Wall clock time and date at job start Wed Apr 1 2020 04:30:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46903 * 1
3 3 C 1.46906 * 110.99773 * 2 1
4 4 C 1.52999 * 109.47113 * 66.04267 * 3 2 1
5 5 N 1.46504 * 109.46889 * 180.02562 * 4 3 2
6 6 C 1.34777 * 119.99684 * 180.02562 * 5 4 3
7 7 O 1.21356 * 120.00404 * 359.97438 * 6 5 4
8 8 C 1.49355 * 120.00003 * 180.02562 * 6 5 4
9 9 O 1.21378 * 119.99906 * 359.97438 * 8 6 5
10 10 N 1.34777 * 120.00003 * 180.02562 * 8 6 5
11 11 C 1.39728 * 119.99556 * 174.78291 * 10 8 6
12 12 C 1.39017 * 120.04006 * 326.28030 * 11 10 8
13 13 C 1.38145 * 120.05785 * 180.02562 * 12 11 10
14 14 C 1.38183 * 120.14532 * 359.70098 * 13 12 11
15 15 C 1.38917 * 120.08080 * 0.55652 * 14 13 12
16 16 O 1.35751 * 120.03230 * 179.74537 * 15 14 13
17 17 C 1.34827 * 117.00300 * 173.82204 * 16 15 14
18 18 H 1.08001 * 119.99789 * 354.59330 * 17 16 15
19 19 C 1.38648 * 119.99917 * 174.60123 * 17 16 15
20 20 N 1.31555 * 120.00195 * 359.97438 * 19 17 16
21 21 Si 1.86799 * 119.99750 * 180.02562 * 19 17 16
22 22 H 1.48503 * 109.47475 * 89.99446 * 21 19 17
23 23 H 1.48507 * 109.47282 * 209.99549 * 21 19 17
24 24 H 1.48497 * 109.47348 * 329.99239 * 21 19 17
25 25 C 1.38756 * 119.93875 * 359.46536 * 15 14 13
26 26 C 1.46896 * 111.00318 * 236.04551 * 2 1 3
27 27 C 1.52999 * 117.49910 * 7.70014 * 26 2 1
28 28 C 1.52996 * 117.49725 * 299.04164 * 26 2 1
29 29 H 1.08998 * 109.46863 * 60.00217 * 1 2 3
30 30 H 1.08999 * 109.46590 * 179.97438 * 1 2 3
31 31 H 1.09002 * 109.47178 * 299.99739 * 1 2 3
32 32 H 1.09005 * 109.46878 * 306.04557 * 3 2 1
33 33 H 1.08993 * 109.47004 * 186.04780 * 3 2 1
34 34 H 1.09005 * 109.47011 * 60.00372 * 4 3 2
35 35 H 1.08993 * 109.47604 * 300.00146 * 4 3 2
36 36 H 0.96991 * 120.00125 * 359.97438 * 5 4 3
37 37 H 0.96998 * 119.99977 * 354.76966 * 10 8 6
38 38 H 1.08000 * 119.97223 * 0.02711 * 12 11 10
39 39 H 1.07998 * 119.92611 * 179.97438 * 13 12 11
40 40 H 1.07994 * 119.95482 * 180.29871 * 14 13 12
41 41 H 0.96997 * 119.99824 * 180.02562 * 20 19 17
42 42 H 1.08000 * 120.07290 * 180.22890 * 25 15 14
43 43 H 1.09006 * 115.54779 * 153.36797 * 26 2 1
44 44 H 1.09003 * 117.49783 * 0.02562 * 27 26 2
45 45 H 1.09001 * 117.50141 * 145.02128 * 27 26 2
46 46 H 1.09007 * 117.49694 * 214.97579 * 28 26 2
47 47 H 1.09000 * 117.49918 * 359.97075 * 28 26 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9954 1.3715 0.0000
4 6 1.6314 2.0575 1.3182
5 7 2.1558 3.4255 1.3179
6 6 1.9552 4.2243 2.3847
7 8 1.3397 3.8106 3.3454
8 6 2.4893 5.6191 2.3843
9 8 3.1045 6.0330 1.4233
10 7 2.2891 6.4177 3.4513
11 6 2.8803 7.6829 3.4976
12 6 4.1288 7.8891 2.9220
13 6 4.7139 9.1397 2.9680
14 6 4.0581 10.1906 3.5804
15 6 2.8127 9.9899 4.1623
16 8 2.1716 11.0217 4.7682
17 6 0.9146 10.7931 5.1991
18 1 0.4309 9.8529 4.9788
19 6 0.2431 11.7650 5.9248
20 7 0.8325 12.9101 6.1934
21 14 -1.4981 11.4480 6.5224
22 1 -1.4535 10.8256 7.8700
23 1 -2.2383 12.7334 6.5952
24 1 -2.1870 10.5330 5.5772
25 6 2.2220 8.7351 4.1184
26 6 1.9955 -0.7660 -1.1375
27 6 0.9932 -1.2527 -2.1860
28 6 1.6337 -2.2503 -1.2177
29 1 -0.3633 0.5138 -0.8900
30 1 -0.3632 -1.0277 -0.0005
31 1 -0.3634 0.5138 0.8900
32 1 1.5610 1.9274 -0.8310
33 1 3.0796 1.3445 -0.1083
34 1 2.0658 1.5016 2.1492
35 1 0.5471 2.0845 1.4265
36 1 2.6481 3.7560 0.5503
37 1 1.7344 6.1143 4.1869
38 1 4.6417 7.0710 2.4383
39 1 5.6840 9.2975 2.5205
40 1 4.5162 11.1681 3.6104
41 1 0.3627 13.5899 6.7015
42 1 1.2522 8.5775 4.5668
43 1 2.9848 -0.4694 -1.4864
44 1 -0.0569 -1.0042 -2.0319
45 1 1.3230 -1.2769 -3.2246
46 1 2.3847 -2.9304 -1.6198
47 1 1.0054 -2.6587 -0.4261
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000265380056.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:30:23
Heat of formation + Delta-G solvation = -44.944994 kcal
Electronic energy + Delta-G solvation = -28754.235252 eV
Core-core repulsion = 24517.606416 eV
Total energy + Delta-G solvation = -4236.628836 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.168 amu
Computer time = 1.23 seconds
Orbital eigenvalues (eV)
-42.16822 -40.86073 -40.07110 -39.65161 -38.18650 -36.87816 -35.76070 -34.48305
-34.23880 -31.16274 -30.50415 -29.97653 -27.77300 -27.33947 -25.94230 -23.59288
-23.49683 -23.19102 -22.64011 -21.55411 -20.98801 -20.14666 -19.68838 -18.97992
-18.15422 -17.57947 -17.35601 -17.03497 -16.81683 -16.49268 -16.47111 -16.15655
-15.93362 -15.69770 -15.55280 -15.17095 -15.07690 -14.62580 -14.51525 -14.29833
-14.12366 -13.58446 -13.37839 -13.36179 -13.10670 -13.05507 -12.73788 -12.71460
-12.55871 -12.41441 -12.35998 -12.16327 -12.12070 -11.67824 -11.53215 -11.35023
-11.26467 -10.85602 -10.71891 -10.39701 -9.43516 -9.19065 -8.94757 -8.47524
-6.16186 -0.06935 0.58570 0.70283 1.09807 1.35837 1.44427 1.52396
1.99290 2.16989 2.32754 2.77423 2.80903 3.07969 3.14582 3.30016
3.47248 3.71252 3.94103 3.96716 4.08185 4.08255 4.11420 4.28522
4.30432 4.39170 4.41927 4.54647 4.57687 4.59138 4.74712 4.78008
4.85672 4.89577 4.94732 4.99568 5.05823 5.09371 5.12659 5.24737
5.25332 5.31261 5.60527 5.64168 5.81767 5.94829 6.00225 6.00904
6.11684 6.22725 6.58508 6.77556 6.97036 7.75270 8.75076
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.017117 B = 0.001749 C = 0.001617
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1635.421753 B =16004.258342 C =17315.686645
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.012 3.988
2 N -0.517 5.517
3 C 0.051 3.949
4 C 0.122 3.878
5 N -0.682 5.682
6 C 0.520 3.480
7 O -0.537 6.537
8 C 0.508 3.492
9 O -0.514 6.514
10 N -0.635 5.635
11 C 0.177 3.823
12 C -0.194 4.194
13 C -0.048 4.048
14 C -0.206 4.206
15 C 0.134 3.866
16 O -0.224 6.224
17 C -0.414 4.414
18 H 0.100 0.900
19 C -0.019 4.019
20 N -0.916 5.916
21 Si 1.015 2.985
22 H -0.262 1.262
23 H -0.271 1.271
24 H -0.255 1.255
25 C -0.256 4.256
26 C 0.011 3.989
27 C -0.216 4.216
28 C -0.170 4.170
29 H 0.038 0.962
30 H 0.075 0.925
31 H 0.072 0.928
32 H 0.054 0.946
33 H 0.097 0.903
34 H 0.078 0.922
35 H 0.072 0.928
36 H 0.422 0.578
37 H 0.426 0.574
38 H 0.139 0.861
39 H 0.161 0.839
40 H 0.123 0.877
41 H 0.273 0.727
42 H 0.127 0.873
43 H 0.129 0.871
44 H 0.099 0.901
45 H 0.101 0.899
46 H 0.107 0.893
47 H 0.092 0.908
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.701 -28.679 -15.295 32.547
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.136 4.136
2 N -0.239 5.239
3 C -0.077 4.077
4 C -0.001 4.001
5 N -0.336 5.336
6 C 0.299 3.701
7 O -0.414 6.414
8 C 0.291 3.709
9 O -0.389 6.389
10 N -0.282 5.282
11 C 0.084 3.916
12 C -0.214 4.214
13 C -0.067 4.067
14 C -0.226 4.226
15 C 0.083 3.917
16 O -0.130 6.130
17 C -0.490 4.490
18 H 0.118 0.882
19 C -0.217 4.217
20 N -0.554 5.554
21 Si 0.835 3.165
22 H -0.187 1.187
23 H -0.196 1.196
24 H -0.179 1.179
25 C -0.278 4.278
26 C -0.098 4.098
27 C -0.255 4.255
28 C -0.208 4.208
29 H 0.056 0.944
30 H 0.094 0.906
31 H 0.091 0.909
32 H 0.072 0.928
33 H 0.115 0.885
34 H 0.096 0.904
35 H 0.090 0.910
36 H 0.260 0.740
37 H 0.265 0.735
38 H 0.156 0.844
39 H 0.179 0.821
40 H 0.141 0.859
41 H 0.082 0.918
42 H 0.145 0.855
43 H 0.146 0.854
44 H 0.117 0.883
45 H 0.120 0.880
46 H 0.126 0.874
47 H 0.110 0.890
Dipole moment (debyes) X Y Z Total
from point charges 1.871 -28.566 -14.719 32.190
hybrid contribution -1.196 0.687 -0.128 1.385
sum 0.675 -27.879 -14.848 31.593
Atomic orbital electron populations
1.22636 0.86788 1.02800 1.01356 1.61703 1.08510 1.12632 1.41050
1.22210 1.01979 0.88357 0.95153 1.21481 0.99584 0.79541 0.99479
1.45543 1.55584 1.13761 1.18722 1.19620 0.80894 0.85662 0.83890
1.90796 1.40594 1.75332 1.34639 1.20376 0.80977 0.86910 0.82672
1.90774 1.39738 1.75017 1.33358 1.43124 1.49441 1.13930 1.21679
1.17433 0.92318 0.83380 0.98494 1.20900 0.94504 0.99030 1.06961
1.20965 0.99620 0.90598 0.95467 1.20562 0.94766 1.01212 1.06022
1.19606 0.92767 0.87321 0.92025 1.83982 1.28444 1.33885 1.66735
1.21758 0.87485 1.04333 1.35387 0.88230 1.26522 1.04779 0.94327
0.96070 1.70171 1.39940 1.06625 1.38653 0.84632 0.74359 0.78463
0.79072 1.18733 1.19589 1.17889 1.20854 1.02896 0.92175 1.11845
1.22777 0.99093 0.95815 0.92159 1.23609 0.99585 1.05469 0.96823
1.23122 1.03841 0.92074 1.01746 0.94365 0.90618 0.90925 0.92797
0.88451 0.90412 0.90977 0.73960 0.73492 0.84372 0.82132 0.85883
0.91782 0.85527 0.85372 0.88298 0.88037 0.87446 0.88968
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.01 0.12 7.96 127.69 1.02 1.13 16
2 N -0.52 -5.64 4.97 -897.04 -4.46 -10.10 16
3 C 0.05 0.49 5.05 86.30 0.44 0.92 16
4 C 0.12 1.66 5.60 86.38 0.48 2.14 16
5 N -0.68 -11.10 5.55 -464.51 -2.58 -13.68 16
6 C 0.52 12.14 7.89 87.24 0.69 12.83 16
7 O -0.54 -14.93 16.48 -3.27 -0.05 -14.99 16
8 C 0.51 13.97 7.62 87.24 0.66 14.64 16
9 O -0.51 -15.39 14.18 -3.34 -0.05 -15.44 16
10 N -0.64 -19.20 5.32 -304.88 -1.62 -20.82 16
11 C 0.18 6.49 6.27 38.20 0.24 6.73 16
12 C -0.19 -6.61 8.65 22.43 0.19 -6.41 16
13 C -0.05 -1.62 10.03 22.23 0.22 -1.39 16
14 C -0.21 -8.55 9.99 22.42 0.22 -8.33 16
15 C 0.13 6.58 6.64 22.56 0.15 6.73 16
16 O -0.22 -13.26 9.76 -22.73 -0.22 -13.48 16
17 C -0.41 -23.72 9.44 67.92 0.64 -23.08 16
18 H 0.10 5.25 5.30 -2.91 -0.02 5.24 16
19 C -0.02 -1.06 5.49 84.83 0.47 -0.59 16
20 N -0.92 -55.48 13.67 21.61 0.30 -55.18 16
21 Si 1.02 42.50 29.55 68.60 2.03 44.53 16
22 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16
23 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16
24 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16
25 C -0.26 -11.12 9.05 22.52 0.20 -10.91 16
26 C 0.01 0.10 6.11 44.91 0.27 0.37 16
27 C -0.22 -1.74 9.51 30.62 0.29 -1.45 16
28 C -0.17 -1.44 9.99 30.62 0.31 -1.13 16
29 H 0.04 0.36 7.23 -2.39 -0.02 0.34 16
30 H 0.08 0.70 6.63 -2.39 -0.02 0.68 16
31 H 0.07 0.77 6.47 -2.39 -0.02 0.75 16
32 H 0.05 0.47 8.12 -2.38 -0.02 0.45 16
33 H 0.10 0.74 7.96 -2.39 -0.02 0.72 16
34 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16
35 H 0.07 1.07 6.55 -2.39 -0.02 1.05 16
36 H 0.42 5.52 7.94 -92.71 -0.74 4.78 16
37 H 0.43 11.68 8.30 -92.71 -0.77 10.91 16
38 H 0.14 4.27 6.43 -2.91 -0.02 4.25 16
39 H 0.16 4.03 8.06 -2.91 -0.02 4.01 16
40 H 0.12 4.94 8.06 -2.91 -0.02 4.91 16
41 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16
42 H 0.13 5.53 5.71 -2.91 -0.02 5.51 16
43 H 0.13 0.93 7.93 -2.38 -0.02 0.91 16
44 H 0.10 0.83 5.90 -2.39 -0.01 0.81 16
45 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16
46 H 0.11 0.70 8.14 -2.38 -0.02 0.68 16
47 H 0.09 0.88 7.56 -2.39 -0.02 0.86 16
Total: -1.00 -72.48 392.95 -0.62 -73.10
By element:
Atomic # 1 Polarization: 34.32 SS G_CDS: -0.46 Total: 33.86 kcal
Atomic # 6 Polarization: -14.31 SS G_CDS: 6.50 Total: -7.81 kcal
Atomic # 7 Polarization: -91.42 SS G_CDS: -8.36 Total: -99.78 kcal
Atomic # 8 Polarization: -43.59 SS G_CDS: -0.32 Total: -43.91 kcal
Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal
Total: -72.48 -0.62 -73.10 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000265380056.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 28.160 kcal
(2) G-P(sol) polarization free energy of solvation -72.481 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.321 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.624 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.105 kcal
(6) G-S(sol) free energy of system = (1) + (5) -44.945 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.23 seconds