Wall clock time and date at job start Wed Apr 1 2020 04:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46498 * 119.99922 * 2 1 4 4 C 1.50701 * 109.47322 * 270.00347 * 3 2 1 5 5 H 1.08005 * 120.00015 * 359.97438 * 4 3 2 6 6 C 1.37872 * 120.00158 * 180.02562 * 4 3 2 7 7 N 1.31510 * 119.99986 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 120.00036 * 179.97438 * 6 4 3 9 9 H 1.48510 * 109.47104 * 59.99855 * 8 6 4 10 10 H 1.48504 * 109.47175 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47453 * 300.00028 * 8 6 4 12 12 C 1.34772 * 120.00113 * 180.02562 * 2 1 3 13 13 O 1.21590 * 120.00357 * 179.97438 * 12 2 1 14 14 N 1.34781 * 120.00051 * 359.97438 * 12 2 1 15 15 C 1.39976 * 119.99979 * 174.60745 * 14 12 2 16 16 C 1.38984 * 119.99958 * 146.73816 * 15 14 12 17 17 C 1.38214 * 120.22593 * 179.97438 * 16 15 14 18 18 C 1.38016 * 120.21791 * 359.76184 * 17 16 15 19 19 C 1.39572 * 119.99881 * 0.53058 * 18 17 16 20 20 C 1.47862 * 120.11498 * 179.71990 * 19 18 17 21 21 O 1.21552 * 120.00274 * 148.77917 * 20 19 18 22 22 N 1.34781 * 119.99576 * 328.78426 * 20 19 18 23 23 C 1.47164 * 120.94470 * 354.10425 * 22 20 19 24 24 C 1.53297 * 108.37434 * 230.51590 * 23 22 20 25 25 O 1.42963 * 109.26736 * 307.77443 * 24 23 22 26 26 C 1.42966 * 114.16155 * 62.55754 * 25 24 23 27 27 C 1.47155 * 120.97683 * 174.17336 * 22 20 19 28 28 C 1.38592 * 120.00147 * 326.75642 * 15 14 12 29 29 H 1.09006 * 109.46795 * 269.99583 * 1 2 3 30 30 H 1.08999 * 109.47288 * 29.99853 * 1 2 3 31 31 H 1.08999 * 109.46852 * 150.00007 * 1 2 3 32 32 H 1.08997 * 109.47014 * 30.00035 * 3 2 1 33 33 H 1.08996 * 109.47274 * 149.99892 * 3 2 1 34 34 H 0.97007 * 120.00034 * 180.02562 * 7 6 4 35 35 H 0.96997 * 119.99588 * 354.61018 * 14 12 2 36 36 H 1.08000 * 119.88531 * 359.97438 * 16 15 14 37 37 H 1.08001 * 119.88684 * 180.02562 * 17 16 15 38 38 H 1.08007 * 119.99687 * 180.25657 * 18 17 16 39 39 H 1.09003 * 109.64223 * 110.82283 * 23 22 20 40 40 H 1.08991 * 109.73115 * 350.26490 * 23 22 20 41 41 H 1.08999 * 109.51306 * 187.82798 * 24 23 22 42 42 H 1.09005 * 109.51351 * 67.72585 * 24 23 22 43 43 H 1.08992 * 109.51770 * 57.34244 * 26 25 24 44 44 H 1.09001 * 109.51004 * 177.44619 * 26 25 24 45 45 H 1.09005 * 109.68526 * 9.70763 * 27 22 20 46 46 H 1.08997 * 109.67849 * 249.15572 * 27 22 20 47 47 H 1.07998 * 120.10623 * 359.97438 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0981 1.0959 -2.2418 6 6 3.1268 2.8775 -1.6727 7 7 3.5542 3.6176 -0.6731 8 14 3.4387 3.4165 -3.4339 9 1 2.1413 3.5944 -4.1343 10 1 4.1811 4.7026 -3.4339 11 1 4.2410 2.3813 -4.1337 12 6 2.1389 -1.1671 -0.0005 13 8 3.3548 -1.1672 -0.0010 14 7 1.4651 -2.3344 -0.0005 15 6 2.1603 -3.5439 -0.1150 16 6 1.6898 -4.6799 0.5329 17 6 2.3723 -5.8767 0.4227 18 6 3.5229 -5.9529 -0.3356 19 6 4.0071 -4.8164 -0.9852 20 6 5.2430 -4.8936 -1.7932 21 8 5.3796 -4.1765 -2.7651 22 7 6.2181 -5.7593 -1.4520 23 6 6.1327 -6.5442 -0.2101 24 6 7.4499 -6.3804 0.5567 25 8 8.5431 -6.6837 -0.3133 26 6 8.6544 -5.8103 -1.4396 27 6 7.3994 -5.9458 -2.3094 28 6 3.3180 -3.6086 -0.8741 29 1 -0.3633 -0.0001 1.0277 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3633 -0.8900 -0.5138 32 1 1.6084 2.0283 0.5138 33 1 3.1499 1.1384 0.5138 34 1 4.0310 4.4435 -0.8504 35 1 0.4983 -2.3362 0.0788 36 1 0.7878 -4.6272 1.1245 37 1 2.0015 -6.7562 0.9281 38 1 4.0511 -6.8909 -0.4227 39 1 5.9766 -7.5957 -0.4512 40 1 5.3055 -6.1802 0.3992 41 1 7.4627 -7.0609 1.4081 42 1 7.5402 -5.3532 0.9102 43 1 8.7484 -4.7808 -1.0942 44 1 9.5341 -6.0800 -2.0240 45 1 7.4101 -5.1854 -3.0903 46 1 7.3716 -6.9371 -2.7619 47 1 3.6852 -2.7269 -1.3784 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176552133.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:38 Heat of formation + Delta-G solvation = -73.024667 kcal Electronic energy + Delta-G solvation = -30726.386737 eV Core-core repulsion = 26488.540276 eV Total energy + Delta-G solvation = -4237.846462 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.03057 -41.39628 -39.76327 -39.05915 -36.81003 -36.22925 -35.68287 -34.67166 -32.87347 -31.96673 -30.87121 -29.49336 -28.99990 -27.40764 -25.67050 -25.21257 -24.86158 -23.41962 -22.74826 -21.02184 -20.86651 -19.33232 -18.77275 -18.68416 -17.91067 -17.42275 -17.30927 -17.00708 -16.80984 -16.60654 -16.55678 -16.11641 -16.01720 -15.77125 -15.26529 -15.03113 -14.90570 -14.67981 -14.42120 -14.37841 -13.96765 -13.76544 -13.55708 -13.45986 -13.20856 -12.95838 -12.84964 -12.78563 -12.63709 -12.54437 -12.35015 -12.22995 -11.82475 -11.80221 -11.56874 -11.33453 -11.10342 -10.90198 -10.68568 -10.03155 -9.68940 -9.60450 -9.05674 -8.26766 -6.41376 -0.16107 0.31849 1.30567 1.36051 1.42485 1.53104 1.62752 1.79267 2.14375 2.34407 2.77597 2.83826 3.00108 3.04032 3.32633 3.67243 3.85883 3.94348 4.01917 4.10463 4.14498 4.19489 4.23175 4.25569 4.39253 4.44851 4.53146 4.58725 4.63228 4.67527 4.75378 4.79610 4.85314 4.89438 4.93921 5.13631 5.21992 5.28158 5.30020 5.36765 5.47614 5.51003 5.73889 5.96007 6.01329 6.01629 6.04194 6.12677 6.66678 6.91290 6.99923 7.25594 7.57117 8.79490 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010588 B = 0.003043 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2643.873138 B = 9200.470012 C =10969.590954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.620 5.620 3 C 0.277 3.723 4 C -0.547 4.547 5 H 0.047 0.953 6 C 0.012 3.988 7 N -0.925 5.925 8 Si 0.962 3.038 9 H -0.257 1.257 10 H -0.272 1.272 11 H -0.287 1.287 12 C 0.690 3.310 13 O -0.624 6.624 14 N -0.674 5.674 15 C 0.150 3.850 16 C -0.111 4.111 17 C -0.086 4.086 18 C -0.106 4.106 19 C -0.133 4.133 20 C 0.553 3.447 21 O -0.587 6.587 22 N -0.610 5.610 23 C 0.053 3.947 24 C 0.040 3.960 25 O -0.387 6.387 26 C 0.052 3.948 27 C 0.073 3.927 28 C -0.103 4.103 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.034 0.966 33 H -0.002 1.002 34 H 0.268 0.732 35 H 0.424 0.576 36 H 0.169 0.831 37 H 0.188 0.812 38 H 0.171 0.829 39 H 0.115 0.885 40 H 0.120 0.880 41 H 0.143 0.857 42 H 0.039 0.961 43 H 0.038 0.962 44 H 0.133 0.867 45 H 0.079 0.921 46 H 0.102 0.898 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.218 -28.381 5.775 29.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.354 5.354 3 C 0.156 3.844 4 C -0.586 4.586 5 H 0.065 0.935 6 C -0.188 4.188 7 N -0.564 5.564 8 Si 0.786 3.214 9 H -0.181 1.181 10 H -0.197 1.197 11 H -0.213 1.213 12 C 0.391 3.609 13 O -0.504 6.504 14 N -0.326 5.326 15 C 0.054 3.946 16 C -0.131 4.131 17 C -0.104 4.104 18 C -0.125 4.125 19 C -0.137 4.137 20 C 0.344 3.656 21 O -0.468 6.468 22 N -0.343 5.343 23 C -0.068 4.068 24 C -0.037 4.037 25 O -0.305 6.305 26 C -0.026 4.026 27 C -0.049 4.049 28 C -0.125 4.125 29 H 0.097 0.903 30 H 0.091 0.909 31 H 0.105 0.895 32 H 0.052 0.948 33 H 0.016 0.984 34 H 0.077 0.923 35 H 0.265 0.735 36 H 0.187 0.813 37 H 0.205 0.795 38 H 0.188 0.812 39 H 0.133 0.867 40 H 0.138 0.862 41 H 0.160 0.840 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.151 0.849 45 H 0.097 0.903 46 H 0.120 0.880 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.113 -27.853 5.346 28.440 hybrid contribution 0.084 1.800 -1.266 2.203 sum -2.029 -26.053 4.080 26.449 Atomic orbital electron populations 1.21942 0.77609 1.04025 1.02988 1.47374 1.08173 1.04759 1.75115 1.18683 0.90956 0.79034 0.95775 1.21689 1.37161 1.06523 0.93202 0.93462 1.25777 0.94802 0.96405 1.01786 1.70021 1.38747 1.14805 1.32850 0.85561 0.78981 0.77338 0.79487 1.18104 1.19702 1.21319 1.16181 0.85059 0.81391 0.78232 1.90894 1.14206 1.86540 1.58720 1.42585 1.10782 1.02312 1.76902 1.17722 0.93699 0.86261 0.96906 1.21510 1.02573 0.90940 0.98097 1.21448 0.93156 0.98237 0.97537 1.21859 0.97426 0.97181 0.96028 1.19616 0.96107 0.95482 1.02444 1.18866 0.84140 0.78652 0.83944 1.90768 1.81082 1.43818 1.31169 1.48108 1.20361 1.41427 1.24423 1.23377 1.00724 0.97681 0.84995 1.23241 0.85060 1.01951 0.93423 1.87941 1.50072 1.55442 1.37051 1.23012 0.97970 0.93814 0.87782 1.22435 0.84537 1.03824 0.94078 1.21035 0.96500 0.97055 0.97936 0.90297 0.90879 0.89544 0.94782 0.98426 0.92259 0.73548 0.81310 0.79516 0.81208 0.86692 0.86190 0.83952 0.94285 0.94346 0.84925 0.90286 0.87980 0.89694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.24 10.16 127.77 1.30 3.54 16 2 N -0.62 -27.39 2.86 -869.30 -2.48 -29.88 16 3 C 0.28 15.50 5.16 85.63 0.44 15.94 16 4 C -0.55 -33.17 9.39 25.60 0.24 -32.93 16 5 H 0.05 2.88 7.81 -2.91 -0.02 2.86 16 6 C 0.01 0.70 5.46 84.65 0.46 1.17 16 7 N -0.92 -57.55 13.29 21.44 0.28 -57.26 16 8 Si 0.96 47.45 29.54 68.60 2.03 49.47 16 9 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 10 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 11 H -0.29 -14.64 7.11 99.48 0.71 -13.93 16 12 C 0.69 31.18 8.01 179.05 1.43 32.61 16 13 O -0.62 -35.48 13.61 -4.00 -0.05 -35.54 16 14 N -0.67 -21.42 5.17 -317.27 -1.64 -23.06 16 15 C 0.15 4.50 6.28 38.10 0.24 4.74 16 16 C -0.11 -1.93 9.95 22.44 0.22 -1.71 16 17 C -0.09 -1.06 10.02 22.21 0.22 -0.84 16 18 C -0.11 -1.82 7.40 22.54 0.17 -1.65 16 19 C -0.13 -4.01 5.40 -20.11 -0.11 -4.12 16 20 C 0.55 18.83 7.44 86.79 0.65 19.47 16 21 O -0.59 -26.40 16.20 -3.88 -0.06 -26.47 16 22 N -0.61 -14.72 3.02 -820.69 -2.48 -17.20 16 23 C 0.05 0.76 4.87 86.35 0.42 1.18 16 24 C 0.04 0.60 6.98 72.08 0.50 1.10 16 25 O -0.39 -7.10 10.74 -148.98 -1.60 -8.70 16 26 C 0.05 0.96 6.98 72.08 0.50 1.46 16 27 C 0.07 1.57 6.65 86.35 0.57 2.14 16 28 C -0.10 -3.96 8.20 22.66 0.19 -3.77 16 29 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 30 H 0.07 2.27 8.07 -2.39 -0.02 2.25 16 31 H 0.09 1.90 6.45 -2.39 -0.02 1.88 16 32 H 0.03 1.88 8.07 -2.39 -0.02 1.86 16 33 H 0.00 -0.16 7.42 -2.39 -0.02 -0.17 16 34 H 0.27 15.66 8.31 -92.70 -0.77 14.89 16 35 H 0.42 9.32 6.63 -92.71 -0.61 8.70 16 36 H 0.17 1.62 8.06 -2.91 -0.02 1.60 16 37 H 0.19 0.44 8.06 -2.91 -0.02 0.42 16 38 H 0.17 1.64 5.55 -2.91 -0.02 1.63 16 39 H 0.12 0.92 7.92 -2.39 -0.02 0.90 16 40 H 0.12 1.58 4.51 -2.39 -0.01 1.57 16 41 H 0.14 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.04 0.74 8.14 -2.38 -0.02 0.72 16 43 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.13 1.74 8.14 -2.39 -0.02 1.72 16 45 H 0.08 2.09 7.06 -2.38 -0.02 2.08 16 46 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 47 H 0.08 4.37 6.29 -2.91 -0.02 4.36 16 Total: -1.00 -96.55 383.18 1.84 -94.71 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: 0.40 Total: 15.58 kcal Atomic # 6 Polarization: 30.89 SS G_CDS: 7.45 Total: 38.34 kcal Atomic # 7 Polarization: -121.08 SS G_CDS: -6.32 Total: -127.40 kcal Atomic # 8 Polarization: -68.98 SS G_CDS: -1.72 Total: -70.70 kcal Atomic # 14 Polarization: 47.45 SS G_CDS: 2.03 Total: 49.47 kcal Total: -96.55 1.84 -94.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176552133.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.684 kcal (2) G-P(sol) polarization free energy of solvation -96.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds