Wall clock time and date at job start Wed Apr 1 2020 04:30:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46906 * 110.99773 * 2 1 4 4 C 1.52999 * 109.47113 * 66.04267 * 3 2 1 5 5 N 1.46504 * 109.46889 * 180.02562 * 4 3 2 6 6 C 1.34777 * 119.99684 * 180.02562 * 5 4 3 7 7 O 1.21356 * 120.00404 * 359.97438 * 6 5 4 8 8 C 1.49355 * 120.00003 * 180.02562 * 6 5 4 9 9 O 1.21378 * 119.99906 * 359.97438 * 8 6 5 10 10 N 1.34777 * 120.00003 * 180.02562 * 8 6 5 11 11 C 1.39728 * 119.99556 * 174.78291 * 10 8 6 12 12 C 1.39017 * 120.04006 * 326.28030 * 11 10 8 13 13 C 1.38145 * 120.05785 * 180.02562 * 12 11 10 14 14 C 1.38183 * 120.14532 * 359.70098 * 13 12 11 15 15 C 1.38917 * 120.08080 * 0.55652 * 14 13 12 16 16 O 1.35751 * 120.03230 * 179.74537 * 15 14 13 17 17 C 1.34827 * 117.00300 * 173.82204 * 16 15 14 18 18 H 1.08001 * 119.99789 * 354.59330 * 17 16 15 19 19 C 1.38648 * 119.99917 * 174.60123 * 17 16 15 20 20 N 1.31555 * 120.00195 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99750 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47475 * 89.99446 * 21 19 17 23 23 H 1.48507 * 109.47282 * 209.99549 * 21 19 17 24 24 H 1.48497 * 109.47348 * 329.99239 * 21 19 17 25 25 C 1.38756 * 119.93875 * 359.46536 * 15 14 13 26 26 C 1.46896 * 111.00318 * 236.04551 * 2 1 3 27 27 C 1.52999 * 117.49910 * 7.70014 * 26 2 1 28 28 C 1.52996 * 117.49725 * 299.04164 * 26 2 1 29 29 H 1.08998 * 109.46863 * 60.00217 * 1 2 3 30 30 H 1.08999 * 109.46590 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47178 * 299.99739 * 1 2 3 32 32 H 1.09005 * 109.46878 * 306.04557 * 3 2 1 33 33 H 1.08993 * 109.47004 * 186.04780 * 3 2 1 34 34 H 1.09005 * 109.47011 * 60.00372 * 4 3 2 35 35 H 1.08993 * 109.47604 * 300.00146 * 4 3 2 36 36 H 0.96991 * 120.00125 * 359.97438 * 5 4 3 37 37 H 0.96998 * 119.99977 * 354.76966 * 10 8 6 38 38 H 1.08000 * 119.97223 * 0.02711 * 12 11 10 39 39 H 1.07998 * 119.92611 * 179.97438 * 13 12 11 40 40 H 1.07994 * 119.95482 * 180.29871 * 14 13 12 41 41 H 0.96997 * 119.99824 * 180.02562 * 20 19 17 42 42 H 1.08000 * 120.07290 * 180.22890 * 25 15 14 43 43 H 1.09006 * 115.54779 * 153.36797 * 26 2 1 44 44 H 1.09003 * 117.49783 * 0.02562 * 27 26 2 45 45 H 1.09001 * 117.50141 * 145.02128 * 27 26 2 46 46 H 1.09007 * 117.49694 * 214.97579 * 28 26 2 47 47 H 1.09000 * 117.49918 * 359.97075 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0575 1.3182 5 7 2.1558 3.4255 1.3179 6 6 1.9552 4.2243 2.3847 7 8 1.3397 3.8106 3.3454 8 6 2.4893 5.6191 2.3843 9 8 3.1045 6.0330 1.4233 10 7 2.2891 6.4177 3.4513 11 6 2.8803 7.6829 3.4976 12 6 4.1288 7.8891 2.9220 13 6 4.7139 9.1397 2.9680 14 6 4.0581 10.1906 3.5804 15 6 2.8127 9.9899 4.1623 16 8 2.1716 11.0217 4.7682 17 6 0.9146 10.7931 5.1991 18 1 0.4309 9.8529 4.9788 19 6 0.2431 11.7650 5.9248 20 7 0.8325 12.9101 6.1934 21 14 -1.4981 11.4480 6.5224 22 1 -1.4535 10.8256 7.8700 23 1 -2.2383 12.7334 6.5952 24 1 -2.1870 10.5330 5.5772 25 6 2.2220 8.7351 4.1184 26 6 1.9955 -0.7660 -1.1375 27 6 0.9932 -1.2527 -2.1860 28 6 1.6337 -2.2503 -1.2177 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.5610 1.9274 -0.8310 33 1 3.0796 1.3445 -0.1083 34 1 2.0658 1.5016 2.1492 35 1 0.5471 2.0845 1.4265 36 1 2.6481 3.7560 0.5503 37 1 1.7344 6.1143 4.1869 38 1 4.6417 7.0710 2.4383 39 1 5.6840 9.2975 2.5205 40 1 4.5162 11.1681 3.6104 41 1 0.3627 13.5899 6.7015 42 1 1.2522 8.5775 4.5668 43 1 2.9848 -0.4694 -1.4864 44 1 -0.0569 -1.0042 -2.0319 45 1 1.3230 -1.2769 -3.2246 46 1 2.3847 -2.9304 -1.6198 47 1 1.0054 -2.6587 -0.4261 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265380056.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:24 Heat of formation + Delta-G solvation = -21.033621 kcal Electronic energy + Delta-G solvation = -28753.198377 eV Core-core repulsion = 24517.606416 eV Total energy + Delta-G solvation = -4235.591961 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.96237 -39.65378 -39.20559 -38.40140 -36.58788 -36.06175 -34.48950 -33.75902 -32.27323 -29.69804 -29.38152 -28.69638 -27.16967 -25.47023 -24.81009 -22.97490 -22.48650 -21.90878 -21.54536 -20.68054 -20.09542 -18.87633 -18.04285 -17.50566 -17.28810 -16.63203 -16.39951 -15.85034 -15.62173 -15.50237 -15.22830 -15.07195 -14.53133 -14.34965 -14.13038 -14.11802 -13.81581 -13.63286 -13.41882 -13.04963 -12.91868 -12.53650 -12.42828 -12.27120 -11.94745 -11.93034 -11.76685 -11.67461 -11.61876 -11.26799 -11.09601 -11.02871 -10.87413 -10.80530 -10.45560 -9.99673 -9.63508 -9.56012 -9.48046 -8.84104 -8.75434 -7.84362 -7.24509 -6.47973 -4.07854 1.16101 2.02792 2.18328 2.34367 3.05715 3.10615 3.12506 3.16643 3.17405 3.42061 3.68253 3.94310 4.18797 4.32746 4.37344 4.44280 4.46844 4.52938 4.56772 4.73475 4.93751 5.00765 5.07139 5.13393 5.21648 5.25171 5.30623 5.39320 5.44534 5.54206 5.60708 5.61107 5.85277 5.89141 5.95049 6.12410 6.16836 6.38891 6.44330 6.51664 6.67358 6.85085 6.92973 7.06454 7.21486 7.35167 7.42294 7.63190 7.70308 7.94843 7.99455 8.97396 9.65845 10.69722 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017117 B = 0.001749 C = 0.001617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.421753 B =16004.258342 C =17315.686645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.505 5.505 3 C 0.044 3.956 4 C 0.120 3.880 5 N -0.702 5.702 6 C 0.513 3.487 7 O -0.515 6.515 8 C 0.504 3.496 9 O -0.502 6.502 10 N -0.635 5.635 11 C 0.173 3.827 12 C -0.204 4.204 13 C -0.063 4.063 14 C -0.195 4.195 15 C 0.168 3.832 16 O -0.174 6.174 17 C -0.393 4.393 18 H 0.091 0.909 19 C 0.041 3.959 20 N -0.860 5.860 21 Si 0.940 3.060 22 H -0.273 1.273 23 H -0.277 1.277 24 H -0.268 1.268 25 C -0.250 4.250 26 C 0.019 3.981 27 C -0.219 4.219 28 C -0.168 4.168 29 H 0.035 0.965 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.047 0.953 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.413 0.587 37 H 0.419 0.581 38 H 0.119 0.881 39 H 0.118 0.882 40 H 0.120 0.880 41 H 0.270 0.730 42 H 0.133 0.867 43 H 0.120 0.880 44 H 0.100 0.900 45 H 0.095 0.905 46 H 0.098 0.902 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.401 -25.941 -13.647 29.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.227 5.227 3 C -0.084 4.084 4 C -0.004 4.004 5 N -0.357 5.357 6 C 0.293 3.707 7 O -0.390 6.390 8 C 0.285 3.715 9 O -0.376 6.376 10 N -0.281 5.281 11 C 0.080 3.920 12 C -0.225 4.225 13 C -0.082 4.082 14 C -0.215 4.215 15 C 0.113 3.887 16 O -0.077 6.077 17 C -0.469 4.469 18 H 0.108 0.892 19 C -0.164 4.164 20 N -0.495 5.495 21 Si 0.765 3.235 22 H -0.198 1.198 23 H -0.202 1.202 24 H -0.192 1.192 25 C -0.271 4.271 26 C -0.090 4.090 27 C -0.258 4.258 28 C -0.206 4.206 29 H 0.054 0.946 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.066 0.934 33 H 0.105 0.895 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.250 0.750 37 H 0.256 0.744 38 H 0.137 0.863 39 H 0.136 0.864 40 H 0.138 0.862 41 H 0.080 0.920 42 H 0.150 0.850 43 H 0.138 0.862 44 H 0.119 0.881 45 H 0.113 0.887 46 H 0.117 0.883 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.539 -25.753 -13.012 28.894 hybrid contribution -1.314 0.089 -0.436 1.387 sum 0.226 -25.664 -13.447 28.974 Atomic orbital electron populations 1.22639 0.86941 1.02590 1.01437 1.61717 1.08228 1.12471 1.40332 1.22278 1.01292 0.88523 0.96316 1.21410 0.99866 0.80662 0.98462 1.45591 1.56828 1.13630 1.19632 1.20071 0.80829 0.86476 0.83301 1.90789 1.39294 1.75267 1.33612 1.20012 0.81684 0.86281 0.83503 1.90787 1.39219 1.74551 1.33045 1.43139 1.49240 1.14881 1.20811 1.17396 0.92209 0.82755 0.99623 1.20521 0.95100 0.98367 1.08507 1.20524 0.98494 0.91852 0.97294 1.20293 0.95436 0.99918 1.05817 1.19071 0.91452 0.86943 0.91216 1.84021 1.27729 1.31656 1.64281 1.21288 0.86897 1.03687 1.35074 0.89163 1.25278 1.00116 0.94814 0.96172 1.70033 1.37645 1.05219 1.36595 0.85727 0.80283 0.78233 0.79301 1.19815 1.20215 1.19204 1.20845 1.02898 0.92062 1.11293 1.22667 0.98552 0.95639 0.92134 1.23593 0.99778 1.05855 0.96590 1.23078 1.03666 0.92089 1.01792 0.94638 0.90892 0.90541 0.93440 0.89524 0.89775 0.90746 0.75046 0.74377 0.86309 0.86395 0.86190 0.91958 0.84975 0.86211 0.88135 0.88699 0.88328 0.88422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 7.96 60.07 0.48 0.54 16 2 N -0.51 -3.24 4.97 -234.88 -1.17 -4.41 16 3 C 0.04 0.26 5.05 -3.82 -0.02 0.24 16 4 C 0.12 0.94 5.60 -4.04 -0.02 0.91 16 5 N -0.70 -6.57 5.55 -60.76 -0.34 -6.91 16 6 C 0.51 6.52 7.89 -11.63 -0.09 6.42 16 7 O -0.51 -7.57 16.48 5.49 0.09 -7.48 16 8 C 0.50 7.48 7.62 -11.63 -0.09 7.39 16 9 O -0.50 -8.21 14.18 5.47 0.08 -8.14 16 10 N -0.64 -10.09 5.32 -10.31 -0.05 -10.14 16 11 C 0.17 3.28 6.27 -83.77 -0.52 2.75 16 12 C -0.20 -3.77 8.65 -39.33 -0.34 -4.11 16 13 C -0.06 -1.14 10.03 -39.64 -0.40 -1.53 16 14 C -0.19 -4.06 9.99 -39.35 -0.39 -4.46 16 15 C 0.17 4.00 6.64 -39.14 -0.26 3.74 16 16 O -0.17 -4.88 9.76 0.05 0.00 -4.88 16 17 C -0.39 -10.82 9.44 30.88 0.29 -10.53 16 18 H 0.09 2.30 5.30 -52.49 -0.28 2.02 16 19 C 0.04 1.11 5.49 -17.52 -0.10 1.01 16 20 N -0.86 -24.92 13.67 55.48 0.76 -24.16 16 21 Si 0.94 20.34 29.55 -169.99 -5.02 15.32 16 22 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 23 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 24 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 25 C -0.25 -5.36 9.05 -39.19 -0.35 -5.71 16 26 C 0.02 0.11 6.11 -67.72 -0.41 -0.31 16 27 C -0.22 -1.08 9.51 -26.70 -0.25 -1.33 16 28 C -0.17 -0.85 9.99 -26.70 -0.27 -1.12 16 29 H 0.04 0.19 7.23 -51.93 -0.38 -0.18 16 30 H 0.07 0.38 6.63 -51.93 -0.34 0.04 16 31 H 0.08 0.45 6.47 -51.93 -0.34 0.11 16 32 H 0.05 0.27 8.12 -51.93 -0.42 -0.15 16 33 H 0.09 0.46 7.96 -51.93 -0.41 0.04 16 34 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.62 6.55 -51.93 -0.34 0.28 16 36 H 0.41 3.31 7.94 -40.82 -0.32 2.98 16 37 H 0.42 5.96 8.30 -40.82 -0.34 5.62 16 38 H 0.12 2.07 6.43 -52.49 -0.34 1.74 16 39 H 0.12 1.74 8.06 -52.49 -0.42 1.32 16 40 H 0.12 2.38 8.06 -52.49 -0.42 1.95 16 41 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 42 H 0.13 2.81 5.71 -52.49 -0.30 2.51 16 43 H 0.12 0.58 7.93 -51.93 -0.41 0.17 16 44 H 0.10 0.50 5.90 -51.93 -0.31 0.19 16 45 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.10 0.52 7.56 -51.93 -0.39 0.13 16 LS Contribution 392.95 15.07 5.92 5.92 Total: -1.00 -32.40 392.95 -8.66 -41.06 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -6.17 Total: 9.89 kcal Atomic # 6 Polarization: -3.33 SS G_CDS: -2.75 Total: -6.08 kcal Atomic # 7 Polarization: -44.82 SS G_CDS: -0.80 Total: -45.62 kcal Atomic # 8 Polarization: -20.66 SS G_CDS: 0.17 Total: -20.49 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.40 -8.66 -41.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265380056.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.026 kcal (2) G-P(sol) polarization free energy of solvation -32.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds