Wall clock time and date at job start Wed Apr 1 2020 04:28:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46506 * 1
3 3 C 1.46498 * 119.99922 * 2 1
4 4 C 1.50701 * 109.47322 * 270.00347 * 3 2 1
5 5 H 1.08005 * 120.00015 * 359.97438 * 4 3 2
6 6 C 1.37872 * 120.00158 * 180.02562 * 4 3 2
7 7 N 1.31510 * 119.99986 * 359.97438 * 6 4 3
8 8 Si 1.86800 * 120.00036 * 179.97438 * 6 4 3
9 9 H 1.48510 * 109.47104 * 59.99855 * 8 6 4
10 10 H 1.48504 * 109.47175 * 179.97438 * 8 6 4
11 11 H 1.48497 * 109.47453 * 300.00028 * 8 6 4
12 12 C 1.34772 * 120.00113 * 180.02562 * 2 1 3
13 13 O 1.21590 * 120.00357 * 179.97438 * 12 2 1
14 14 N 1.34781 * 120.00051 * 359.97438 * 12 2 1
15 15 C 1.39976 * 119.99979 * 174.60745 * 14 12 2
16 16 C 1.38984 * 119.99958 * 146.73816 * 15 14 12
17 17 C 1.38214 * 120.22593 * 179.97438 * 16 15 14
18 18 C 1.38016 * 120.21791 * 359.76184 * 17 16 15
19 19 C 1.39572 * 119.99881 * 0.53058 * 18 17 16
20 20 C 1.47862 * 120.11498 * 179.71990 * 19 18 17
21 21 O 1.21552 * 120.00274 * 148.77917 * 20 19 18
22 22 N 1.34781 * 119.99576 * 328.78426 * 20 19 18
23 23 C 1.47164 * 120.94470 * 354.10425 * 22 20 19
24 24 C 1.53297 * 108.37434 * 230.51590 * 23 22 20
25 25 O 1.42963 * 109.26736 * 307.77443 * 24 23 22
26 26 C 1.42966 * 114.16155 * 62.55754 * 25 24 23
27 27 C 1.47155 * 120.97683 * 174.17336 * 22 20 19
28 28 C 1.38592 * 120.00147 * 326.75642 * 15 14 12
29 29 H 1.09006 * 109.46795 * 269.99583 * 1 2 3
30 30 H 1.08999 * 109.47288 * 29.99853 * 1 2 3
31 31 H 1.08999 * 109.46852 * 150.00007 * 1 2 3
32 32 H 1.08997 * 109.47014 * 30.00035 * 3 2 1
33 33 H 1.08996 * 109.47274 * 149.99892 * 3 2 1
34 34 H 0.97007 * 120.00034 * 180.02562 * 7 6 4
35 35 H 0.96997 * 119.99588 * 354.61018 * 14 12 2
36 36 H 1.08000 * 119.88531 * 359.97438 * 16 15 14
37 37 H 1.08001 * 119.88684 * 180.02562 * 17 16 15
38 38 H 1.08007 * 119.99687 * 180.25657 * 18 17 16
39 39 H 1.09003 * 109.64223 * 110.82283 * 23 22 20
40 40 H 1.08991 * 109.73115 * 350.26490 * 23 22 20
41 41 H 1.08999 * 109.51306 * 187.82798 * 24 23 22
42 42 H 1.09005 * 109.51351 * 67.72585 * 24 23 22
43 43 H 1.08992 * 109.51770 * 57.34244 * 26 25 24
44 44 H 1.09001 * 109.51004 * 177.44619 * 26 25 24
45 45 H 1.09005 * 109.68526 * 9.70763 * 27 22 20
46 46 H 1.08997 * 109.67849 * 249.15572 * 27 22 20
47 47 H 1.07998 * 120.10623 * 359.97438 * 28 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4651 0.0000 0.0000
3 6 2.1975 1.2687 0.0000
4 6 2.4486 1.7038 -1.4208
5 1 2.0981 1.0959 -2.2418
6 6 3.1268 2.8775 -1.6727
7 7 3.5542 3.6176 -0.6731
8 14 3.4387 3.4165 -3.4339
9 1 2.1413 3.5944 -4.1343
10 1 4.1811 4.7026 -3.4339
11 1 4.2410 2.3813 -4.1337
12 6 2.1389 -1.1671 -0.0005
13 8 3.3548 -1.1672 -0.0010
14 7 1.4651 -2.3344 -0.0005
15 6 2.1603 -3.5439 -0.1150
16 6 1.6898 -4.6799 0.5329
17 6 2.3723 -5.8767 0.4227
18 6 3.5229 -5.9529 -0.3356
19 6 4.0071 -4.8164 -0.9852
20 6 5.2430 -4.8936 -1.7932
21 8 5.3796 -4.1765 -2.7651
22 7 6.2181 -5.7593 -1.4520
23 6 6.1327 -6.5442 -0.2101
24 6 7.4499 -6.3804 0.5567
25 8 8.5431 -6.6837 -0.3133
26 6 8.6544 -5.8103 -1.4396
27 6 7.3994 -5.9458 -2.3094
28 6 3.3180 -3.6086 -0.8741
29 1 -0.3633 -0.0001 1.0277
30 1 -0.3634 0.8900 -0.5138
31 1 -0.3633 -0.8900 -0.5138
32 1 1.6084 2.0283 0.5138
33 1 3.1499 1.1384 0.5138
34 1 4.0310 4.4435 -0.8504
35 1 0.4983 -2.3362 0.0788
36 1 0.7878 -4.6272 1.1245
37 1 2.0015 -6.7562 0.9281
38 1 4.0511 -6.8909 -0.4227
39 1 5.9766 -7.5957 -0.4512
40 1 5.3055 -6.1802 0.3992
41 1 7.4627 -7.0609 1.4081
42 1 7.5402 -5.3532 0.9102
43 1 8.7484 -4.7808 -1.0942
44 1 9.5341 -6.0800 -2.0240
45 1 7.4101 -5.1854 -3.0903
46 1 7.3716 -6.9371 -2.7619
47 1 3.6852 -2.7269 -1.3784
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000176552133.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:28:38
Heat of formation + Delta-G solvation = -73.024667 kcal
Electronic energy + Delta-G solvation = -30726.386737 eV
Core-core repulsion = 26488.540276 eV
Total energy + Delta-G solvation = -4237.846462 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.168 amu
Computer time = 1.05 seconds
Orbital eigenvalues (eV)
-42.03057 -41.39628 -39.76327 -39.05915 -36.81003 -36.22925 -35.68287 -34.67166
-32.87347 -31.96673 -30.87121 -29.49336 -28.99990 -27.40764 -25.67050 -25.21257
-24.86158 -23.41962 -22.74826 -21.02184 -20.86651 -19.33232 -18.77275 -18.68416
-17.91067 -17.42275 -17.30927 -17.00708 -16.80984 -16.60654 -16.55678 -16.11641
-16.01720 -15.77125 -15.26529 -15.03113 -14.90570 -14.67981 -14.42120 -14.37841
-13.96765 -13.76544 -13.55708 -13.45986 -13.20856 -12.95838 -12.84964 -12.78563
-12.63709 -12.54437 -12.35015 -12.22995 -11.82475 -11.80221 -11.56874 -11.33453
-11.10342 -10.90198 -10.68568 -10.03155 -9.68940 -9.60450 -9.05674 -8.26766
-6.41376 -0.16107 0.31849 1.30567 1.36051 1.42485 1.53104 1.62752
1.79267 2.14375 2.34407 2.77597 2.83826 3.00108 3.04032 3.32633
3.67243 3.85883 3.94348 4.01917 4.10463 4.14498 4.19489 4.23175
4.25569 4.39253 4.44851 4.53146 4.58725 4.63228 4.67527 4.75378
4.79610 4.85314 4.89438 4.93921 5.13631 5.21992 5.28158 5.30020
5.36765 5.47614 5.51003 5.73889 5.96007 6.01329 6.01629 6.04194
6.12677 6.66678 6.91290 6.99923 7.25594 7.57117 8.79490
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.010588 B = 0.003043 C = 0.002552
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2643.873138 B = 9200.470012 C =10969.590954
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.076 3.924
2 N -0.620 5.620
3 C 0.277 3.723
4 C -0.547 4.547
5 H 0.047 0.953
6 C 0.012 3.988
7 N -0.925 5.925
8 Si 0.962 3.038
9 H -0.257 1.257
10 H -0.272 1.272
11 H -0.287 1.287
12 C 0.690 3.310
13 O -0.624 6.624
14 N -0.674 5.674
15 C 0.150 3.850
16 C -0.111 4.111
17 C -0.086 4.086
18 C -0.106 4.106
19 C -0.133 4.133
20 C 0.553 3.447
21 O -0.587 6.587
22 N -0.610 5.610
23 C 0.053 3.947
24 C 0.040 3.960
25 O -0.387 6.387
26 C 0.052 3.948
27 C 0.073 3.927
28 C -0.103 4.103
29 H 0.079 0.921
30 H 0.072 0.928
31 H 0.086 0.914
32 H 0.034 0.966
33 H -0.002 1.002
34 H 0.268 0.732
35 H 0.424 0.576
36 H 0.169 0.831
37 H 0.188 0.812
38 H 0.171 0.829
39 H 0.115 0.885
40 H 0.120 0.880
41 H 0.143 0.857
42 H 0.039 0.961
43 H 0.038 0.962
44 H 0.133 0.867
45 H 0.079 0.921
46 H 0.102 0.898
47 H 0.085 0.915
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.218 -28.381 5.775 29.141
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.066 4.066
2 N -0.354 5.354
3 C 0.156 3.844
4 C -0.586 4.586
5 H 0.065 0.935
6 C -0.188 4.188
7 N -0.564 5.564
8 Si 0.786 3.214
9 H -0.181 1.181
10 H -0.197 1.197
11 H -0.213 1.213
12 C 0.391 3.609
13 O -0.504 6.504
14 N -0.326 5.326
15 C 0.054 3.946
16 C -0.131 4.131
17 C -0.104 4.104
18 C -0.125 4.125
19 C -0.137 4.137
20 C 0.344 3.656
21 O -0.468 6.468
22 N -0.343 5.343
23 C -0.068 4.068
24 C -0.037 4.037
25 O -0.305 6.305
26 C -0.026 4.026
27 C -0.049 4.049
28 C -0.125 4.125
29 H 0.097 0.903
30 H 0.091 0.909
31 H 0.105 0.895
32 H 0.052 0.948
33 H 0.016 0.984
34 H 0.077 0.923
35 H 0.265 0.735
36 H 0.187 0.813
37 H 0.205 0.795
38 H 0.188 0.812
39 H 0.133 0.867
40 H 0.138 0.862
41 H 0.160 0.840
42 H 0.057 0.943
43 H 0.057 0.943
44 H 0.151 0.849
45 H 0.097 0.903
46 H 0.120 0.880
47 H 0.103 0.897
Dipole moment (debyes) X Y Z Total
from point charges -2.113 -27.853 5.346 28.440
hybrid contribution 0.084 1.800 -1.266 2.203
sum -2.029 -26.053 4.080 26.449
Atomic orbital electron populations
1.21942 0.77609 1.04025 1.02988 1.47374 1.08173 1.04759 1.75115
1.18683 0.90956 0.79034 0.95775 1.21689 1.37161 1.06523 0.93202
0.93462 1.25777 0.94802 0.96405 1.01786 1.70021 1.38747 1.14805
1.32850 0.85561 0.78981 0.77338 0.79487 1.18104 1.19702 1.21319
1.16181 0.85059 0.81391 0.78232 1.90894 1.14206 1.86540 1.58720
1.42585 1.10782 1.02312 1.76902 1.17722 0.93699 0.86261 0.96906
1.21510 1.02573 0.90940 0.98097 1.21448 0.93156 0.98237 0.97537
1.21859 0.97426 0.97181 0.96028 1.19616 0.96107 0.95482 1.02444
1.18866 0.84140 0.78652 0.83944 1.90768 1.81082 1.43818 1.31169
1.48108 1.20361 1.41427 1.24423 1.23377 1.00724 0.97681 0.84995
1.23241 0.85060 1.01951 0.93423 1.87941 1.50072 1.55442 1.37051
1.23012 0.97970 0.93814 0.87782 1.22435 0.84537 1.03824 0.94078
1.21035 0.96500 0.97055 0.97936 0.90297 0.90879 0.89544 0.94782
0.98426 0.92259 0.73548 0.81310 0.79516 0.81208 0.86692 0.86190
0.83952 0.94285 0.94346 0.84925 0.90286 0.87980 0.89694
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 2.24 10.16 127.77 1.30 3.54 16
2 N -0.62 -27.39 2.86 -869.30 -2.48 -29.88 16
3 C 0.28 15.50 5.16 85.63 0.44 15.94 16
4 C -0.55 -33.17 9.39 25.60 0.24 -32.93 16
5 H 0.05 2.88 7.81 -2.91 -0.02 2.86 16
6 C 0.01 0.70 5.46 84.65 0.46 1.17 16
7 N -0.92 -57.55 13.29 21.44 0.28 -57.26 16
8 Si 0.96 47.45 29.54 68.60 2.03 49.47 16
9 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16
10 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16
11 H -0.29 -14.64 7.11 99.48 0.71 -13.93 16
12 C 0.69 31.18 8.01 179.05 1.43 32.61 16
13 O -0.62 -35.48 13.61 -4.00 -0.05 -35.54 16
14 N -0.67 -21.42 5.17 -317.27 -1.64 -23.06 16
15 C 0.15 4.50 6.28 38.10 0.24 4.74 16
16 C -0.11 -1.93 9.95 22.44 0.22 -1.71 16
17 C -0.09 -1.06 10.02 22.21 0.22 -0.84 16
18 C -0.11 -1.82 7.40 22.54 0.17 -1.65 16
19 C -0.13 -4.01 5.40 -20.11 -0.11 -4.12 16
20 C 0.55 18.83 7.44 86.79 0.65 19.47 16
21 O -0.59 -26.40 16.20 -3.88 -0.06 -26.47 16
22 N -0.61 -14.72 3.02 -820.69 -2.48 -17.20 16
23 C 0.05 0.76 4.87 86.35 0.42 1.18 16
24 C 0.04 0.60 6.98 72.08 0.50 1.10 16
25 O -0.39 -7.10 10.74 -148.98 -1.60 -8.70 16
26 C 0.05 0.96 6.98 72.08 0.50 1.46 16
27 C 0.07 1.57 6.65 86.35 0.57 2.14 16
28 C -0.10 -3.96 8.20 22.66 0.19 -3.77 16
29 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16
30 H 0.07 2.27 8.07 -2.39 -0.02 2.25 16
31 H 0.09 1.90 6.45 -2.39 -0.02 1.88 16
32 H 0.03 1.88 8.07 -2.39 -0.02 1.86 16
33 H 0.00 -0.16 7.42 -2.39 -0.02 -0.17 16
34 H 0.27 15.66 8.31 -92.70 -0.77 14.89 16
35 H 0.42 9.32 6.63 -92.71 -0.61 8.70 16
36 H 0.17 1.62 8.06 -2.91 -0.02 1.60 16
37 H 0.19 0.44 8.06 -2.91 -0.02 0.42 16
38 H 0.17 1.64 5.55 -2.91 -0.02 1.63 16
39 H 0.12 0.92 7.92 -2.39 -0.02 0.90 16
40 H 0.12 1.58 4.51 -2.39 -0.01 1.57 16
41 H 0.14 1.11 8.14 -2.39 -0.02 1.09 16
42 H 0.04 0.74 8.14 -2.38 -0.02 0.72 16
43 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16
44 H 0.13 1.74 8.14 -2.39 -0.02 1.72 16
45 H 0.08 2.09 7.06 -2.38 -0.02 2.08 16
46 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16
47 H 0.08 4.37 6.29 -2.91 -0.02 4.36 16
Total: -1.00 -96.55 383.18 1.84 -94.71
By element:
Atomic # 1 Polarization: 15.18 SS G_CDS: 0.40 Total: 15.58 kcal
Atomic # 6 Polarization: 30.89 SS G_CDS: 7.45 Total: 38.34 kcal
Atomic # 7 Polarization: -121.08 SS G_CDS: -6.32 Total: -127.40 kcal
Atomic # 8 Polarization: -68.98 SS G_CDS: -1.72 Total: -70.70 kcal
Atomic # 14 Polarization: 47.45 SS G_CDS: 2.03 Total: 49.47 kcal
Total: -96.55 1.84 -94.71 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000176552133.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 21.684 kcal
(2) G-P(sol) polarization free energy of solvation -96.550 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.866 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.841 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.709 kcal
(6) G-S(sol) free energy of system = (1) + (5) -73.025 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.05 seconds