Wall clock time and date at job start Wed Apr 1 2020 05:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35972 * 117.00076 * 2 1 4 4 C 1.38560 * 120.08244 * 0.27605 * 3 2 1 5 5 C 1.38238 * 120.01538 * 180.29410 * 4 3 2 6 6 C 1.38287 * 120.17519 * 359.73106 * 5 4 3 7 7 C 1.38194 * 120.16680 * 359.97031 * 6 5 4 8 8 C 1.38720 * 119.98634 * 0.02951 * 7 6 5 9 9 N 1.40117 * 120.09224 * 179.97438 * 8 7 6 10 10 C 1.46766 * 124.34548 * 89.99738 * 9 8 7 11 11 C 1.54480 * 105.47388 * 162.98578 * 10 9 8 12 12 C 1.54634 * 101.76494 * 25.41095 * 11 10 9 13 13 H 1.09000 * 110.48496 * 94.01553 * 12 11 10 14 14 N 1.46498 * 110.48952 * 216.52518 * 12 11 10 15 15 C 1.34774 * 120.00211 * 203.16022 * 14 12 11 16 16 O 1.21586 * 120.00048 * 0.02562 * 15 14 12 17 17 N 1.34773 * 119.99940 * 180.02562 * 15 14 12 18 18 C 1.46506 * 119.99969 * 180.02562 * 17 15 14 19 19 C 1.52998 * 109.47237 * 179.72043 * 18 17 15 20 20 C 1.50696 * 109.46969 * 179.97438 * 19 18 17 21 21 H 1.07997 * 120.00408 * 0.02562 * 20 19 18 22 22 C 1.37885 * 119.99883 * 180.02562 * 20 19 18 23 23 N 1.31508 * 119.99834 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99926 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47112 * 89.99781 * 24 22 20 26 26 H 1.48498 * 109.47011 * 210.00049 * 24 22 20 27 27 H 1.48494 * 109.47201 * 330.00023 * 24 22 20 28 28 C 1.34645 * 124.31815 * 270.12630 * 9 8 7 29 29 O 1.21298 * 125.07259 * 0.42186 * 28 9 8 30 30 H 1.09008 * 109.46591 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47057 * 299.99770 * 1 2 3 32 32 H 1.08991 * 109.47080 * 59.99949 * 1 2 3 33 33 H 1.08001 * 119.98980 * 0.02562 * 4 3 2 34 34 H 1.07998 * 119.91457 * 179.70145 * 5 4 3 35 35 H 1.08002 * 119.91155 * 179.97438 * 6 5 4 36 36 H 1.07998 * 120.00207 * 180.02562 * 7 6 5 37 37 H 1.08992 * 110.24897 * 43.98257 * 10 9 8 38 38 H 1.09006 * 110.24928 * 281.97967 * 10 9 8 39 39 H 1.09000 * 110.96781 * 267.29967 * 11 10 9 40 40 H 1.08998 * 111.00762 * 143.54497 * 11 10 9 41 41 H 0.97004 * 119.99747 * 23.16671 * 14 12 11 42 42 H 0.97005 * 120.00161 * 359.72198 * 17 15 14 43 43 H 1.09001 * 109.46512 * 299.72412 * 18 17 15 44 44 H 1.08998 * 109.47174 * 59.71534 * 18 17 15 45 45 H 1.09000 * 109.46986 * 299.99958 * 19 18 17 46 46 H 1.09002 * 109.46857 * 60.00093 * 19 18 17 47 47 H 0.96999 * 119.99905 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2934 2.3747 0.0058 5 6 1.9224 3.6056 -0.0004 6 6 3.3032 3.6806 -0.0067 7 6 4.0614 2.5253 -0.0063 8 6 3.4373 1.2864 -0.0001 9 7 4.2039 0.1135 -0.0002 10 6 4.6623 -0.5762 1.2115 11 6 5.0659 -1.9944 0.7508 12 6 5.4094 -1.7564 -0.7380 13 1 6.4773 -1.5742 -0.8587 14 7 4.9909 -2.9015 -1.5502 15 6 5.5781 -3.1337 -2.7409 16 8 6.4555 -2.3930 -3.1408 17 7 5.1927 -4.1869 -3.4883 18 6 5.8313 -4.4396 -4.7824 19 6 5.2192 -5.6895 -5.4179 20 6 5.8757 -5.9490 -6.7492 21 1 6.6522 -5.2888 -7.1063 22 6 5.4850 -7.0295 -7.5116 23 7 4.5391 -7.8332 -7.0770 24 14 6.2993 -7.3516 -9.1616 25 1 7.4799 -8.2312 -8.9677 26 1 5.3308 -8.0162 -10.0702 27 1 6.7345 -6.0635 -9.7587 28 6 4.6164 -0.5236 -1.1123 29 8 4.3861 -0.1640 -2.2476 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 0.2148 2.3195 0.0107 34 1 1.3339 4.5112 -0.0007 35 1 3.7902 4.6446 -0.0119 36 1 5.1396 2.5869 -0.0108 37 1 3.8551 -0.6323 1.9418 38 1 5.5221 -0.0591 1.6375 39 1 4.2325 -2.6895 0.8524 40 1 5.9374 -2.3504 1.3001 41 1 4.2912 -3.4926 -1.2311 42 1 4.4955 -4.7802 -3.1675 43 1 5.6734 -3.5837 -5.4387 44 1 6.9006 -4.5927 -4.6362 45 1 5.3772 -6.5453 -4.7615 46 1 4.1500 -5.5362 -5.5641 47 1 4.2640 -8.5930 -7.6135 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273616475.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:53 Heat of formation + Delta-G solvation = -63.133231 kcal Electronic energy + Delta-G solvation = -30040.696693 eV Core-core repulsion = 25803.279156 eV Total energy + Delta-G solvation = -4237.417537 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.28581 -40.10249 -39.02528 -37.68365 -36.49640 -35.07334 -34.36321 -32.82123 -32.07534 -30.57580 -29.62466 -28.96653 -27.56401 -27.03867 -24.55575 -23.51657 -22.51385 -22.05537 -21.15380 -20.58899 -19.93407 -18.44908 -18.11774 -17.37853 -17.01199 -16.38656 -16.35657 -16.07522 -15.96110 -15.35914 -14.95484 -14.75035 -14.60743 -14.46680 -14.14299 -13.92575 -13.85192 -13.60737 -13.46457 -12.98943 -12.90273 -12.83787 -12.47194 -12.35182 -12.19174 -12.01179 -11.52197 -11.48602 -11.38982 -11.11954 -10.99110 -10.57862 -10.40575 -10.19542 -9.85901 -9.49443 -9.34344 -9.20166 -9.08599 -8.88377 -8.51828 -8.42015 -8.16745 -6.03877 -4.05891 0.83120 1.04334 2.34988 2.66861 2.92316 3.17540 3.30028 3.33851 3.39635 3.45188 3.67056 4.13741 4.33057 4.43752 4.44251 4.48482 4.55978 4.66780 4.71708 4.78028 4.79480 4.84680 4.99661 5.10496 5.13809 5.21894 5.27906 5.33259 5.34911 5.45373 5.63178 5.83376 5.95157 6.09290 6.24745 6.36944 6.44610 6.49332 6.57193 6.85178 6.87072 7.05973 7.09301 7.24849 7.63442 7.70805 7.95973 8.15910 8.32345 8.49624 8.99175 9.08326 9.58396 11.07902 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016803 B = 0.002019 C = 0.001970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.974529 B =13867.542626 C =14207.217986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.307 6.307 3 C 0.136 3.864 4 C -0.206 4.206 5 C -0.075 4.075 6 C -0.151 4.151 7 C -0.072 4.072 8 C 0.113 3.887 9 N -0.577 5.577 10 C 0.112 3.888 11 C -0.135 4.135 12 C 0.142 3.858 13 H 0.126 0.874 14 N -0.735 5.735 15 C 0.703 3.297 16 O -0.587 6.587 17 N -0.737 5.737 18 C 0.141 3.859 19 C 0.013 3.987 20 C -0.519 4.519 21 H 0.060 0.940 22 C 0.058 3.942 23 N -0.895 5.895 24 Si 0.897 3.103 25 H -0.280 1.280 26 H -0.286 1.286 27 H -0.272 1.272 28 C 0.508 3.492 29 O -0.491 6.491 30 H 0.102 0.898 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.132 0.868 34 H 0.128 0.872 35 H 0.129 0.871 36 H 0.133 0.867 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.091 0.909 40 H 0.102 0.898 41 H 0.398 0.602 42 H 0.393 0.607 43 H 0.054 0.946 44 H 0.054 0.946 45 H 0.022 0.978 46 H 0.022 0.978 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.876 19.489 26.200 33.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.219 6.219 3 C 0.089 3.911 4 C -0.225 4.225 5 C -0.093 4.093 6 C -0.170 4.170 7 C -0.091 4.091 8 C 0.023 3.977 9 N -0.311 5.311 10 C -0.010 4.010 11 C -0.174 4.174 12 C 0.032 3.968 13 H 0.144 0.856 14 N -0.392 5.392 15 C 0.403 3.597 16 O -0.464 6.464 17 N -0.390 5.390 18 C 0.018 3.982 19 C -0.024 4.024 20 C -0.557 4.557 21 H 0.078 0.922 22 C -0.144 4.144 23 N -0.534 5.534 24 Si 0.725 3.275 25 H -0.206 1.206 26 H -0.212 1.212 27 H -0.197 1.197 28 C 0.293 3.707 29 O -0.361 6.361 30 H 0.120 0.880 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.150 0.850 34 H 0.146 0.854 35 H 0.147 0.853 36 H 0.150 0.850 37 H 0.100 0.900 38 H 0.095 0.905 39 H 0.109 0.891 40 H 0.120 0.880 41 H 0.232 0.768 42 H 0.225 0.775 43 H 0.073 0.927 44 H 0.072 0.928 45 H 0.040 0.960 46 H 0.040 0.960 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.204 20.013 25.057 32.868 hybrid contribution -0.718 -0.610 -0.577 1.105 sum -7.922 19.403 24.480 32.226 Atomic orbital electron populations 1.23108 0.78218 1.04281 1.01297 1.86155 1.21395 1.26277 1.88100 1.19347 0.91448 0.84890 0.95422 1.21185 1.00180 0.91974 1.09163 1.21021 0.94700 0.97035 0.96549 1.20978 0.93788 0.98169 1.04037 1.21226 1.00496 0.90665 0.96696 1.16693 0.86280 0.86116 1.08619 1.45467 1.53104 1.24651 1.07883 1.22091 1.00055 0.91724 0.87147 1.22921 1.03713 0.96759 0.93978 1.21240 1.00805 0.84778 0.90023 0.85641 1.44834 1.43677 1.30044 1.20675 1.15996 0.81923 0.81866 0.79962 1.90899 1.34232 1.49311 1.71954 1.45477 1.42695 1.28746 1.22073 1.21596 0.96449 0.99905 0.80265 1.19324 0.96620 0.90848 0.95649 1.21067 1.20685 1.11043 1.02946 0.92200 1.24999 0.95082 0.95955 0.98339 1.69957 1.29392 1.15835 1.38260 0.86506 0.79082 0.78484 0.83453 1.20588 1.21223 1.19712 1.21661 0.79402 0.85317 0.84281 1.90775 1.55930 1.68678 1.20729 0.87996 0.92621 0.92494 0.85001 0.85389 0.85257 0.84961 0.90019 0.90532 0.89069 0.87971 0.76772 0.77459 0.92743 0.92751 0.95975 0.95977 0.92926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.31 -3.36 10.24 -19.65 -0.20 -3.56 16 3 C 0.14 1.50 6.70 -39.07 -0.26 1.24 16 4 C -0.21 -1.78 9.04 -39.46 -0.36 -2.13 16 5 C -0.07 -0.57 10.04 -39.56 -0.40 -0.97 16 6 C -0.15 -1.21 10.04 -39.58 -0.40 -1.61 16 7 C -0.07 -0.70 9.96 -39.42 -0.39 -1.10 16 8 C 0.11 1.32 5.40 -83.50 -0.45 0.86 16 9 N -0.58 -6.61 2.70 -112.06 -0.30 -6.92 16 10 C 0.11 0.78 7.28 -3.12 -0.02 0.75 16 11 C -0.14 -0.90 6.87 -25.10 -0.17 -1.07 16 12 C 0.14 1.73 3.25 -67.94 -0.22 1.51 16 13 H 0.13 1.64 7.61 -51.93 -0.40 1.24 16 14 N -0.74 -10.21 5.15 -58.69 -0.30 -10.51 16 15 C 0.70 13.44 8.56 -86.92 -0.74 12.69 16 16 O -0.59 -13.69 16.02 5.29 0.08 -13.61 16 17 N -0.74 -14.05 5.56 -65.22 -0.36 -14.41 16 18 C 0.14 3.21 5.61 -4.04 -0.02 3.19 16 19 C 0.01 0.34 5.09 -27.89 -0.14 0.20 16 20 C -0.52 -14.85 9.11 -34.44 -0.31 -15.16 16 21 H 0.06 1.69 7.74 -52.49 -0.41 1.28 16 22 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 23 N -0.90 -26.68 13.29 55.43 0.74 -25.95 16 24 Si 0.90 21.93 29.54 -169.99 -5.02 16.90 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 26 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 27 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 28 C 0.51 7.72 7.64 -10.76 -0.08 7.64 16 29 O -0.49 -10.21 17.71 5.54 0.10 -10.11 16 30 H 0.10 0.55 8.14 -51.92 -0.42 0.12 16 31 H 0.06 0.27 7.65 -51.93 -0.40 -0.13 16 32 H 0.06 0.37 7.68 -51.93 -0.40 -0.03 16 33 H 0.13 0.84 6.30 -52.49 -0.33 0.51 16 34 H 0.13 0.63 8.06 -52.49 -0.42 0.20 16 35 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 36 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 37 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.09 0.52 7.81 -51.93 -0.41 0.11 16 40 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.40 4.25 8.42 -40.82 -0.34 3.91 16 42 H 0.39 6.39 8.49 -40.82 -0.35 6.04 16 43 H 0.05 1.33 8.14 -51.93 -0.42 0.90 16 44 H 0.05 1.27 8.14 -51.93 -0.42 0.85 16 45 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 400.70 15.07 6.04 6.04 Total: -1.00 -39.82 400.70 -9.12 -48.94 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -6.81 Total: 4.41 kcal Atomic # 6 Polarization: 11.86 SS G_CDS: -3.08 Total: 8.78 kcal Atomic # 7 Polarization: -57.56 SS G_CDS: -0.23 Total: -57.79 kcal Atomic # 8 Polarization: -27.26 SS G_CDS: -0.02 Total: -27.28 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -39.82 -9.12 -48.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273616475.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.193 kcal (2) G-P(sol) polarization free energy of solvation -39.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds