 N -0.534 5.534 8 Si 0.725 3.275 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.201 1.201 12 C 0.397 3.603 13 O -0.441 6.441 14 N -0.346 5.346 15 C 0.083 3.917 16 C -0.155 4.155 17 C -0.125 4.125 18 C -0.148 4.148 19 C -0.119 4.119 20 C 0.355 3.645 21 O -0.399 6.399 22 N -0.351 5.351 23 C -0.065 4.065 24 C -0.033 4.033 25 O -0.300 6.300 26 C -0.031 4.031 27 C -0.044 4.044 28 C -0.085 4.085 29 H 0.064 0.936 30 H 0.099 0.901 31 H 0.070 0.930 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.241 0.759 36 H 0.146 0.854 37 H 0.148 0.852 38 H 0.151 0.849 39 H 0.097 0.903 40 H 0.132 0.868 41 H 0.125 0.875 42 H 0.078 0.922 43 H 0.077 0.923 44 H 0.125 0.875 45 H 0.122 0.878 46 H 0.094 0.906 47 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 0.086 -23.424 3.965 23.757 hybrid contribution -0.616 0.617 -0.934 1.278 sum -0.531 -22.807 3.030 23.013 Atomic orbital electron populations 1.21619 0.81568 1.02613 1.00425 1.47521 1.05813 1.06303 1.74906 1.19265 0.92363 0.76707 0.97580 1.21412 1.36745 1.06324 0.92304 0.92478 1.24911 0.95224 0.96337 0.97477 1.69919 1.38302 1.14384 1.30805 0.86563 0.78414 0.77853 0.84658 1.20244 1.21135 1.20053 1.15954 0.85603 0.80078 0.78644 1.90930 1.11287 1.85456 1.56379 1.43023 1.10079 1.03688 1.77786 1.17442 0.93665 0.85349 0.95221 1.21038 1.01879 0.92504 1.00102 1.20781 0.94950 0.97299 0.99457 1.21427 0.97301 0.97811 0.98275 1.19605 0.96324 0.94826 1.01105 1.18419 0.82868 0.78751 0.84438 1.90817 1.79644 1.41108 1.28287 1.47945 1.21201 1.42537 1.23420 1.23045 1.00368 0.96494 0.86591 1.23051 0.85563 1.02024 0.92709 1.87945 1.49404 1.55606 1.37014 1.23007 0.97609 0.94739 0.87712 1.22290 0.84501 1.03329 0.94318 1.21398 0.93866 0.97816 0.95385 0.93580 0.90139 0.93048 0.94698 0.93656 0.92633 0.75948 0.85401 0.85188 0.84920 0.90323 0.86767 0.87495 0.92229 0.92257 0.87526 0.87818 0.90601 0.83061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.24 10.16 59.85 0.61 1.85 16 2 N -0.61 -12.93 2.86 -188.74 -0.54 -13.47 16 3 C 0.26 6.82 5.16 -5.19 -0.03 6.79 16 4 C -0.53 -15.21 9.39 -34.44 -0.32 -15.53 16 5 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 6 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16 7 N -0.90 -26.82 13.29 55.43 0.74 -26.09 16 8 Si 0.90 22.39 29.54 -169.99 -5.02 17.37 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 12 C 0.70 14.81 8.01 -86.92 -0.70 14.12 16 13 O -0.56 -14.58 13.61 5.29 0.07 -14.51 16 14 N -0.70 -11.01 5.17 -14.25 -0.07 -11.08 16 15 C 0.18 2.73 6.28 -83.73 -0.53 2.20 16 16 C -0.13 -1.46 9.95 -39.31 -0.39 -1.85 16 17 C -0.11 -0.98 10.02 -39.67 -0.40 -1.38 16 18 C -0.13 -1.34 7.40 -39.17 -0.29 -1.63 16 19 C -0.11 -1.69 5.40 -104.99 -0.57 -2.26 16 20 C 0.57 8.98 7.44 -12.32 -0.09 8.89 16 21 O -0.52 -10.48 16.20 5.32 0.09 -10.39 16 22 N -0.62 -7.43 3.02 -173.37 -0.52 -7.95 16 23 C 0.06 0.50 4.87 -3.53 -0.02 0.48 16 24 C 0.04 0.37 6.98 37.31 0.26 0.63 16 25 O -0.38 -3.86 10.74 -35.23 -0.38 -4.24 16 26 C 0.05 0.44 6.98 37.31 0.26 0.70 16 27 C 0.08 0.82 6.65 -3.53 -0.02 0.80 16 28 C -0.06 -1.12 8.20 -38.98 -0.32 -1.44 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.08 1.26 8.07 -51.93 -0.42 0.85 16 31 H 0.05 0.62 6.45 -51.93 -0.33 0.28 16 32 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 33 H 0.05 1.34 7.42 -51.93 -0.39 0.96 16 34 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 35 H 0.40 4.84 6.63 -40.82 -0.27 4.57 16 36 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 37 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 38 H 0.13 1.02 5.55 -52.48 -0.29 0.73 16 39 H 0.08 0.53 7.92 -51.93 -0.41 0.11 16 40 H 0.11 0.95 4.51 -51.93 -0.23 0.71 16 41 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.10 1.24 7.06 -51.93 -0.37 0.87 16 46 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.15 3.37 6.29 -52.49 -0.33 3.04 16 LS Contribution 383.18 15.07 5.77 5.77 Total: -1.00 -37.77 383.18 -8.90 -46.66 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -6.39 Total: 3.82 kcal Atomic # 6 Polarization: 16.73 SS G_CDS: -2.64 Total: 14.09 kcal Atomic # 7 Polarization: -58.19 SS G_CDS: -0.40 Total: -58.59 kcal Atomic # 8 Polarization: -28.91 SS G_CDS: -0.22 Total: -29.13 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -37.77 -8.90 -46.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176552133.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.337 kcal (2) G-P(sol) polarization free energy of solvation -37.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds