Wall clock time and date at job start Wed Apr 1 2020 04:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46906 * 110.99773 * 2 1 4 4 C 1.52999 * 109.47113 * 66.04267 * 3 2 1 5 5 N 1.46504 * 109.46889 * 180.02562 * 4 3 2 6 6 C 1.34777 * 119.99684 * 180.02562 * 5 4 3 7 7 O 1.21356 * 120.00404 * 359.97438 * 6 5 4 8 8 C 1.49355 * 120.00003 * 180.02562 * 6 5 4 9 9 O 1.21378 * 119.99906 * 359.97438 * 8 6 5 10 10 N 1.34777 * 120.00003 * 180.02562 * 8 6 5 11 11 C 1.39728 * 119.99556 * 174.78291 * 10 8 6 12 12 C 1.39017 * 120.04006 * 326.28030 * 11 10 8 13 13 C 1.38145 * 120.05785 * 180.02562 * 12 11 10 14 14 C 1.38183 * 120.14532 * 359.70098 * 13 12 11 15 15 C 1.38917 * 120.08080 * 0.55652 * 14 13 12 16 16 O 1.35751 * 120.03230 * 179.74537 * 15 14 13 17 17 C 1.34827 * 117.00300 * 173.82204 * 16 15 14 18 18 H 1.08001 * 119.99789 * 354.59330 * 17 16 15 19 19 C 1.38648 * 119.99917 * 174.60123 * 17 16 15 20 20 N 1.31555 * 120.00195 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99750 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47475 * 89.99446 * 21 19 17 23 23 H 1.48507 * 109.47282 * 209.99549 * 21 19 17 24 24 H 1.48497 * 109.47348 * 329.99239 * 21 19 17 25 25 C 1.38756 * 119.93875 * 359.46536 * 15 14 13 26 26 C 1.46896 * 111.00318 * 236.04551 * 2 1 3 27 27 C 1.52999 * 117.49910 * 7.70014 * 26 2 1 28 28 C 1.52996 * 117.49725 * 299.04164 * 26 2 1 29 29 H 1.08998 * 109.46863 * 60.00217 * 1 2 3 30 30 H 1.08999 * 109.46590 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47178 * 299.99739 * 1 2 3 32 32 H 1.09005 * 109.46878 * 306.04557 * 3 2 1 33 33 H 1.08993 * 109.47004 * 186.04780 * 3 2 1 34 34 H 1.09005 * 109.47011 * 60.00372 * 4 3 2 35 35 H 1.08993 * 109.47604 * 300.00146 * 4 3 2 36 36 H 0.96991 * 120.00125 * 359.97438 * 5 4 3 37 37 H 0.96998 * 119.99977 * 354.76966 * 10 8 6 38 38 H 1.08000 * 119.97223 * 0.02711 * 12 11 10 39 39 H 1.07998 * 119.92611 * 179.97438 * 13 12 11 40 40 H 1.07994 * 119.95482 * 180.29871 * 14 13 12 41 41 H 0.96997 * 119.99824 * 180.02562 * 20 19 17 42 42 H 1.08000 * 120.07290 * 180.22890 * 25 15 14 43 43 H 1.09006 * 115.54779 * 153.36797 * 26 2 1 44 44 H 1.09003 * 117.49783 * 0.02562 * 27 26 2 45 45 H 1.09001 * 117.50141 * 145.02128 * 27 26 2 46 46 H 1.09007 * 117.49694 * 214.97579 * 28 26 2 47 47 H 1.09000 * 117.49918 * 359.97075 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0575 1.3182 5 7 2.1558 3.4255 1.3179 6 6 1.9552 4.2243 2.3847 7 8 1.3397 3.8106 3.3454 8 6 2.4893 5.6191 2.3843 9 8 3.1045 6.0330 1.4233 10 7 2.2891 6.4177 3.4513 11 6 2.8803 7.6829 3.4976 12 6 4.1288 7.8891 2.9220 13 6 4.7139 9.1397 2.9680 14 6 4.0581 10.1906 3.5804 15 6 2.8127 9.9899 4.1623 16 8 2.1716 11.0217 4.7682 17 6 0.9146 10.7931 5.1991 18 1 0.4309 9.8529 4.9788 19 6 0.2431 11.7650 5.9248 20 7 0.8325 12.9101 6.1934 21 14 -1.4981 11.4480 6.5224 22 1 -1.4535 10.8256 7.8700 23 1 -2.2383 12.7334 6.5952 24 1 -2.1870 10.5330 5.5772 25 6 2.2220 8.7351 4.1184 26 6 1.9955 -0.7660 -1.1375 27 6 0.9932 -1.2527 -2.1860 28 6 1.6337 -2.2503 -1.2177 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.5610 1.9274 -0.8310 33 1 3.0796 1.3445 -0.1083 34 1 2.0658 1.5016 2.1492 35 1 0.5471 2.0845 1.4265 36 1 2.6481 3.7560 0.5503 37 1 1.7344 6.1143 4.1869 38 1 4.6417 7.0710 2.4383 39 1 5.6840 9.2975 2.5205 40 1 4.5162 11.1681 3.6104 41 1 0.3627 13.5899 6.7015 42 1 1.2522 8.5775 4.5668 43 1 2.9848 -0.4694 -1.4864 44 1 -0.0569 -1.0042 -2.0319 45 1 1.3230 -1.2769 -3.2246 46 1 2.3847 -2.9304 -1.6198 47 1 1.0054 -2.6587 -0.4261 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265380056.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:23 Heat of formation + Delta-G solvation = -44.944994 kcal Electronic energy + Delta-G solvation = -28754.235252 eV Core-core repulsion = 24517.606416 eV Total energy + Delta-G solvation = -4236.628836 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.16822 -40.86073 -40.07110 -39.65161 -38.18650 -36.87816 -35.76070 -34.48305 -34.23880 -31.16274 -30.50415 -29.97653 -27.77300 -27.33947 -25.94230 -23.59288 -23.49683 -23.19102 -22.64011 -21.55411 -20.98801 -20.14666 -19.68838 -18.97992 -18.15422 -17.57947 -17.35601 -17.03497 -16.81683 -16.49268 -16.47111 -16.15655 -15.93362 -15.69770 -15.55280 -15.17095 -15.07690 -14.62580 -14.51525 -14.29833 -14.12366 -13.58446 -13.37839 -13.36179 -13.10670 -13.05507 -12.73788 -12.71460 -12.55871 -12.41441 -12.35998 -12.16327 -12.12070 -11.67824 -11.53215 -11.35023 -11.26467 -10.85602 -10.71891 -10.39701 -9.43516 -9.19065 -8.94757 -8.47524 -6.16186 -0.06935 0.58570 0.70283 1.09807 1.35837 1.44427 1.52396 1.99290 2.16989 2.32754 2.77423 2.80903 3.07969 3.14582 3.30016 3.47248 3.71252 3.94103 3.96716 4.08185 4.08255 4.11420 4.28522 4.30432 4.39170 4.41927 4.54647 4.57687 4.59138 4.74712 4.78008 4.85672 4.89577 4.94732 4.99568 5.05823 5.09371 5.12659 5.24737 5.25332 5.31261 5.60527 5.64168 5.81767 5.94829 6.00225 6.00904 6.11684 6.22725 6.58508 6.77556 6.97036 7.75270 8.75076 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017117 B = 0.001749 C = 0.001617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.421753 B =16004.258342 C =17315.686645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.517 5.517 3 C 0.051 3.949 4 C 0.122 3.878 5 N -0.682 5.682 6 C 0.520 3.480 7 O -0.537 6.537 8 C 0.508 3.492 9 O -0.514 6.514 10 N -0.635 5.635 11 C 0.177 3.823 12 C -0.194 4.194 13 C -0.048 4.048 14 C -0.206 4.206 15 C 0.134 3.866 16 O -0.224 6.224 17 C -0.414 4.414 18 H 0.100 0.900 19 C -0.019 4.019 20 N -0.916 5.916 21 Si 1.015 2.985 22 H -0.262 1.262 23 H -0.271 1.271 24 H -0.255 1.255 25 C -0.256 4.256 26 C 0.011 3.989 27 C -0.216 4.216 28 C -0.170 4.170 29 H 0.038 0.962 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.054 0.946 33 H 0.097 0.903 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.422 0.578 37 H 0.426 0.574 38 H 0.139 0.861 39 H 0.161 0.839 40 H 0.123 0.877 41 H 0.273 0.727 42 H 0.127 0.873 43 H 0.129 0.871 44 H 0.099 0.901 45 H 0.101 0.899 46 H 0.107 0.893 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.701 -28.679 -15.295 32.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.239 5.239 3 C -0.077 4.077 4 C -0.001 4.001 5 N -0.336 5.336 6 C 0.299 3.701 7 O -0.414 6.414 8 C 0.291 3.709 9 O -0.389 6.389 10 N -0.282 5.282 11 C 0.084 3.916 12 C -0.214 4.214 13 C -0.067 4.067 14 C -0.226 4.226 15 C 0.083 3.917 16 O -0.130 6.130 17 C -0.490 4.490 18 H 0.118 0.882 19 C -0.217 4.217 20 N -0.554 5.554 21 Si 0.835 3.165 22 H -0.187 1.187 23 H -0.196 1.196 24 H -0.179 1.179 25 C -0.278 4.278 26 C -0.098 4.098 27 C -0.255 4.255 28 C -0.208 4.208 29 H 0.056 0.944 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.072 0.928 33 H 0.115 0.885 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.260 0.740 37 H 0.265 0.735 38 H 0.156 0.844 39 H 0.179 0.821 40 H 0.141 0.859 41 H 0.082 0.918 42 H 0.145 0.855 43 H 0.146 0.854 44 H 0.117 0.883 45 H 0.120 0.880 46 H 0.126 0.874 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.871 -28.566 -14.719 32.190 hybrid contribution -1.196 0.687 -0.128 1.385 sum 0.675 -27.879 -14.848 31.593 Atomic orbital electron populations 1.22636 0.86788 1.02800 1.01356 1.61703 1.08510 1.12632 1.41050 1.22210 1.01979 0.88357 0.95153 1.21481 0.99584 0.79541 0.99479 1.45543 1.55584 1.13761 1.18722 1.19620 0.80894 0.85662 0.83890 1.90796 1.40594 1.75332 1.34639 1.20376 0.80977 0.86910 0.82672 1.90774 1.39738 1.75017 1.33358 1.43124 1.49441 1.13930 1.21679 1.17433 0.92318 0.83380 0.98494 1.20900 0.94504 0.99030 1.06961 1.20965 0.99620 0.90598 0.95467 1.20562 0.94766 1.01212 1.06022 1.19606 0.92767 0.87321 0.92025 1.83982 1.28444 1.33885 1.66735 1.21758 0.87485 1.04333 1.35387 0.88230 1.26522 1.04779 0.94327 0.96070 1.70171 1.39940 1.06625 1.38653 0.84632 0.74359 0.78463 0.79072 1.18733 1.19589 1.17889 1.20854 1.02896 0.92175 1.11845 1.22777 0.99093 0.95815 0.92159 1.23609 0.99585 1.05469 0.96823 1.23122 1.03841 0.92074 1.01746 0.94365 0.90618 0.90925 0.92797 0.88451 0.90412 0.90977 0.73960 0.73492 0.84372 0.82132 0.85883 0.91782 0.85527 0.85372 0.88298 0.88037 0.87446 0.88968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 7.96 127.69 1.02 1.13 16 2 N -0.52 -5.64 4.97 -897.04 -4.46 -10.10 16 3 C 0.05 0.49 5.05 86.30 0.44 0.92 16 4 C 0.12 1.66 5.60 86.38 0.48 2.14 16 5 N -0.68 -11.10 5.55 -464.51 -2.58 -13.68 16 6 C 0.52 12.14 7.89 87.24 0.69 12.83 16 7 O -0.54 -14.93 16.48 -3.27 -0.05 -14.99 16 8 C 0.51 13.97 7.62 87.24 0.66 14.64 16 9 O -0.51 -15.39 14.18 -3.34 -0.05 -15.44 16 10 N -0.64 -19.20 5.32 -304.88 -1.62 -20.82 16 11 C 0.18 6.49 6.27 38.20 0.24 6.73 16 12 C -0.19 -6.61 8.65 22.43 0.19 -6.41 16 13 C -0.05 -1.62 10.03 22.23 0.22 -1.39 16 14 C -0.21 -8.55 9.99 22.42 0.22 -8.33 16 15 C 0.13 6.58 6.64 22.56 0.15 6.73 16 16 O -0.22 -13.26 9.76 -22.73 -0.22 -13.48 16 17 C -0.41 -23.72 9.44 67.92 0.64 -23.08 16 18 H 0.10 5.25 5.30 -2.91 -0.02 5.24 16 19 C -0.02 -1.06 5.49 84.83 0.47 -0.59 16 20 N -0.92 -55.48 13.67 21.61 0.30 -55.18 16 21 Si 1.02 42.50 29.55 68.60 2.03 44.53 16 22 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 23 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 24 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 25 C -0.26 -11.12 9.05 22.52 0.20 -10.91 16 26 C 0.01 0.10 6.11 44.91 0.27 0.37 16 27 C -0.22 -1.74 9.51 30.62 0.29 -1.45 16 28 C -0.17 -1.44 9.99 30.62 0.31 -1.13 16 29 H 0.04 0.36 7.23 -2.39 -0.02 0.34 16 30 H 0.08 0.70 6.63 -2.39 -0.02 0.68 16 31 H 0.07 0.77 6.47 -2.39 -0.02 0.75 16 32 H 0.05 0.47 8.12 -2.38 -0.02 0.45 16 33 H 0.10 0.74 7.96 -2.39 -0.02 0.72 16 34 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 35 H 0.07 1.07 6.55 -2.39 -0.02 1.05 16 36 H 0.42 5.52 7.94 -92.71 -0.74 4.78 16 37 H 0.43 11.68 8.30 -92.71 -0.77 10.91 16 38 H 0.14 4.27 6.43 -2.91 -0.02 4.25 16 39 H 0.16 4.03 8.06 -2.91 -0.02 4.01 16 40 H 0.12 4.94 8.06 -2.91 -0.02 4.91 16 41 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 42 H 0.13 5.53 5.71 -2.91 -0.02 5.51 16 43 H 0.13 0.93 7.93 -2.38 -0.02 0.91 16 44 H 0.10 0.83 5.90 -2.39 -0.01 0.81 16 45 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 46 H 0.11 0.70 8.14 -2.38 -0.02 0.68 16 47 H 0.09 0.88 7.56 -2.39 -0.02 0.86 16 Total: -1.00 -72.48 392.95 -0.62 -73.10 By element: Atomic # 1 Polarization: 34.32 SS G_CDS: -0.46 Total: 33.86 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: 6.50 Total: -7.81 kcal Atomic # 7 Polarization: -91.42 SS G_CDS: -8.36 Total: -99.78 kcal Atomic # 8 Polarization: -43.59 SS G_CDS: -0.32 Total: -43.91 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Total: -72.48 -0.62 -73.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265380056.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.160 kcal (2) G-P(sol) polarization free energy of solvation -72.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds